Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS19065 and HGI48_RS19070 are separated by 12 nucleotides HGI48_RS19070 and HGI48_RS19075 are separated by 14 nucleotides HGI48_RS19075 and HGI48_RS19080 are separated by 350 nucleotides HGI48_RS19080 and HGI48_RS19085 are separated by 155 nucleotides
HGI48_RS19065: HGI48_RS19065 - succinate dehydrogenase/fumarate reductase iron-sulfur subunit, at 4,280,671 to 4,281,405
_RS19065
HGI48_RS19070: HGI48_RS19070 - fumarate reductase subunit FrdC, at 4,281,418 to 4,281,813
_RS19070
HGI48_RS19075: HGI48_RS19075 - fumarate reductase subunit FrdD, at 4,281,828 to 4,282,184
_RS19075
HGI48_RS19080: HGI48_RS19080 - DMT family protein, at 4,282,535 to 4,282,888
_RS19080
HGI48_RS19085: HGI48_RS19085 - elongation factor P, at 4,283,044 to 4,283,610
_RS19085
Position (kb) 4281
4282
4283 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4280.923 kb on + strand, within HGI48_RS19065 at 4280.923 kb on + strand, within HGI48_RS19065 at 4280.923 kb on + strand, within HGI48_RS19065 at 4280.924 kb on - strand, within HGI48_RS19065 at 4280.925 kb on + strand, within HGI48_RS19065 at 4280.926 kb on - strand, within HGI48_RS19065 at 4281.028 kb on + strand, within HGI48_RS19065 at 4281.028 kb on + strand, within HGI48_RS19065 at 4281.029 kb on - strand, within HGI48_RS19065 at 4281.029 kb on - strand, within HGI48_RS19065 at 4281.049 kb on - strand, within HGI48_RS19065 at 4281.097 kb on + strand, within HGI48_RS19065 at 4281.097 kb on + strand, within HGI48_RS19065 at 4281.097 kb on + strand, within HGI48_RS19065 at 4281.097 kb on + strand, within HGI48_RS19065 at 4281.097 kb on + strand, within HGI48_RS19065 at 4281.097 kb on + strand, within HGI48_RS19065 at 4281.098 kb on - strand, within HGI48_RS19065 at 4281.209 kb on - strand, within HGI48_RS19065 at 4281.285 kb on + strand, within HGI48_RS19065 at 4281.286 kb on - strand, within HGI48_RS19065 at 4281.355 kb on - strand at 4281.392 kb on + strand at 4281.392 kb on + strand at 4281.392 kb on + strand at 4281.392 kb on + strand at 4281.392 kb on + strand at 4281.392 kb on + strand at 4281.392 kb on + strand at 4281.393 kb on - strand at 4281.393 kb on - strand at 4281.393 kb on - strand at 4281.404 kb on - strand at 4281.432 kb on + strand at 4281.433 kb on - strand at 4281.433 kb on - strand at 4281.433 kb on - strand at 4281.439 kb on + strand at 4281.439 kb on + strand at 4281.439 kb on + strand at 4281.439 kb on + strand at 4281.440 kb on - strand at 4281.440 kb on - strand at 4281.440 kb on - strand at 4281.440 kb on - strand at 4281.440 kb on - strand at 4281.493 kb on + strand, within HGI48_RS19070 at 4281.493 kb on + strand, within HGI48_RS19070 at 4281.493 kb on + strand, within HGI48_RS19070 at 4281.493 kb on + strand, within HGI48_RS19070 at 4281.494 kb on - strand, within HGI48_RS19070 at 4281.495 kb on + strand, within HGI48_RS19070 at 4281.495 kb on + strand, within HGI48_RS19070 at 4281.495 kb on + strand, within HGI48_RS19070 at 4281.623 kb on + strand, within HGI48_RS19070 at 4281.636 kb on + strand, within HGI48_RS19070 at 4281.637 kb on - strand, within HGI48_RS19070 at 4281.637 kb on - strand, within HGI48_RS19070 at 4281.705 kb on + strand, within HGI48_RS19070 at 4281.705 kb on + strand, within HGI48_RS19070 at 4281.705 kb on + strand, within HGI48_RS19070 at 4281.834 kb on - strand at 4281.834 kb on - strand at 4281.978 kb on + strand, within HGI48_RS19075 at 4281.978 kb on + strand at 4281.978 kb on + strand, within HGI48_RS19075 at 4281.979 kb on - strand, within HGI48_RS19075 at 4282.128 kb on + strand, within HGI48_RS19075 at 4282.128 kb on + strand, within HGI48_RS19075 at 4282.129 kb on - strand, within HGI48_RS19075 at 4282.129 kb on - strand, within HGI48_RS19075 at 4282.174 kb on + strand at 4282.174 kb on + strand at 4282.174 kb on + strand at 4282.175 kb on - strand at 4282.175 kb on - strand at 4282.175 kb on - strand at 4282.182 kb on + strand at 4282.182 kb on + strand at 4282.182 kb on + strand at 4282.182 kb on + strand at 4282.182 kb on + strand at 4282.183 kb on - strand at 4282.183 kb on - strand at 4282.230 kb on + strand at 4282.231 kb on - strand at 4282.273 kb on + strand at 4282.274 kb on - strand at 4282.274 kb on - strand at 4282.274 kb on - strand at 4282.274 kb on - strand at 4282.274 kb on - strand at 4282.283 kb on + strand at 4282.290 kb on + strand at 4282.325 kb on - strand at 4282.342 kb on - strand at 4282.358 kb on + strand at 4282.423 kb on + strand at 4282.442 kb on + strand at 4282.457 kb on + strand at 4282.457 kb on + strand at 4282.458 kb on - strand at 4282.518 kb on + strand at 4282.525 kb on - strand at 4282.600 kb on + strand, within HGI48_RS19080 at 4282.601 kb on - strand, within HGI48_RS19080 at 4282.601 kb on - strand, within HGI48_RS19080 at 4282.601 kb on - strand, within HGI48_RS19080 at 4282.602 kb on + strand, within HGI48_RS19080 at 4282.635 kb on - strand, within HGI48_RS19080 at 4282.649 kb on - strand, within HGI48_RS19080 at 4282.649 kb on - strand, within HGI48_RS19080 at 4282.649 kb on - strand, within HGI48_RS19080 at 4282.667 kb on + strand, within HGI48_RS19080 at 4282.667 kb on + strand, within HGI48_RS19080 at 4282.744 kb on - strand, within HGI48_RS19080 at 4282.757 kb on + strand, within HGI48_RS19080 at 4282.757 kb on + strand, within HGI48_RS19080 at 4282.793 kb on - strand, within HGI48_RS19080 at 4282.793 kb on - strand, within HGI48_RS19080 at 4282.806 kb on + strand, within HGI48_RS19080 at 4282.806 kb on + strand, within HGI48_RS19080 