Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS19745

Experiment: PDB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS19740 and HGI48_RS19745 are separated by 97 nucleotidesHGI48_RS19745 and HGI48_RS19750 overlap by 4 nucleotidesHGI48_RS19750 and HGI48_RS19755 are separated by 270 nucleotides HGI48_RS19740: HGI48_RS19740 - phosphoenolpyruvate carboxykinase (ATP), at 4,407,025 to 4,408,644 _RS19740 HGI48_RS19745: HGI48_RS19745 - two-component system sensor histidine kinase EnvZ, at 4,408,742 to 4,410,154 _RS19745 HGI48_RS19750: HGI48_RS19750 - two-component system response regulator OmpR, at 4,410,151 to 4,410,870 _RS19750 HGI48_RS19755: HGI48_RS19755 - transcription elongation factor GreB, at 4,411,141 to 4,411,677 _RS19755 Position (kb) 4408 4409 4410 4411Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 4407.877 kb on + strand, within HGI48_RS19740at 4407.877 kb on + strand, within HGI48_RS19740at 4407.878 kb on - strand, within HGI48_RS19740at 4407.919 kb on - strand, within HGI48_RS19740at 4407.922 kb on + strand, within HGI48_RS19740at 4407.922 kb on + strand, within HGI48_RS19740at 4407.922 kb on + strand, within HGI48_RS19740at 4407.923 kb on - strand, within HGI48_RS19740at 4407.923 kb on - strand, within HGI48_RS19740at 4408.027 kb on + strand, within HGI48_RS19740at 4408.036 kb on + strand, within HGI48_RS19740at 4408.036 kb on + strand, within HGI48_RS19740at 4408.036 kb on + strandat 4408.036 kb on + strand, within HGI48_RS19740at 4408.036 kb on + strand, within HGI48_RS19740at 4408.037 kb on - strand, within HGI48_RS19740at 4408.037 kb on - strand, within HGI48_RS19740at 4408.037 kb on - strand, within HGI48_RS19740at 4408.037 kb on - strandat 4408.037 kb on - strand, within HGI48_RS19740at 4408.037 kb on - strand, within HGI48_RS19740at 4408.047 kb on + strand, within HGI48_RS19740at 4408.330 kb on + strand, within HGI48_RS19740at 4408.331 kb on - strand, within HGI48_RS19740at 4408.368 kb on + strand, within HGI48_RS19740at 4408.368 kb on + strand, within HGI48_RS19740at 4408.369 kb on - strandat 4408.369 kb on - strand, within HGI48_RS19740at 4408.369 kb on - strand, within HGI48_RS19740at 4408.369 kb on - strand, within HGI48_RS19740at 4408.419 kb on + strand, within HGI48_RS19740at 4408.420 kb on - strandat 4408.450 kb on - strand, within HGI48_RS19740at 4408.519 kb on + strandat 4408.519 kb on + strandat 4408.519 kb on + strandat 4408.519 kb on + strandat 4408.519 kb on + strandat 4408.519 kb on + strandat 4408.519 kb on + strandat 4408.519 kb on + strandat 4408.519 kb on + strandat 4408.519 kb on + strandat 4408.519 kb on + strandat 4408.519 kb on + strandat 4408.520 kb on - strandat 4408.520 kb on - strandat 4408.520 kb on - strandat 4408.520 kb on - strandat 4408.520 kb on - strandat 4408.520 kb on - strandat 4408.520 kb on - strandat 4408.520 kb on - strandat 4408.520 kb on - strandat 4408.591 kb on + strandat 4408.591 kb on + strandat 4408.591 kb on + strandat 4408.591 kb on + strandat 4408.591 kb on + strandat 4408.591 kb on + strandat 4408.592 kb on - strandat 4408.592 kb on - strandat 4408.592 kb on - strandat 4408.592 kb on - strandat 4408.592 kb on - strandat 4408.592 kb on - strandat 4408.592 kb on - strandat 4408.592 kb on - strandat 4408.593 kb on + strandat 4408.593 kb on + strandat 4408.594 kb on - strandat 4408.656 kb on - strandat 4408.656 kb on - strandat 4408.735 kb on + strandat 4408.736 kb on - strandat 4408.744 kb on - strandat 4408.744 kb on - strandat 4408.847 kb on + strandat 4408.848 kb on - strandat 4408.848 kb on - strandat 4408.851 kb on + strandat 4408.851 kb on + strandat 4408.851 kb on + strandat 4408.852 kb on - strandat 4408.852 kb on - strandat 4408.852 kb on - strandat 4408.918 kb on + strand, within HGI48_RS19745at 4408.921 kb on + strand, within HGI48_RS19745at 4408.921 kb on + strand, within HGI48_RS19745at 4408.922 kb on - strand, within HGI48_RS19745at 4409.341 kb on + strand, within HGI48_RS19745at 4409.342 kb on - strand, within HGI48_RS19745at 4409.347 kb on + strandat 4409.348 kb on - strand, within HGI48_RS19745at 4409.348 kb on - strand, within HGI48_RS19745at 4409.362 kb on - strand, within HGI48_RS19745at 4409.362 kb on - strand, within HGI48_RS19745at 4409.452 kb on + strand, within HGI48_RS19745at 4409.554 kb on + strandat 4409.555 kb on - strand, within HGI48_RS19745at 4409.557 kb on + strand, within HGI48_RS19745at 4409.557 kb on + strand, within HGI48_RS19745at 4409.558 kb on - strand, within HGI48_RS19745at 4409.558 kb on - strand, within HGI48_RS19745at 4409.558 kb on - strand, within HGI48_RS19745at 4409.558 kb on - strand, within HGI48_RS19745at 4409.575 kb on + strand, within HGI48_RS19745at 4409.649 kb on - strand, within HGI48_RS19745at 4409.653 kb on + strand, within HGI48_RS19745at 4409.665 kb on + strand, within HGI48_RS19745at 4409.666 kb on - strand, within HGI48_RS19745at 4409.841 kb on + strand, within HGI48_RS19745at 4409.841 kb on + strand, within HGI48_RS19745at 4409.842 kb on - strand, within HGI48_RS19745at 4409.842 kb on - strand, within HGI48_RS19745at 4409.842 kb on - strand, within HGI48_RS19745at 4409.890 kb on - strandat 4409.890 kb on - strand, within HGI48_RS19745at 4409.890 kb on - strand, within HGI48_RS19745at 4410.063 kb on + strandat 4410.063 kb on + strandat 4410.064 kb on - strandat 4410.064 kb on - strandat 4410.182 kb on + strandat 4410.209 kb on + strandat 4410.210 kb on - strandat 4410.210 kb on - strandat 4410.210 kb on - strandat 4410.291 kb on - strand, within HGI48_RS19750at 4410.525 kb on + strand, within HGI48_RS19750at 4410.567 kb on - strand, within HGI48_RS19750at 4410.630 kb on + strand, within HGI48_RS19750at 4410.631 kb on - strand, within HGI48_RS19750at 4410.631 kb on - strand, within HGI48_RS19750at 4410.631 kb on - strand, within HGI48_RS19750at 4410.774 kb on + strand, within HGI48_RS19750at 4410.803 kb on + strandat 4410.857 kb on + strandat 4410.892 kb on + strandat 4410.912 kb on + strandat 