Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS20270

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,531,721	-		HGI48_RS20260	0.76	+1.0
4,531,789	-		HGI48_RS20260	0.81	+0.1
4,531,789	-		HGI48_RS20260	0.81	+0.4
4,531,909	+		HGI48_RS20260	0.89	+0.1
4,531,909	+		HGI48_RS20260	0.89	+0.4
4,531,909	+		HGI48_RS20260	0.89	+0.7
4,531,909	+		HGI48_RS20260	0.89	-0.6
4,531,920	+		HGI48_RS20260	0.89	-1.0
4,532,055	-				-2.0
4,532,096	-				+0.4
4,532,096	-				-1.5
4,532,104	-				-0.7
4,532,109	+				-0.2
4,532,109	+				-1.8
4,532,109	+				-0.2
4,532,109	+				+0.1
4,532,110	-				-1.4
4,532,110	-				-2.5
4,532,110	-				-1.8
4,532,110	-				+0.2
4,532,110	-				+0.4
4,532,110	-				+0.8
4,532,110	-				-1.8
4,532,110	-				-2.8
4,532,119	+				+0.2
4,532,120	-				-0.5
4,532,120	-				+0.6
4,532,120	-				-0.6
4,532,135	+				-0.4
4,532,136	-				-2.0
4,532,136	-				-0.0
4,532,136	-				-0.2
4,532,136	-				+0.3
4,532,138	+				+0.8
4,532,138	+				-0.9
4,532,138	+				-1.0
4,532,139	-				+2.0
4,532,139	-				-0.0
4,532,139	-				-1.7
4,532,139	-				+0.8
4,532,139	-				+1.2
4,532,141	+				-0.9
4,532,142	-				+0.8
4,532,164	-				+0.4
4,532,205	+				+0.6
4,532,205	+				+1.3
4,532,206	-				+1.2
4,532,242	-				+0.8
4,532,285	-		HGI48_RS20265	0.30	-1.5
4,532,353	+		HGI48_RS20265	0.47	-1.2
4,532,354	-				+1.8
4,532,356	-		HGI48_RS20265	0.48	+1.1
4,532,356	-				+0.8
4,532,408	+		HGI48_RS20265	0.60	+0.6
4,532,408	+		HGI48_RS20265	0.60	-0.2
4,532,409	-		HGI48_RS20265	0.61	+1.2
4,532,409	-		HGI48_RS20265	0.61	+1.0
4,532,409	-		HGI48_RS20265	0.61	-0.6
4,532,409	-		HGI48_RS20265	0.61	-1.4
4,532,420	-		HGI48_RS20265	0.63	+0.5
4,532,556	-				-0.8
4,532,556	-				-0.2
4,532,556	-				-1.5
4,532,556	-				+0.1
4,532,556	-				-0.8
4,532,582	+				-0.8
4,532,582	+				+0.7
4,532,583	-				+0.6
4,532,594	-				-0.3
4,532,644	-				-1.1
4,532,650	+				+0.8
4,532,675	+				-1.7
4,532,675	+				+1.6
4,532,675	+				+1.3
4,532,675	+				-0.2
4,532,676	-				-1.5
4,532,676	-				+0.5
4,532,676	-				-0.6
4,532,695	+				-0.8
4,532,695	+				+1.1
4,532,695	+				+0.8
4,532,696	-				-1.5
4,532,696	-				-2.0
4,532,696	-				+0.5
4,532,696	-				-0.3
4,532,696	-				-2.2
4,532,872	+		HGI48_RS20270	0.14	-2.4
4,532,872	+		HGI48_RS20270	0.14	-0.8
4,532,872	+		HGI48_RS20270	0.14	-1.9
4,532,872	+		HGI48_RS20270	0.14	-2.0
4,532,872	+				+0.8
4,532,872	+				-0.2
4,532,873	-		HGI48_RS20270	0.15	+0.7
4,532,873	-		HGI48_RS20270	0.15	+0.2
4,532,873	-		HGI48_RS20270	0.15	-0.8
4,532,873	-		HGI48_RS20270	0.15	-1.1
4,532,873	-				+0.2
4,532,917	+		HGI48_RS20270	0.18	-1.2
4,532,917	+		HGI48_RS20270	0.18	-3.1
4,532,917	+		HGI48_RS20270	0.18	-1.3
4,532,918	-		HGI48_RS20270	0.18	-0.3
4,532,918	-		HGI48_RS20270	0.18	-0.4
4,532,939	+		HGI48_RS20270	0.19	-1.7
4,532,974	+		HGI48_RS20270	0.21	-1.6
4,532,974	+		HGI48_RS20270	0.21	-0.8
4,532,975	-		HGI48_RS20270	0.21	-2.5
4,532,975	-				+1.4
4,532,975	-		HGI48_RS20270	0.21	-0.8
4,532,975	-		HGI48_RS20270	0.21	-2.0
4,532,975	-		HGI48_RS20270	0.21	+0.3
4,532,975	-		HGI48_RS20270	0.21	+0.6
4,532,975	-		HGI48_RS20270	0.21	+0.3
4,532,977	+		HGI48_RS20270	0.22	-1.5
4,533,076	+		HGI48_RS20270	0.28	+1.1
4,533,076	+		HGI48_RS20270	0.28	-0.9
4,533,076	+		HGI48_RS20270	0.28	+0.1
4,533,077	-		HGI48_RS20270	0.28	-0.8
