Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS19750

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,409,341	+		HGI48_RS19745	0.42	-0.6
4,409,342	-		HGI48_RS19745	0.42	-0.4
4,409,347	+				-0.8
4,409,348	-		HGI48_RS19745	0.43	+1.3
4,409,348	-		HGI48_RS19745	0.43	-0.5
4,409,362	-		HGI48_RS19745	0.44	-1.3
4,409,362	-		HGI48_RS19745	0.44	-1.2
4,409,452	+		HGI48_RS19745	0.50	-1.6
4,409,554	+				-0.8
4,409,555	-		HGI48_RS19745	0.58	-2.3
4,409,557	+		HGI48_RS19745	0.58	-0.8
4,409,557	+		HGI48_RS19745	0.58	-0.2
4,409,558	-		HGI48_RS19745	0.58	+0.5
4,409,558	-		HGI48_RS19745	0.58	+1.5
4,409,558	-		HGI48_RS19745	0.58	-0.1
4,409,558	-		HGI48_RS19745	0.58	-2.1
4,409,575	+		HGI48_RS19745	0.59	-2.4
4,409,649	-		HGI48_RS19745	0.64	-1.8
4,409,653	+		HGI48_RS19745	0.64	-1.2
4,409,665	+		HGI48_RS19745	0.65	-3.2
4,409,666	-		HGI48_RS19745	0.65	-2.4
4,409,841	+		HGI48_RS19745	0.78	-0.1
4,409,841	+		HGI48_RS19745	0.78	-0.6
4,409,842	-		HGI48_RS19745	0.78	-1.8
4,409,842	-		HGI48_RS19745	0.78	-1.2
4,409,842	-		HGI48_RS19745	0.78	-1.6
4,409,890	-				-0.2
4,409,890	-		HGI48_RS19745	0.81	-1.2
4,409,890	-		HGI48_RS19745	0.81	-0.2
4,410,063	+				-2.2
4,410,063	+				-2.8
4,410,064	-				-1.8
4,410,064	-				-1.6
4,410,182	+				-0.8
4,410,209	+				+1.5
4,410,210	-				-0.6
4,410,210	-				-1.3
4,410,210	-				+1.2
4,410,291	-		HGI48_RS19750	0.19	-1.8
4,410,525	+		HGI48_RS19750	0.52	-3.2
4,410,567	-		HGI48_RS19750	0.58	-0.4
4,410,630	+		HGI48_RS19750	0.67	-1.9
4,410,631	-		HGI48_RS19750	0.67	-1.0
4,410,631	-		HGI48_RS19750	0.67	+0.6
4,410,631	-		HGI48_RS19750	0.67	-0.2
4,410,774	+		HGI48_RS19750	0.87	+0.4
4,410,803	+				-0.5
4,410,857	+				-2.9
4,410,892	+				-0.2
4,410,912	+				-0.6
4,410,913	-				+0.0
4,410,932	+				-1.2
4,410,973	+				-1.2
4,410,975	+				-2.0
4,410,975	+				+0.3
4,410,975	+				-0.9
4,410,976	-				-0.6
4,410,976	-				-0.2
4,410,976	-				+1.0
4,410,976	-				+0.4
4,410,976	-				+0.2
4,410,976	-				-0.3
4,410,977	+				+0.0
4,410,977	+				-0.2
4,410,977	+				-0.8
4,410,977	+				+0.8
4,410,977	+				+0.1
4,410,978	-				-0.7
4,410,978	-				-1.8
4,410,978	-				+0.6
4,410,978	-				+1.0
4,410,978	-				+1.2
4,410,978	-				+1.2
4,410,978	-				-0.4
4,410,978	-				-0.1
4,411,013	-				-1.0
4,411,019	+				+2.9
4,411,020	-				-1.5
4,411,080	-				+0.5
4,411,080	-				-0.5
4,411,084	+				-1.8
4,411,084	+				-0.4
4,411,085	-				+0.7
4,411,085	-				-0.0
4,411,085	-				+0.5
4,411,103	+				-1.4
4,411,103	+				-0.5
4,411,103	+				-0.3
4,411,103	+				+0.1
4,411,104	-				-0.6
4,411,104	-				-1.2
4,411,104	-				+0.8
4,411,104	-				-0.2
4,411,104	-				+0.2
4,411,104	-				+0.6
