Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS19815 and HGI48_RS19820 are separated by 75 nucleotides HGI48_RS19820 and HGI48_RS19825 are separated by 3 nucleotides HGI48_RS19825 and HGI48_RS19830 overlap by 1 nucleotides
HGI48_RS19815: HGI48_RS19815 - glycerol-3-phosphate dehydrogenase, at 4,427,873 to 4,429,372
_RS19815
HGI48_RS19820: HGI48_RS19820 - DUF4276 family protein, at 4,429,448 to 4,429,714
_RS19820
HGI48_RS19825: HGI48_RS19825 - DUF4276 family protein, at 4,429,718 to 4,430,086
_RS19825
HGI48_RS19830: HGI48_RS19830 - AAA family ATPase, at 4,430,086 to 4,431,243
_RS19830
Position (kb) 4429
4430 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4428.756 kb on + strand, within HGI48_RS19815 at 4428.758 kb on + strand, within HGI48_RS19815 at 4428.810 kb on - strand at 4428.987 kb on - strand at 4429.344 kb on - strand at 4429.374 kb on + strand at 4429.374 kb on + strand at 4429.375 kb on - strand at 4429.381 kb on + strand at 4429.412 kb on - strand at 4429.429 kb on - strand at 4429.429 kb on - strand at 4429.481 kb on - strand, within HGI48_RS19820 at 4429.511 kb on + strand, within HGI48_RS19820 at 4429.511 kb on + strand, within HGI48_RS19820 at 4429.555 kb on + strand, within HGI48_RS19820 at 4429.555 kb on + strand, within HGI48_RS19820 at 4429.557 kb on + strand, within HGI48_RS19820 at 4429.567 kb on + strand, within HGI48_RS19820 at 4429.568 kb on - strand, within HGI48_RS19820 at 4429.618 kb on + strand, within HGI48_RS19820 at 4429.619 kb on - strand, within HGI48_RS19820 at 4429.621 kb on + strand, within HGI48_RS19820 at 4429.695 kb on - strand at 4429.789 kb on + strand, within HGI48_RS19825 at 4429.796 kb on - strand, within HGI48_RS19825 at 4429.800 kb on - strand, within HGI48_RS19825 at 4429.800 kb on - strand, within HGI48_RS19825 at 4429.899 kb on + strand, within HGI48_RS19825 at 4429.910 kb on - strand, within HGI48_RS19825 at 4429.992 kb on - strand, within HGI48_RS19825 at 4430.075 kb on + strand at 4430.088 kb on - strand at 4430.254 kb on - strand, within HGI48_RS19830 at 4430.285 kb on + strand, within HGI48_RS19830 at 4430.341 kb on - strand, within HGI48_RS19830 at 4430.341 kb on - strand, within HGI48_RS19830 at 4430.371 kb on + strand, within HGI48_RS19830 at 4430.372 kb on - strand, within HGI48_RS19830 at 4430.377 kb on + strand, within HGI48_RS19830 at 4430.532 kb on + strand, within HGI48_RS19830 at 4430.535 kb on + strand, within HGI48_RS19830 at 4430.604 kb on + strand, within HGI48_RS19830 at 4430.634 kb on - strand, within HGI48_RS19830 at 4430.638 kb on + strand, within HGI48_RS19830 at 4430.679 kb on + strand, within HGI48_RS19830
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 4,428,756 + HGI48_RS19815 0.59 +0.1 4,428,758 + HGI48_RS19815 0.59 +1.8 4,428,810 - +1.5 4,428,987 - +0.8 4,429,344 - +0.3 4,429,374 + -0.5 4,429,374 + -2.4 4,429,375 - +1.0 4,429,381 + +0.5 4,429,412 - +0.8 4,429,429 - +0.9 4,429,429 - +0.0 4,429,481 - HGI48_RS19820 0.12 -1.2 4,429,511 + HGI48_RS19820 0.24 +1.0 4,429,511 + HGI48_RS19820 0.24 -1.5 4,429,555 + HGI48_RS19820 0.40 +0.0 4,429,555 + HGI48_RS19820 0.40 +1.3 4,429,557 + HGI48_RS19820 0.41 -1.5 4,429,567 + HGI48_RS19820 0.45 +0.1 4,429,568 - HGI48_RS19820 0.45 -0.6 4,429,618 + HGI48_RS19820 0.64 -0.4 4,429,619 - HGI48_RS19820 0.64 -1.2 4,429,621 + HGI48_RS19820 0.65 +0.4 4,429,695 - -0.2 4,429,789 + HGI48_RS19825 0.19 +0.2 4,429,796 - HGI48_RS19825 0.21 -0.3 4,429,800 - HGI48_RS19825 0.22 -0.6 4,429,800 - HGI48_RS19825 0.22 -0.2 4,429,899 + HGI48_RS19825 0.49 -0.2 4,429,910 - HGI48_RS19825 0.52 -0.2 4,429,992 - HGI48_RS19825 0.74 -0.8 4,430,075 + -1.0 4,430,088 - +1.0 4,430,254 - HGI48_RS19830 0.15 -0.5 4,430,285 + HGI48_RS19830 0.17 -1.8 4,430,341 - HGI48_RS19830 0.22 -0.2 4,430,341 - HGI48_RS19830 0.22 -0.2 4,430,371 + HGI48_RS19830 0.25 -0.4 4,430,372 - HGI48_RS19830 0.25 -0.0 4,430,377 + HGI48_RS19830 0.25 -1.2 4,430,532 + HGI48_RS19830 0.39 +0.4 4,430,535 + HGI48_RS19830 0.39 -0.5 4,430,604 + HGI48_RS19830 0.45 -0.1 4,430,634 - HGI48_RS19830 0.47 -0.5 4,430,638 + HGI48_RS19830 0.48 -0.8 4,430,679 + HGI48_RS19830 0.51 -0.8
Or see this region's nucleotide sequence