at 4282.821 kb on + strand, within HGI48_RS19080 at 4282.837 kb on + strand, within HGI48_RS19080 at 4282.838 kb on - strand, within HGI48_RS19080 at 4282.838 kb on - strand, within HGI48_RS19080 at 4282.841 kb on + strand, within HGI48_RS19080 at 4282.841 kb on + strand, within HGI48_RS19080 at 4282.841 kb on + strand, within HGI48_RS19080 at 4282.841 kb on + strand, within HGI48_RS19080 at 4282.841 kb on + strand, within HGI48_RS19080 at 4282.842 kb on - strand, within HGI48_RS19080 at 4282.842 kb on - strand, within HGI48_RS19080 at 4282.842 kb on - strand, within HGI48_RS19080 at 4282.842 kb on - strand, within HGI48_RS19080 at 4282.874 kb on - strand at 4282.877 kb on + strand at 4282.877 kb on + strand at 4282.877 kb on + strand at 4282.888 kb on + strand at 4282.889 kb on - strand at 4282.889 kb on - strand at 4282.917 kb on + strand at 4282.918 kb on - strand at 4282.918 kb on - strand at 4282.920 kb on + strand at 4282.920 kb on + strand at 4282.921 kb on - strand at 4282.921 kb on - strand at 4282.921 kb on - strand at 4282.921 kb on - strand at 4282.921 kb on - strand at 4282.921 kb on - strand at 4282.921 kb on - strand at 4282.939 kb on + strand at 4282.939 kb on + strand at 4282.939 kb on + strand at 4282.940 kb on - strand at 4282.940 kb on - strand at 4283.102 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 4,280,923 + HGI48_RS19065 0.34 +0.2 4,280,923 + HGI48_RS19065 0.34 +0.6 4,280,923 + HGI48_RS19065 0.34 -1.8 4,280,924 - HGI48_RS19065 0.34 -0.1 4,280,925 + HGI48_RS19065 0.35 -0.7 4,280,926 - HGI48_RS19065 0.35 +0.0 4,281,028 + HGI48_RS19065 0.49 +1.5 4,281,028 + HGI48_RS19065 0.49 +2.3 4,281,029 - HGI48_RS19065 0.49 -0.8 4,281,029 - HGI48_RS19065 0.49 -0.4 4,281,049 - HGI48_RS19065 0.51 -0.3 4,281,097 + HGI48_RS19065 0.58 -1.3 4,281,097 + HGI48_RS19065 0.58 -1.3 4,281,097 + HGI48_RS19065 0.58 -0.5 4,281,097 + HGI48_RS19065 0.58 -1.3 4,281,097 + HGI48_RS19065 0.58 -2.3 4,281,097 + HGI48_RS19065 0.58 +0.3 4,281,098 - HGI48_RS19065 0.58 +0.7 4,281,209 - HGI48_RS19065 0.73 -0.1 4,281,285 + HGI48_RS19065 0.84 -2.7 4,281,286 - HGI48_RS19065 0.84 +0.6 4,281,355 - +3.2 4,281,392 + +0.3 4,281,392 + +1.0 4,281,392 + -2.7 4,281,392 + -1.2 4,281,392 + -0.1 4,281,392 + +2.1 4,281,392 + +0.3 4,281,393 - -0.1 4,281,393 - +0.5 4,281,393 - -0.3 4,281,404 - -2.6 4,281,432 + -0.1 4,281,433 - +1.2 4,281,433 - -2.2 4,281,433 - -1.3 4,281,439 + +0.0 4,281,439 + +0.7 4,281,439 + +0.4 4,281,439 + +0.0 4,281,440 - -0.6 4,281,440 - +0.3 4,281,440 - -1.0 4,281,440 - +1.9 4,281,440 - +1.0 4,281,493 + HGI48_RS19070 0.19 -0.6 4,281,493 + HGI48_RS19070 0.19 +0.5 4,281,493 + HGI48_RS19070 0.19 -0.6 4,281,493 + HGI48_RS19070 0.19 -0.7 4,281,494 - HGI48_RS19070 0.19 -1.8 4,281,495 + HGI48_RS19070 0.19 -1.1 4,281,495 + HGI48_RS19070 0.19 +0.9 4,281,495 + HGI48_RS19070 0.19 -0.3 4,281,623 + HGI48_RS19070 0.52 -0.1 4,281,636 + HGI48_RS19070 0.55 -0.9 4,281,637 - HGI48_RS19070 0.55 +1.6 4,281,637 - HGI48_RS19070 0.55 +0.0 4,281,705 + HGI48_RS19070 0.72 -0.5 4,281,705 + HGI48_RS19070 0.72 +0.0 4,281,705 + HGI48_RS19070 0.72 +0.6 4,281,834 - +0.7 4,281,834 - -0.1 4,281,978 + HGI48_RS19075 0.42 -1.0 4,281,978 + +0.2 4,281,978 + HGI48_RS19075 0.42 -0.2 4,281,979 - HGI48_RS19075 0.42 -1.1 4,282,128 + HGI48_RS19075 0.84 -0.1 4,282,128 + HGI48_RS19075 0.84 +0.3 4,282,129 - HGI48_RS19075 0.84 +0.6 4,282,129 - HGI48_RS19075 0.84 +0.5 4,282,174 + +0.9 4,282,174 + -2.0 4,282,174 + -1.3 4,282,175 - -2.1 4,282,175 - +0.7 4,282,175 - +0.1 4,282,182 + +0.3 4,282,182 + -2.1 4,282,182 + -3.0 4,282,182 + -1.3 4,282,182 + +0.0 4,282,183 - -1.6 4,282,183 - -1.3 4,282,230 + +0.7 4,282,231 - -1.0 4,282,273 + -2.6 4,282,274 - +0.3 4,282,274 - +0.7 4,282,274 - -0.0 4,282,274 - -0.1 4,282,274 - -0.1 4,282,283 + +0.3 4,282,290 + -0.4 4,282,325 - -1.1 4,282,342 - -0.6 4,282,358 + -0.1 4,282,423 + -0.3 4,282,442 + -2.1 4,282,457 + -1.8 4,282,457 + +0.2 4,282,458 - +1.2 4,282,518 + -0.8 4,282,525 - +1.2 4,282,600 + HGI48_RS19080 0.18 -1.1 4,282,601 - HGI48_RS19080 0.19 -2.1 4,282,601 - HGI48_RS19080 0.19 -0.7 4,282,601 - HGI48_RS19080 0.19 +0.1 4,282,602 + HGI48_RS19080 0.19 -0.2 4,282,635 - HGI48_RS19080 0.28 -1.3 4,282,649 - HGI48_RS19080 0.32 -0.6 4,282,649 - HGI48_RS19080 0.32 +0.4 4,282,649 - HGI48_RS19080 0.32 +0.3 4,282,667 + HGI48_RS19080 0.37 -0.2 4,282,667 + HGI48_RS19080 0.37 -1.0 4,282,744 - HGI48_RS19080 0.59 -0.8 4,282,757 + HGI48_RS19080 0.63 -1.3 4,282,757 + HGI48_RS19080 0.63 +1.3 4,282,793 - HGI48_RS19080 0.73 -1.8 4,282,793 - HGI48_RS19080 0.73 +0.3 4,282,806 + HGI48_RS19080 0.77 -1.3 4,282,806 + HGI48_RS19080 0.77 -0.8 4,282,821 + HGI48_RS19080 0.81 +0.3 4,282,837 + HGI48_RS19080 0.85 -1.6 4,282,838 - HGI48_RS19080 0.86 +0.4 4,282,838 - HGI48_RS19080 0.86 -0.5 4,282,841 + HGI48_RS19080 0.86 +0.5 4,282,841 + HGI48_RS19080 0.86 -1.8 4,282,841 + HGI48_RS19080 0.86 -0.7 4,282,841 + HGI48_RS19080 0.86 +1.0 4,282,841 + HGI48_RS19080 0.86 -1.3 4,282,842 - HGI48_RS19080 0.87 -0.3 4,282,842 - HGI48_RS19080 0.87 -1.3 4,282,842 - HGI48_RS19080 0.87 -0.6 4,282,842 - HGI48_RS19080 0.87 +2.1 4,282,874 - +0.3 4,282,877 + +0.0 4,282,877 + +1.4 4,282,877 + -1.8 4,282,888 + +2.1 4,282,889 - +0.3 4,282,889 - +0.0 4,282,917 + +0.0 4,282,918 - +1.1 4,282,918 - -1.3 4,282,920 + +1.2 4,282,920 + +1.4 4,282,921 - -0.2 4,282,921 - -2.1 4,282,921 - -0.1 4,282,921 - +0.3 4,282,921 - +1.1 4,282,921 - -2.1 4,282,921 - -2.6 4,282,939 + -0.3 4,282,939 + +0.5 4,282,939 + +0.1 4,282,940 - +0.2 4,282,940 - -1.3 4,283,102 - -0.8
Or see this region's nucleotide sequence