4,411,105	+				-0.8
4,411,115	-				-1.5
4,411,123	+				-1.5
4,411,123	+				+0.8
4,411,124	-				-2.0
4,411,171	+				-1.5
4,411,171	+				+0.8
4,411,172	-				-2.3
4,411,198	+		HGI48_RS19755	0.11	+0.5
4,411,198	+		HGI48_RS19755	0.11	-0.2
4,411,198	+		HGI48_RS19755	0.11	-1.2
4,411,198	+		HGI48_RS19755	0.11	-0.5
4,411,198	+		HGI48_RS19755	0.11	+1.1
4,411,199	-		HGI48_RS19755	0.11	-0.5
4,411,199	-		HGI48_RS19755	0.11	+1.4
4,411,282	+				+0.8
4,411,283	-		HGI48_RS19755	0.26	+0.4
4,411,283	-		HGI48_RS19755	0.26	+1.4
4,411,288	+		HGI48_RS19755	0.27	-2.2
4,411,288	+				-0.2
4,411,289	-				+1.5
4,411,289	-		HGI48_RS19755	0.28	-0.2
4,411,289	-		HGI48_RS19755	0.28	-0.4
4,411,289	-		HGI48_RS19755	0.28	-0.6
4,411,289	-				-0.2
4,411,370	-		HGI48_RS19755	0.43	+0.4
4,411,370	-		HGI48_RS19755	0.43	+1.3
4,411,370	-		HGI48_RS19755	0.43	-0.6
4,411,370	-		HGI48_RS19755	0.43	+1.6
4,411,472	+		HGI48_RS19755	0.62	-1.4
4,411,472	+		HGI48_RS19755	0.62	+1.9
4,411,472	+		HGI48_RS19755	0.62	-0.4
4,411,472	+		HGI48_RS19755	0.62	+0.5
4,411,473	-		HGI48_RS19755	0.62	-1.2
4,411,473	-		HGI48_RS19755	0.62	-1.8
4,411,473	-		HGI48_RS19755	0.62	-1.0
4,411,473	-				+0.2
4,411,473	-		HGI48_RS19755	0.62	-1.4
4,411,474	+		HGI48_RS19755	0.62	-2.0
4,411,474	+		HGI48_RS19755	0.62	-0.3
4,411,475	-		HGI48_RS19755	0.62	-0.4
4,411,489	+		HGI48_RS19755	0.65	-1.8
4,411,489	+		HGI48_RS19755	0.65	+0.8
4,411,489	+		HGI48_RS19755	0.65	+0.8
4,411,489	+		HGI48_RS19755	0.65	-1.2
4,411,489	+		HGI48_RS19755	0.65	-1.5
4,411,489	+		HGI48_RS19755	0.65	+0.5
4,411,489	+		HGI48_RS19755	0.65	-1.4
4,411,489	+		HGI48_RS19755	0.65	-1.4
4,411,490	-		HGI48_RS19755	0.65	+0.6
4,411,490	-		HGI48_RS19755	0.65	-2.8
4,411,490	-		HGI48_RS19755	0.65	-0.1
4,411,490	-		HGI48_RS19755	0.65	-0.8
4,411,490	-		HGI48_RS19755	0.65	-0.3
4,411,490	-		HGI48_RS19755	0.65	-0.2
4,411,490	-				+0.2
4,411,557	+		HGI48_RS19755	0.77	+0.8
4,411,560	+		HGI48_RS19755	0.78	-1.9
4,411,561	-				+1.2
4,411,561	-		HGI48_RS19755	0.78	-1.8
4,411,561	-		HGI48_RS19755	0.78	-1.1
4,411,585	+		HGI48_RS19755	0.83	+0.9
4,411,585	+		HGI48_RS19755	0.83	-0.4
4,411,586	-		HGI48_RS19755	0.83	-1.0
4,411,586	-				+0.8
4,411,586	-		HGI48_RS19755	0.83	-0.5
4,411,586	-		HGI48_RS19755	0.83	+0.3
4,411,593	+		HGI48_RS19755	0.84	+0.2
4,411,604	-		HGI48_RS19755	0.86	-2.0
4,411,633	-				+0.2
4,411,645	-				-1.1
4,411,691	+				+0.2
4,411,692	-				-0.2
4,411,692	-				+0.6
4,411,724	+				+0.2
4,411,724	+				-0.0
4,411,724	+				+0.4
4,411,725	-				-1.3
4,411,725	-				+0.8
4,411,725	-				+0.1
4,411,769	+				-0.2
4,411,770	-				+0.5
4,411,868	+				+0.2
4,411,869	-				-0.4