Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS18110

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,063,655	+		HGI48_RS18105	0.43	-1.6
4,063,655	+				+1.7
4,063,655	+		HGI48_RS18105	0.43	+0.9
4,063,655	+		HGI48_RS18105	0.43	-0.1
4,063,656	-		HGI48_RS18105	0.43	-2.6
4,063,656	-		HGI48_RS18105	0.43	-0.2
4,063,656	-		HGI48_RS18105	0.43	-1.2
4,063,677	-		HGI48_RS18105	0.44	-0.8
4,063,677	-		HGI48_RS18105	0.44	-1.0
4,063,864	-		HGI48_RS18105	0.56	-0.2
4,063,864	-		HGI48_RS18105	0.56	-0.9
4,064,080	+		HGI48_RS18105	0.69	-0.2
4,064,081	-		HGI48_RS18105	0.69	+0.2
4,064,249	+				-0.3
4,064,249	+		HGI48_RS18105	0.80	-0.2
4,064,249	+				+1.3
4,064,249	+		HGI48_RS18105	0.80	+0.3
4,064,249	+		HGI48_RS18105	0.80	-1.8
4,064,249	+		HGI48_RS18105	0.80	+0.0
4,064,249	+		HGI48_RS18105	0.80	-0.2
4,064,249	+		HGI48_RS18105	0.80	-2.3
4,064,249	+		HGI48_RS18105	0.80	-2.9
4,064,249	+		HGI48_RS18105	0.80	-0.3
4,064,249	+		HGI48_RS18105	0.80	-0.3
4,064,249	+		HGI48_RS18105	0.80	-1.3
4,064,249	+		HGI48_RS18105	0.80	-0.3
4,064,249	+		HGI48_RS18105	0.80	-0.5
4,064,250	-		HGI48_RS18105	0.80	-1.1
4,064,250	-				-0.9
4,064,250	-		HGI48_RS18105	0.80	-0.1
4,064,250	-		HGI48_RS18105	0.80	+1.0
4,064,250	-		HGI48_RS18105	0.80	-1.1
4,064,250	-		HGI48_RS18105	0.80	-0.5
4,064,250	-				+1.4
4,064,250	-		HGI48_RS18105	0.80	+1.2
4,064,250	-		HGI48_RS18105	0.80	+1.2
4,064,250	-		HGI48_RS18105	0.80	-0.5
4,064,250	-		HGI48_RS18105	0.80	-0.7
4,064,250	-		HGI48_RS18105	0.80	+0.2
4,064,250	-		HGI48_RS18105	0.80	-0.3
4,064,250	-		HGI48_RS18105	0.80	+1.0
4,064,250	-		HGI48_RS18105	0.80	+0.4
4,064,250	-				-0.3
4,064,250	-		HGI48_RS18105	0.80	+1.2
4,064,269	+		HGI48_RS18105	0.81	-0.3
4,064,269	+		HGI48_RS18105	0.81	+0.3
4,064,269	+		HGI48_RS18105	0.81	+1.3
4,064,269	+		HGI48_RS18105	0.81	+0.5
4,064,269	+		HGI48_RS18105	0.81	-1.3
4,064,270	-				+3.0
4,064,270	-		HGI48_RS18105	0.81	+0.4
4,064,270	-		HGI48_RS18105	0.81	-2.3
4,064,270	-		HGI48_RS18105	0.81	+0.2
4,064,270	-		HGI48_RS18105	0.81	+0.7
4,064,270	-				+0.7
4,064,270	-		HGI48_RS18105	0.81	+1.1
4,064,270	-		HGI48_RS18105	0.81	-0.1
4,064,270	-		HGI48_RS18105	0.81	-0.8
4,064,444	+				+0.1
4,064,444	+				-1.3
4,064,445	-				-0.9
4,064,445	-				-2.1
4,064,450	+				-0.1
4,064,451	-				-3.1
4,064,451	-				-0.4
4,064,521	+				-0.1
4,064,547	+				-0.4
4,064,548	-				-1.6
4,064,548	-				-0.3
4,064,548	-				+0.0
4,064,573	+				+1.9
4,064,573	+				-0.3
4,064,574	-				+1.3
4,064,583	+				-2.3
4,064,583	+				-0.9