4410.913 kb on - strandat 4410.932 kb on + strandat 4410.973 kb on + strandat 4410.975 kb on + strandat 4410.975 kb on + strandat 4410.975 kb on + strandat 4410.976 kb on - strandat 4410.976 kb on - strandat 4410.976 kb on - strandat 4410.976 kb on - strandat 4410.976 kb on - strandat 4410.976 kb on - strandat 4410.977 kb on + strandat 4410.977 kb on + strandat 4410.977 kb on + strandat 4410.977 kb on + strandat 4410.977 kb on + strandat 4410.978 kb on - strandat 4410.978 kb on - strandat 4410.978 kb on - strandat 4410.978 kb on - strandat 4410.978 kb on - strandat 4410.978 kb on - strandat 4410.978 kb on - strandat 4410.978 kb on - strandat 4411.013 kb on - strandat 4411.019 kb on + strandat 4411.020 kb on - strandat 4411.080 kb on - strandat 4411.080 kb on - strandat 4411.084 kb on + strandat 4411.084 kb on + strandat 4411.085 kb on - strandat 4411.085 kb on - strandat 4411.085 kb on - strandat 4411.103 kb on + strandat 4411.103 kb on + strandat 4411.103 kb on + strandat 4411.103 kb on + strandat 4411.104 kb on - strandat 4411.104 kb on - strandat 4411.104 kb on - strandat 4411.104 kb on - strandat 4411.104 kb on - strandat 4411.104 kb on - strandat 4411.105 kb on + strandat 4411.115 kb on - strandat 4411.123 kb on + strandat 4411.123 kb on + strandat 4411.124 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PDB
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4,407,877 + HGI48_RS19740 0.53 +1.0
4,407,877 + HGI48_RS19740 0.53 +1.4
4,407,878 - HGI48_RS19740 0.53 +1.4
4,407,919 - HGI48_RS19740 0.55 -0.5
4,407,922 + HGI48_RS19740 0.55 +0.8
4,407,922 + HGI48_RS19740 0.55 -1.0
4,407,922 + HGI48_RS19740 0.55 +1.6
4,407,923 - HGI48_RS19740 0.55 -0.0
4,407,923 - HGI48_RS19740 0.55 +0.8
4,408,027 + HGI48_RS19740 0.62 -0.3
4,408,036 + HGI48_RS19740 0.62 -0.1
4,408,036 + HGI48_RS19740 0.62 -0.0
4,408,036 + +1.2
4,408,036 + HGI48_RS19740 0.62 +0.2
4,408,036 + HGI48_RS19740 0.62 +0.0
4,408,037 - HGI48_RS19740 0.62 +0.3
4,408,037 - HGI48_RS19740 0.62 +1.0
4,408,037 - HGI48_RS19740 0.62 +0.3
4,408,037 - -0.8
4,408,037 - HGI48_RS19740 0.62 +0.4
4,408,037 - HGI48_RS19740 0.62 -0.1
4,408,047 + HGI48_RS19740 0.63 +2.1
4,408,330 + HGI48_RS19740 0.81 +0.8
4,408,331 - HGI48_RS19740 0.81 -0.4
4,408,368 + HGI48_RS19740 0.83 -3.8
4,408,368 + HGI48_RS19740 0.83 -0.2
4,408,369 - +0.8
4,408,369 - HGI48_RS19740 0.83 +0.8
4,408,369 - HGI48_RS19740 0.83 -0.2
4,408,369 - HGI48_RS19740 0.83 -1.7
4,408,419 + HGI48_RS19740 0.86 +0.4
4,408,420 - -0.2
4,408,450 - HGI48_RS19740 0.88 +0.6
4,408,519 + +0.0
4,408,519 + -0.1
4,408,519 + -1.2
4,408,519 + +0.5
4,408,519 + +2.4
4,408,519 + +0.1
4,408,519 + +0.1
4,408,519 + +1.8
4,408,519 + -1.2
4,408,519 + -1.8
4,408,519 + -1.6
4,408,519 + -0.6
4,408,520 - +1.8
4,408,520 - -0.4
4,408,520 - +0.8
4,408,520 - +0.1
4,408,520 - +0.5
4,408,520 - +1.9
4,408,520 - -1.6
4,408,520 - -0.2
4,408,520 - +0.2
4,408,591 + -0.6
4,408,591 + -0.2
4,408,591 + +1.0
4,408,591 + +0.2
4,408,591 + +0.8
4,408,591 + +0.2