4,533,162	+		HGI48_RS20270	0.34	-2.4
4,533,162	+		HGI48_RS20270	0.34	-0.4
4,533,163	-		HGI48_RS20270	0.34	+0.9
4,533,163	-		HGI48_RS20270	0.34	+1.0
4,533,163	-		HGI48_RS20270	0.34	+0.1
4,533,163	-		HGI48_RS20270	0.34	+1.0
4,533,163	-		HGI48_RS20270	0.34	-1.5
4,533,327	-		HGI48_RS20270	0.45	-1.0
4,533,644	-		HGI48_RS20270	0.67	-2.5
4,533,644	-		HGI48_RS20270	0.67	-0.4
4,533,644	-		HGI48_RS20270	0.67	+0.5
4,533,644	-		HGI48_RS20270	0.67	+0.5
4,533,644	-		HGI48_RS20270	0.67	-0.6
4,533,705	-		HGI48_RS20270	0.71	-1.5
4,533,862	+		HGI48_RS20270	0.81	-1.0
4,533,862	+		HGI48_RS20270	0.81	-0.9
4,533,862	+		HGI48_RS20270	0.81	-1.0
4,533,862	+		HGI48_RS20270	0.81	-2.2
4,533,862	+		HGI48_RS20270	0.81	+1.6
4,533,862	+		HGI48_RS20270	0.81	-0.2
4,533,862	+		HGI48_RS20270	0.81	-1.2
4,533,862	+				+0.8
4,533,862	+		HGI48_RS20270	0.81	-2.8
4,533,862	+		HGI48_RS20270	0.81	-1.9
4,533,863	-		HGI48_RS20270	0.81	+0.1
4,533,863	-		HGI48_RS20270	0.81	-0.3
4,533,863	-		HGI48_RS20270	0.81	-1.8
4,533,863	-				+2.1
4,533,863	-		HGI48_RS20270	0.81	+0.5
4,533,863	-		HGI48_RS20270	0.81	-0.4
4,533,863	-		HGI48_RS20270	0.81	-0.0
4,533,863	-		HGI48_RS20270	0.81	-0.4
4,533,875	+		HGI48_RS20270	0.82	-1.2
4,534,008	+				-1.8
4,534,036	+				-1.5
4,534,037	-				-0.2
4,534,037	-				-0.0
4,534,118	+				-1.0
4,534,118	+				-1.0
4,534,119	-				-1.2
4,534,119	-				-0.1
4,534,126	+				-1.8
4,534,126	+				-0.7
4,534,126	+				+0.8
4,534,127	-				+0.2
4,534,127	-				-0.8
4,534,127	-				-1.5
4,534,156	-				+0.3
4,534,156	-				+0.5
4,534,169	+				-1.5
4,534,169	+				-0.3
4,534,169	+				-1.0
4,534,170	-				-1.2
4,534,170	-				-0.4
4,534,211	-				+0.2
4,534,215	+				+0.6
4,534,215	+				+0.1
4,534,215	+				-0.8
4,534,216	-				+0.7
4,534,216	-				-0.3
4,534,216	-				-1.2
4,534,216	-				-0.2
4,534,227	+				-2.2
4,534,227	+				+0.1
4,534,244	+				-1.8
4,534,244	+				-1.8
4,534,245	-				+2.4
4,534,246	+				+0.5
4,534,247	-				-0.2
4,534,247	-				-0.4
4,534,250	-				-0.7
4,534,308	-				+0.7
4,534,308	-				-1.6
4,534,377	+				+1.0
4,534,377	+				+0.0
4,534,378	-				+0.2
4,534,378	-				-0.3
4,534,464	-		HGI48_RS20275	0.18	+0.3
4,534,464	-		HGI48_RS20275	0.18	+0.9
4,534,522	+		HGI48_RS20275	0.25	+1.8
4,534,522	+				+2.6
4,534,606	+		HGI48_RS20275	0.34	-0.4
4,534,773	+		HGI48_RS20275	0.53	+0.5
4,534,773	+		HGI48_RS20275	0.53	+0.2
4,534,774	-		HGI48_RS20275	0.53	+0.7
4,534,774	-				+1.8
4,534,790	+				-0.2
4,534,791	-		HGI48_RS20275	0.55	-0.5
4,534,791	-				+0.8
4,534,941	+		HGI48_RS20275	0.72	-1.5
4,534,941	+		HGI48_RS20275	0.72	+0.3
4,534,942	-		HGI48_RS20275	0.72	-1.2
4,534,942	-		HGI48_RS20275	0.72	-0.2
4,534,957	+		HGI48_RS20275	0.74	+0.4
4,534,957	+				+0.2
4,534,957	+		HGI48_RS20275	0.74	-2.2
4,534,958	-		HGI48_RS20275	0.74	+0.8
4,534,992	+		HGI48_RS20275	0.78	-0.2
4,534,992	+		HGI48_RS20275	0.78	+0.3
4,534,993	-		HGI48_RS20275	0.78	-0.0
4,534,993	-		HGI48_RS20275	0.78	+0.6
4,534,993	-		HGI48_RS20275	0.78	-1.2
4,535,036	+				+0.8
4,535,036	+		HGI48_RS20275	0.83	+0.2
4,535,037	-		HGI48_RS20275	0.83	-1.8
4,535,037	-		HGI48_RS20275	0.83	-0.0
4,535,037	-				+0.8
4,535,064	+		HGI48_RS20275	0.86	-0.2
4,535,065	-		HGI48_RS20275	0.86	-3.2
4,535,065	-		HGI48_RS20275	0.86	-0.1
4,535,094	+		HGI48_RS20275	0.89	-2.4