Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS19745

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,407,877	+		HGI48_RS19740	0.53	+1.0
4,407,877	+		HGI48_RS19740	0.53	+1.4
4,407,878	-		HGI48_RS19740	0.53	+1.4
4,407,919	-		HGI48_RS19740	0.55	-0.5
4,407,922	+		HGI48_RS19740	0.55	+0.8
4,407,922	+		HGI48_RS19740	0.55	-1.0
4,407,922	+		HGI48_RS19740	0.55	+1.6
4,407,923	-		HGI48_RS19740	0.55	-0.0
4,407,923	-		HGI48_RS19740	0.55	+0.8
4,408,027	+		HGI48_RS19740	0.62	-0.3
4,408,036	+		HGI48_RS19740	0.62	-0.1
4,408,036	+		HGI48_RS19740	0.62	-0.0
4,408,036	+				+1.2
4,408,036	+		HGI48_RS19740	0.62	+0.2
4,408,036	+		HGI48_RS19740	0.62	+0.0
4,408,037	-		HGI48_RS19740	0.62	+0.3
4,408,037	-		HGI48_RS19740	0.62	+1.0
4,408,037	-		HGI48_RS19740	0.62	+0.3
4,408,037	-				-0.8
4,408,037	-		HGI48_RS19740	0.62	+0.4
4,408,037	-		HGI48_RS19740	0.62	-0.1
4,408,047	+		HGI48_RS19740	0.63	+2.1
4,408,330	+		HGI48_RS19740	0.81	+0.8
4,408,331	-		HGI48_RS19740	0.81	-0.4
4,408,368	+		HGI48_RS19740	0.83	-3.8
4,408,368	+		HGI48_RS19740	0.83	-0.2
4,408,369	-				+0.8
4,408,369	-		HGI48_RS19740	0.83	+0.8
4,408,369	-		HGI48_RS19740	0.83	-0.2
4,408,369	-		HGI48_RS19740	0.83	-1.7
4,408,419	+		HGI48_RS19740	0.86	+0.4
4,408,420	-				-0.2
4,408,450	-		HGI48_RS19740	0.88	+0.6
4,408,519	+				+0.0
4,408,519	+				-0.1
4,408,519	+				-1.2
4,408,519	+				+0.5
4,408,519	+				+2.4
4,408,519	+				+0.1
4,408,519	+				+0.1
4,408,519	+				+1.8
4,408,519	+				-1.2
4,408,519	+				-1.8
4,408,519	+				-1.6
4,408,519	+				-0.6
4,408,520	-				+1.8
4,408,520	-				-0.4
4,408,520	-				+0.8
4,408,520	-				+0.1
4,408,520	-				+0.5
4,408,520	-				+1.9
4,408,520	-				-1.6
4,408,520	-				-0.2
4,408,520	-				+0.2
4,408,591	+				-0.6
4,408,591	+				-0.2
4,408,591	+				+1.0
4,408,591	+				+0.2
4,408,591	+				+0.8
4,408,591	+				+0.2
4,408,592	-				+2.1
4,408,592	-				+0.4
4,408,592	-				-0.6
4,408,592	-				-1.8
4,408,592	-				-1.3
4,408,592	-				-0.6
4,408,592	-				-1.6
4,408,592	-				-0.2
4,408,593	+				+2.1
4,408,593	+				+0.1
4,408,594	-				+1.2
4,408,656	-				+0.8
4,408,656	-				+0.1
4,408,735	+				-2.4
4,408,736	-				-0.0
4,408,744	-				-1.4
4,408,744	-				+0.0
4,408,847	+				-0.1
4,408,848	-				-0.2
4,408,848	-				-0.2
4,408,851	+				-1.4
4,408,851	+				-2.3
4,408,851	+				-1.6
4,408,852	-				+0.8
4,408,852	-				-1.8
4,408,852	-				+0.1
4,408,918	+		HGI48_RS19745	0.12	-0.2
4,408,921	+		HGI48_RS19745	0.13	-1.8
4,408,921	+		HGI48_RS19745	0.13	-3.5
4,408,922	-		HGI48_RS19745	0.13	-0.8
4,409,341	+		HGI48_RS19745	0.42	-0.6