4,064,583	+				-0.9
4,064,583	+				-0.9
4,064,583	+				-0.9
4,064,584	-				+2.3
4,064,584	-				+1.7
4,064,584	-				+0.5
4,064,584	-				+0.2
4,064,584	-				-0.0
4,064,589	+				+0.1
4,064,832	-		HGI48_RS18110	0.39	-1.3
4,064,884	+		HGI48_RS18110	0.47	+1.2
4,065,106	+		HGI48_RS18110	0.79	-0.9
4,065,107	-		HGI48_RS18110	0.79	-1.6
4,065,107	-		HGI48_RS18110	0.79	-2.9
4,065,183	+				+0.7
4,065,183	+				+0.3
4,065,183	+				+0.4
4,065,184	-				-1.3
4,065,184	-				+2.0
4,065,184	-				-0.6
4,065,381	+				-0.1
4,065,381	+				+0.1
4,065,382	-				-0.6
4,065,382	-				-0.3
4,065,382	-				-1.1
4,065,411	+				-0.3
4,065,412	-				-0.5
4,065,412	-				+0.4
4,065,412	-				-0.1
4,065,412	-				+0.7
4,065,413	+				+1.0
4,065,413	+				+0.8
4,065,413	+				+0.4
4,065,413	+				-1.3
4,065,413	+				-0.9
4,065,414	-				-2.9
4,065,414	-				+0.4
4,065,414	-				+0.7
4,065,414	-				-1.4
4,065,414	-				-1.5
4,065,414	-				-1.1
4,065,441	+		HGI48_RS18115	0.25	-1.4
4,065,441	+				+1.7
4,065,441	+		HGI48_RS18115	0.25	-0.9
4,065,442	-		HGI48_RS18115	0.26	-0.3
4,065,452	+		HGI48_RS18115	0.35	-1.3
4,065,452	+		HGI48_RS18115	0.35	+1.3
4,065,453	-		HGI48_RS18115	0.36	-0.2
4,065,455	+		HGI48_RS18115	0.38	-0.3
4,065,456	-		HGI48_RS18115	0.39	-0.2
4,065,544	+				-0.3
4,065,544	+				-0.9
4,065,544	+				+0.6
4,065,544	+				-1.9
4,065,545	-				-2.0
4,065,545	-				-0.5
4,065,545	-				+0.4
4,065,589	-				+0.7
4,065,632	+				-1.3
4,065,638	+				-2.6
4,065,638	+				-1.2
4,065,638	+				+1.0
4,065,639	-				-0.5
4,065,645	+				+0.3
4,065,647	+				-0.1
4,065,648	-				-2.1
4,065,648	-				+0.1
4,065,648	-				+1.8
4,065,648	-				-0.7
4,065,648	-				+1.7
4,065,689	+				-0.5
4,065,690	-				+0.8
4,065,690	-				+0.4
4,065,735	+				-0.1
4,065,773	-				+0.1
4,065,990	+		HGI48_RS18120	0.21	+0.3
4,065,990	+		HGI48_RS18120	0.21	-0.5
4,065,991	-		HGI48_RS18120	0.21	-0.3
4,065,991	-		HGI48_RS18120	0.21	+0.2
4,065,991	-		HGI48_RS18120	0.21	-0.1
4,066,023	+		HGI48_RS18120	0.23	+1.5
4,066,023	+		HGI48_RS18120	0.23	-0.5
4,066,023	+		HGI48_RS18120	0.23	-0.3
4,066,023	+				+0.7
4,066,023	+				-0.9
4,066,023	+		HGI48_RS18120	0.23	-1.6
4,066,023	+		HGI48_RS18120	0.23	-1.9
4,066,023	+		HGI48_RS18120	0.23	-0.3
4,066,024	-		HGI48_RS18120	0.23	+0.5
4,066,024	-		HGI48_RS18120	0.23	+0.4
4,066,024	-		HGI48_RS18120	0.23	-1.1
4,066,024	-		HGI48_RS18120	0.23	+0.7
4,066,024	-		HGI48_RS18120	0.23	-1.5
4,066,177	+		HGI48_RS18120	0.32	-1.6
4,066,178	-		HGI48_RS18120	0.32	+0.1
4,066,178	-		HGI48_RS18120	0.32	-0.9