4,408,592 - +2.1
4,408,592 - +0.4
4,408,592 - -0.6
4,408,592 - -1.8
4,408,592 - -1.3
4,408,592 - -0.6
4,408,592 - -1.6
4,408,592 - -0.2
4,408,593 + +2.1
4,408,593 + +0.1
4,408,594 - +1.2
4,408,656 - +0.8
4,408,656 - +0.1
4,408,735 + -2.4
4,408,736 - -0.0
4,408,744 - -1.4
4,408,744 - +0.0
4,408,847 + -0.1
4,408,848 - -0.2
4,408,848 - -0.2
4,408,851 + -1.4
4,408,851 + -2.3
4,408,851 + -1.6
4,408,852 - +0.8
4,408,852 - -1.8
4,408,852 - +0.1
4,408,918 + HGI48_RS19745 0.12 -0.2
4,408,921 + HGI48_RS19745 0.13 -1.8
4,408,921 + HGI48_RS19745 0.13 -3.5
4,408,922 - HGI48_RS19745 0.13 -0.8
4,409,341 + HGI48_RS19745 0.42 -0.6
4,409,342 - HGI48_RS19745 0.42 -0.4
4,409,347 + -0.8
4,409,348 - HGI48_RS19745 0.43 +1.3
4,409,348 - HGI48_RS19745 0.43 -0.5
4,409,362 - HGI48_RS19745 0.44 -1.3
4,409,362 - HGI48_RS19745 0.44 -1.2
4,409,452 + HGI48_RS19745 0.50 -1.6
4,409,554 + -0.8
4,409,555 - HGI48_RS19745 0.58 -2.3
4,409,557 + HGI48_RS19745 0.58 -0.8
4,409,557 + HGI48_RS19745 0.58 -0.2
4,409,558 - HGI48_RS19745 0.58 +0.5
4,409,558 - HGI48_RS19745 0.58 +1.5
4,409,558 - HGI48_RS19745 0.58 -0.1
4,409,558 - HGI48_RS19745 0.58 -2.1
4,409,575 + HGI48_RS19745 0.59 -2.4
4,409,649 - HGI48_RS19745 0.64 -1.8
4,409,653 + HGI48_RS19745 0.64 -1.2
4,409,665 + HGI48_RS19745 0.65 -3.2
4,409,666 - HGI48_RS19745 0.65 -2.4
4,409,841 + HGI48_RS19745 0.78 -0.1
4,409,841 + HGI48_RS19745 0.78 -0.6
4,409,842 - HGI48_RS19745 0.78 -1.8
4,409,842 - HGI48_RS19745 0.78 -1.2
4,409,842 - HGI48_RS19745 0.78 -1.6
4,409,890 - -0.2
4,409,890 - HGI48_RS19745 0.81 -1.2
4,409,890 - HGI48_RS19745 0.81 -0.2
4,410,063 + -2.2
4,410,063 + -2.8
4,410,064 - -1.8
4,410,064 - -1.6
4,410,182 + -0.8
4,410,209 + +1.5
4,410,210 - -0.6
4,410,210 - -1.3
4,410,210 - +1.2
4,410,291 - HGI48_RS19750 0.19 -1.8
4,410,525 + HGI48_RS19750 0.52 -3.2
4,410,567 - HGI48_RS19750 0.58 -0.4
4,410,630 + HGI48_RS19750 0.67 -1.9
4,410,631 - HGI48_RS19750 0.67 -1.0
4,410,631 - HGI48_RS19750 0.67 +0.6
4,410,631 - HGI48_RS19750 0.67 -0.2
4,410,774 + HGI48_RS19750 0.87 +0.4
4,410,803 + -0.5
4,410,857 + -2.9
4,410,892 + -0.2
4,410,912 + -0.6
4,410,913 - +0.0
4,410,932 + -1.2
4,410,973 + -1.2
4,410,975 + -2.0
4,410,975 + +0.3
4,410,975 + -0.9
4,410,976 - -0.6
4,410,976 - -0.2
4,410,976 - +1.0
4,410,976 - +0.4
4,410,976 - +0.2
4,410,976 - -0.3
4,410,977 + +0.0
4,410,977 + -0.2
4,410,977 + -0.8
4,410,977 + +0.8
4,410,977 + +0.1
4,410,978 - -0.7
4,410,978 - -1.8
4,410,978 - +0.6
4,410,978 - +1.0
4,410,978 - +1.2
4,410,978 - +1.2
4,410,978 - -0.4
4,410,978 - -0.1
4,411,013 - -1.0
4,411,019 + +2.9
4,411,020 - -1.5
4,411,080 - +0.5
4,411,080 - -0.5
4,411,084 + -1.8
4,411,084 + -0.4
4,411,085 - +0.7
4,411,085 - -0.0
4,411,085 - +0.5
4,411,103 + -1.4
4,411,103 + -0.5
4,411,103 + -0.3
4,411,103 + +0.1
4,411,104 - -0.6
4,411,104 - -1.2
4,411,104 - +0.8
4,411,104 - -0.2
4,411,104 - +0.2
4,411,104 - +0.6
4,411,105 + -0.8
4,411,115 - -1.5
4,411,123 + -1.5
4,411,123 + +0.8
4,411,124 - -2.0

Or see this region's nucleotide sequence