4,409,342	-		HGI48_RS19745	0.42	-0.4
4,409,347	+				-0.8
4,409,348	-		HGI48_RS19745	0.43	+1.3
4,409,348	-		HGI48_RS19745	0.43	-0.5
4,409,362	-		HGI48_RS19745	0.44	-1.3
4,409,362	-		HGI48_RS19745	0.44	-1.2
4,409,452	+		HGI48_RS19745	0.50	-1.6
4,409,554	+				-0.8
4,409,555	-		HGI48_RS19745	0.58	-2.3
4,409,557	+		HGI48_RS19745	0.58	-0.8
4,409,557	+		HGI48_RS19745	0.58	-0.2
4,409,558	-		HGI48_RS19745	0.58	+0.5
4,409,558	-		HGI48_RS19745	0.58	+1.5
4,409,558	-		HGI48_RS19745	0.58	-0.1
4,409,558	-		HGI48_RS19745	0.58	-2.1
4,409,575	+		HGI48_RS19745	0.59	-2.4
4,409,649	-		HGI48_RS19745	0.64	-1.8
4,409,653	+		HGI48_RS19745	0.64	-1.2
4,409,665	+		HGI48_RS19745	0.65	-3.2
4,409,666	-		HGI48_RS19745	0.65	-2.4
4,409,841	+		HGI48_RS19745	0.78	-0.1
4,409,841	+		HGI48_RS19745	0.78	-0.6
4,409,842	-		HGI48_RS19745	0.78	-1.8
4,409,842	-		HGI48_RS19745	0.78	-1.2
4,409,842	-		HGI48_RS19745	0.78	-1.6
4,409,890	-				-0.2
4,409,890	-		HGI48_RS19745	0.81	-1.2
4,409,890	-		HGI48_RS19745	0.81	-0.2
4,410,063	+				-2.2
4,410,063	+				-2.8
4,410,064	-				-1.8
4,410,064	-				-1.6
4,410,182	+				-0.8
4,410,209	+				+1.5
4,410,210	-				-0.6
4,410,210	-				-1.3
4,410,210	-				+1.2
4,410,291	-		HGI48_RS19750	0.19	-1.8
4,410,525	+		HGI48_RS19750	0.52	-3.2
4,410,567	-		HGI48_RS19750	0.58	-0.4
4,410,630	+		HGI48_RS19750	0.67	-1.9
4,410,631	-		HGI48_RS19750	0.67	-1.0
4,410,631	-		HGI48_RS19750	0.67	+0.6
4,410,631	-		HGI48_RS19750	0.67	-0.2
4,410,774	+		HGI48_RS19750	0.87	+0.4
4,410,803	+				-0.5
4,410,857	+				-2.9
4,410,892	+				-0.2
4,410,912	+				-0.6
4,410,913	-				+0.0
4,410,932	+				-1.2
4,410,973	+				-1.2
4,410,975	+				-2.0
4,410,975	+				+0.3
4,410,975	+				-0.9
4,410,976	-				-0.6
4,410,976	-				-0.2
4,410,976	-				+1.0
4,410,976	-				+0.4
4,410,976	-				+0.2
4,410,976	-				-0.3
4,410,977	+				+0.0
4,410,977	+				-0.2
4,410,977	+				-0.8
4,410,977	+				+0.8
4,410,977	+				+0.1
4,410,978	-				-0.7
4,410,978	-				-1.8
4,410,978	-				+0.6
4,410,978	-				+1.0
4,410,978	-				+1.2
4,410,978	-				+1.2
4,410,978	-				-0.4
4,410,978	-				-0.1
4,411,013	-				-1.0
4,411,019	+				+2.9
4,411,020	-				-1.5
4,411,080	-				+0.5
4,411,080	-				-0.5
4,411,084	+				-1.8
4,411,084	+				-0.4
4,411,085	-				+0.7
4,411,085	-				-0.0
4,411,085	-				+0.5
4,411,103	+				-1.4
4,411,103	+				-0.5
4,411,103	+				-0.3
4,411,103	+				+0.1
4,411,104	-				-0.6
4,411,104	-				-1.2
4,411,104	-				+0.8
4,411,104	-				-0.2
4,411,104	-				+0.2
4,411,104	-				+0.6
4,411,105	+				-0.8
4,411,115	-				-1.5
4,411,123	+				-1.5
4,411,123	+				+0.8
4,411,124	-				-2.0