Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS18795 and HGI48_RS18800 are separated by 125 nucleotides HGI48_RS18800 and HGI48_RS18805 are separated by 358 nucleotides HGI48_RS18805 and HGI48_RS18810 are separated by 17 nucleotides
HGI48_RS18795: HGI48_RS18795 - flavodoxin, at 4,217,279 to 4,217,809
_RS18795
HGI48_RS18800: HGI48_RS18800 - transposase, at 4,217,935 to 4,218,126
_RS18800
HGI48_RS18805: HGI48_RS18805 - hypothetical protein, at 4,218,485 to 4,219,288
_RS18805
HGI48_RS18810: HGI48_RS18810 - radical SAM protein, at 4,219,306 to 4,220,634
_RS18810
Position (kb)
4218
4219
4220 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4217.625 kb on + strand, within HGI48_RS18795 at 4217.625 kb on + strand, within HGI48_RS18795 at 4217.626 kb on - strand, within HGI48_RS18795 at 4217.626 kb on - strand, within HGI48_RS18795 at 4217.626 kb on - strand, within HGI48_RS18795 at 4217.626 kb on - strand, within HGI48_RS18795 at 4217.637 kb on + strand, within HGI48_RS18795 at 4217.808 kb on - strand at 4217.808 kb on - strand at 4217.833 kb on - strand at 4217.965 kb on + strand, within HGI48_RS18800 at 4217.977 kb on + strand, within HGI48_RS18800 at 4218.009 kb on - strand, within HGI48_RS18800 at 4218.011 kb on + strand, within HGI48_RS18800 at 4218.011 kb on + strand, within HGI48_RS18800 at 4218.012 kb on - strand, within HGI48_RS18800 at 4218.018 kb on + strand, within HGI48_RS18800 at 4218.068 kb on + strand, within HGI48_RS18800 at 4218.079 kb on + strand at 4218.102 kb on + strand, within HGI48_RS18800 at 4218.102 kb on + strand, within HGI48_RS18800 at 4218.118 kb on - strand at 4218.130 kb on + strand at 4218.131 kb on - strand at 4218.176 kb on - strand at 4218.176 kb on - strand at 4218.285 kb on - strand at 4218.317 kb on + strand at 4218.335 kb on + strand at 4218.363 kb on + strand at 4218.364 kb on - strand at 4218.425 kb on + strand at 4218.577 kb on - strand, within HGI48_RS18805 at 4218.608 kb on - strand, within HGI48_RS18805 at 4218.648 kb on + strand, within HGI48_RS18805 at 4218.649 kb on - strand, within HGI48_RS18805 at 4218.718 kb on + strand, within HGI48_RS18805 at 4218.878 kb on + strand, within HGI48_RS18805 at 4219.002 kb on + strand, within HGI48_RS18805 at 4219.002 kb on + strand, within HGI48_RS18805 at 4219.003 kb on - strand at 4219.003 kb on - strand at 4219.092 kb on + strand, within HGI48_RS18805 at 4219.154 kb on - strand at 4219.183 kb on + strand, within HGI48_RS18805 at 4219.189 kb on - strand, within HGI48_RS18805 at 4219.328 kb on + strand at 4219.372 kb on - strand at 4219.595 kb on + strand, within HGI48_RS18810 at 4219.680 kb on + strand at 4219.714 kb on - strand at 4219.785 kb on - strand, within HGI48_RS18810 at 4219.843 kb on + strand, within HGI48_RS18810 at 4219.846 kb on - strand, within HGI48_RS18810 at 4220.001 kb on + strand, within HGI48_RS18810 at 4220.001 kb on + strand at 4220.002 kb on - strand, within HGI48_RS18810 at 4220.076 kb on + strand, within HGI48_RS18810 at 4220.085 kb on - strand, within HGI48_RS18810 at 4220.102 kb on + strand, within HGI48_RS18810 at 4220.102 kb on + strand, within HGI48_RS18810 at 4220.130 kb on - strand, within HGI48_RS18810 at 4220.163 kb on + strand, within HGI48_RS18810
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 4,217,625 + HGI48_RS18795 0.65 -0.0 4,217,625 + HGI48_RS18795 0.65 -1.4 4,217,626 - HGI48_RS18795 0.65 -2.8 4,217,626 - HGI48_RS18795 0.65 +0.0 4,217,626 - HGI48_RS18795 0.65 +0.3 4,217,626 - HGI48_RS18795 0.65 -2.0 4,217,637 + HGI48_RS18795 0.67 +0.7 4,217,808 - -1.3 4,217,808 - +0.7 4,217,833 - +0.4 4,217,965 + HGI48_RS18800 0.16 +0.6 4,217,977 + HGI48_RS18800 0.22 -0.3 4,218,009 - HGI48_RS18800 0.39 +1.1 4,218,011 + HGI48_RS18800 0.40 -0.3 4,218,011 + HGI48_RS18800 0.40 +0.2 4,218,012 - HGI48_RS18800 0.40 -0.3 4,218,018 + HGI48_RS18800 0.43 -1.6 4,218,068 + HGI48_RS18800 0.69 +0.2 4,218,079 + +2.5 4,218,102 + HGI48_RS18800 0.87 -0.3 4,218,102 + HGI48_RS18800 0.87 -0.5 4,218,118 - +0.2 4,218,130 + -1.3 4,218,131 - +0.3 4,218,176 - -0.5 4,218,176 - +0.4 4,218,285 - -0.1 4,218,317 + -1.1 4,218,335 + +1.4 4,218,363 + -0.8 4,218,364 - -0.7 4,218,425 + +0.3 4,218,577 - HGI48_RS18805 0.11 -0.1 4,218,608 - HGI48_RS18805 0.15 -0.9 4,218,648 + HGI48_RS18805 0.20 +0.7 4,218,649 - HGI48_RS18805 0.20 -1.5 4,218,718 + HGI48_RS18805 0.29 -1.8 4,218,878 + HGI48_RS18805 0.49 -1.8 4,219,002 + HGI48_RS18805 0.64 -1.6 4,219,002 + HGI48_RS18805 0.64 -0.1 4,219,003 - -0.8 4,219,003 - +0.7 4,219,092 + HGI48_RS18805 0.75 -0.0 4,219,154 - -0.8 4,219,183 + HGI48_RS18805 0.87 -1.0 4,219,189 - HGI48_RS18805 0.88 -1.3 4,219,328 + +2.2 4,219,372 - -0.4 4,219,595 + HGI48_RS18810 0.22 -0.3 4,219,680 + -0.3 4,219,714 - +2.5 4,219,785 - HGI48_RS18810 0.36 -1.4 4,219,843 + HGI48_RS18810 0.40 -0.3 4,219,846 - HGI48_RS18810 0.41 +0.3 4,220,001 + HGI48_RS18810 0.52 -0.3 4,220,001 + -0.8 4,220,002 - HGI48_RS18810 0.52 +1.0 4,220,076 + HGI48_RS18810 0.58 -1.3 4,220,085 - HGI48_RS18810 0.59 +0.6 4,220,102 + HGI48_RS18810 0.60 -0.1 4,220,102 + HGI48_RS18810 0.60 +1.0 4,220,130 - HGI48_RS18810 0.62 -1.5 4,220,163 + HGI48_RS18810 0.64 -1.9
Or see this region's nucleotide sequence