Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS18805

Experiment: PDB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS18795 and HGI48_RS18800 are separated by 125 nucleotidesHGI48_RS18800 and HGI48_RS18805 are separated by 358 nucleotidesHGI48_RS18805 and HGI48_RS18810 are separated by 17 nucleotides HGI48_RS18795: HGI48_RS18795 - flavodoxin, at 4,217,279 to 4,217,809 _RS18795 HGI48_RS18800: HGI48_RS18800 - transposase, at 4,217,935 to 4,218,126 _RS18800 HGI48_RS18805: HGI48_RS18805 - hypothetical protein, at 4,218,485 to 4,219,288 _RS18805 HGI48_RS18810: HGI48_RS18810 - radical SAM protein, at 4,219,306 to 4,220,634 _RS18810 Position (kb) 4218 4219 4220Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4217.625 kb on + strand, within HGI48_RS18795at 4217.625 kb on + strand, within HGI48_RS18795at 4217.626 kb on - strand, within HGI48_RS18795at 4217.626 kb on - strand, within HGI48_RS18795at 4217.626 kb on - strand, within HGI48_RS18795at 4217.626 kb on - strand, within HGI48_RS18795at 4217.637 kb on + strand, within HGI48_RS18795at 4217.808 kb on - strandat 4217.808 kb on - strandat 4217.833 kb on - strandat 4217.965 kb on + strand, within HGI48_RS18800at 4217.977 kb on + strand, within HGI48_RS18800at 4218.009 kb on - strand, within HGI48_RS18800at 4218.011 kb on + strand, within HGI48_RS18800at 4218.011 kb on + strand, within HGI48_RS18800at 4218.012 kb on - strand, within HGI48_RS18800at 4218.018 kb on + strand, within HGI48_RS18800at 4218.068 kb on + strand, within HGI48_RS18800at 4218.079 kb on + strandat 4218.102 kb on + strand, within HGI48_RS18800at 4218.102 kb on + strand, within HGI48_RS18800at 4218.118 kb on - strandat 4218.130 kb on + strandat 4218.131 kb on - strandat 4218.176 kb on - strandat 4218.176 kb on - strandat 4218.285 kb on - strandat 4218.317 kb on + strandat 4218.335 kb on + strandat 4218.363 kb on + strandat 4218.364 kb on - strandat 4218.425 kb on + strandat 4218.577 kb on - strand, within HGI48_RS18805at 4218.608 kb on - strand, within HGI48_RS18805at 4218.648 kb on + strand, within HGI48_RS18805at 4218.649 kb on - strand, within HGI48_RS18805at 4218.718 kb on + strand, within HGI48_RS18805at 4218.878 kb on + strand, within HGI48_RS18805at 4219.002 kb on + strand, within HGI48_RS18805at 4219.002 kb on + strand, within HGI48_RS18805at 4219.003 kb on - strandat 4219.003 kb on - strandat 4219.092 kb on + strand, within HGI48_RS18805at 4219.154 kb on - strandat 4219.183 kb on + strand, within HGI48_RS18805at 4219.189 kb on - strand, within HGI48_RS18805at 4219.328 kb on + strandat 4219.372 kb on - strandat 4219.595 kb on + strand, within HGI48_RS18810at 4219.680 kb on + strandat 4219.714 kb on - strandat 4219.785 kb on - strand, within HGI48_RS18810at 4219.843 kb on + strand, within HGI48_RS18810at 4219.846 kb on - strand, within HGI48_RS18810at 4220.001 kb on + strand, within HGI48_RS18810at 4220.001 kb on + strandat 4220.002 kb on - strand, within HGI48_RS18810at 4220.076 kb on + strand, within HGI48_RS18810at 4220.085 kb on - strand, within HGI48_RS18810at 4220.102 kb on + strand, within HGI48_RS18810at 4220.102 kb on + strand, within HGI48_RS18810at 4220.130 kb on - strand, within HGI48_RS18810at 4220.163 kb on + strand, within HGI48_RS18810

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Per-strain Table

Position Strand Gene LocusTag Fraction PDB
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4,217,625 + HGI48_RS18795 0.65 -0.0
4,217,625 + HGI48_RS18795 0.65 -1.4
4,217,626 - HGI48_RS18795 0.65 -2.8
4,217,626 - HGI48_RS18795 0.65 +0.0
4,217,626 - HGI48_RS18795 0.65 +0.3
4,217,626 - HGI48_RS18795 0.65 -2.0
4,217,637 + HGI48_RS18795 0.67 +0.7
4,217,808 - -1.3
4,217,808 - +0.7
4,217,833 - +0.4
4,217,965 + HGI48_RS18800 0.16 +0.6
4,217,977 + HGI48_RS18800 0.22 -0.3
4,218,009 - HGI48_RS18800 0.39 +1.1
4,218,011 + HGI48_RS18800 0.40 -0.3
4,218,011 + HGI48_RS18800 0.40 +0.2
4,218,012 - HGI48_RS18800 0.40 -0.3
4,218,018 + HGI48_RS18800 0.43 -1.6
4,218,068 + HGI48_RS18800 0.69 +0.2
4,218,079 + +2.5
4,218,102 + HGI48_RS18800 0.87 -0.3
4,218,102 + HGI48_RS18800 0.87 -0.5
4,218,118 - +0.2
4,218,130 + -1.3
4,218,131 - +0.3
4,218,176 - -0.5
4,218,176 - +0.4
4,218,285 - -0.1
4,218,317 + -1.1
4,218,335 + +1.4
4,218,363 + -0.8
4,218,364 - -0.7
4,218,425 + +0.3
4,218,577 - HGI48_RS18805 0.11 -0.1
4,218,608 - HGI48_RS18805 0.15 -0.9
4,218,648 + HGI48_RS18805 0.20 +0.7
4,218,649 - HGI48_RS18805 0.20 -1.5
4,218,718 + HGI48_RS18805 0.29 -1.8
4,218,878 + HGI48_RS18805 0.49 -1.8
4,219,002 + HGI48_RS18805 0.64 -1.6
4,219,002 + HGI48_RS18805 0.64 -0.1
4,219,003 - -0.8
4,219,003 - +0.7
4,219,092 + HGI48_RS18805 0.75 -0.0
4,219,154 - -0.8
4,219,183 + HGI48_RS18805 0.87 -1.0
4,219,189 - HGI48_RS18805 0.88 -1.3
4,219,328 + +2.2
4,219,372 - -0.4
4,219,595 + HGI48_RS18810 0.22 -0.3
4,219,680 + -0.3
4,219,714 - +2.5
4,219,785 - HGI48_RS18810 0.36 -1.4
4,219,843 + HGI48_RS18810 0.40 -0.3
4,219,846 - HGI48_RS18810 0.41 +0.3
4,220,001 + HGI48_RS18810 0.52 -0.3
4,220,001 + -0.8
4,220,002 - HGI48_RS18810 0.52 +1.0
4,220,076 + HGI48_RS18810 0.58 -1.3
4,220,085 - HGI48_RS18810 0.59 +0.6
4,220,102 + HGI48_RS18810 0.60 -0.1
4,220,102 + HGI48_RS18810 0.60 +1.0
4,220,130 - HGI48_RS18810 0.62 -1.5
4,220,163 + HGI48_RS18810 0.64 -1.9

Or see this region's nucleotide sequence