Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS17905

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,017,653	-				-0.9
4,017,841	-				-0.9
4,017,856	+				+2.1
4,017,856	+		HGI48_RS17900	0.50	-0.1
4,017,856	+		HGI48_RS17900	0.50	+0.3
4,017,857	-		HGI48_RS17900	0.50	+0.4
4,017,857	-		HGI48_RS17900	0.50	+0.0
4,017,894	+		HGI48_RS17900	0.52	+0.6
4,017,894	+		HGI48_RS17900	0.52	+2.7
4,017,895	-		HGI48_RS17900	0.52	-1.6
4,017,915	+		HGI48_RS17900	0.54	+0.4
4,017,915	+		HGI48_RS17900	0.54	-1.5
4,018,095	-		HGI48_RS17900	0.66	+0.3
4,018,336	+		HGI48_RS17900	0.82	-0.6
4,018,354	+		HGI48_RS17900	0.84	-1.9
4,018,354	+		HGI48_RS17900	0.84	+0.1
4,018,354	+		HGI48_RS17900	0.84	-1.1
4,018,355	-		HGI48_RS17900	0.84	-0.0
4,018,355	-		HGI48_RS17900	0.84	+0.1
4,018,355	-		HGI48_RS17900	0.84	+0.4
4,018,355	-		HGI48_RS17900	0.84	-0.5
4,018,355	-		HGI48_RS17900	0.84	+0.3
4,018,355	-		HGI48_RS17900	0.84	+0.4
4,018,624	+				-1.3
4,018,624	+				+0.9
4,018,624	+				+0.9
4,018,624	+				-0.6
4,018,624	+				+0.8
4,018,625	-				-0.1
4,018,699	+				+1.1
4,018,700	-				-0.0
4,018,700	-				+0.2
4,018,753	+		HGI48_RS17905	0.12	-0.5
4,018,753	+		HGI48_RS17905	0.12	+0.7
4,018,753	+		HGI48_RS17905	0.12	-2.3
4,018,753	+				+1.1
4,018,753	+		HGI48_RS17905	0.12	+0.7
4,018,754	-		HGI48_RS17905	0.12	+0.7
4,018,754	-		HGI48_RS17905	0.12	-0.3
4,018,937	+		HGI48_RS17905	0.27	-0.4
4,018,946	+		HGI48_RS17905	0.28	-2.1
4,018,946	+				+1.1
4,018,946	+		HGI48_RS17905	0.28	-0.9
4,018,946	+		HGI48_RS17905	0.28	-0.8
4,018,946	+		HGI48_RS17905	0.28	+1.5
4,018,946	+		HGI48_RS17905	0.28	-2.1
4,018,946	+				+0.7
4,018,946	+		HGI48_RS17905	0.28	-0.2
4,018,946	+		HGI48_RS17905	0.28	-1.1
4,018,946	+		HGI48_RS17905	0.28	-1.1
4,018,946	+		HGI48_RS17905	0.28	-0.3
4,018,947	-		HGI48_RS17905	0.28	+0.1
4,018,947	-		HGI48_RS17905	0.28	-0.1
4,018,947	-		HGI48_RS17905	0.28	-1.1
4,018,947	-		HGI48_RS17905	0.28	-0.1
4,019,050	+		HGI48_RS17905	0.37	+1.0
4,019,051	-		HGI48_RS17905	0.37	+0.9
4,019,141	+		HGI48_RS17905	0.44	-0.8
4,019,141	+		HGI48_RS17905	0.44	+0.3
4,019,159	+		HGI48_RS17905	0.46	-0.0
4,019,160	-		HGI48_RS17905	0.46	+1.4
4,019,182	+		HGI48_RS17905	0.48	-1.0
4,019,182	+		HGI48_RS17905	0.48	+1.0
4,019,182	+		HGI48_RS17905	0.48	-1.0
4,019,182	+		HGI48_RS17905	0.48	-3.2
4,019,182	+		HGI48_RS17905	0.48	-0.5
4,019,182	+		HGI48_RS17905	0.48	-1.3
4,019,183	-		HGI48_RS17905	0.48	+0.4
4,019,234	+		HGI48_RS17905	0.52	+0.1
4,019,235	-				+0.1
4,019,235	-		HGI48_RS17905	0.52	+1.0
4,019,259	+		HGI48_RS17905	0.54	-1.3
4,019,259	+		HGI48_RS17905	0.54	+0.1
4,019,259	+		HGI48_RS17905	0.54	+0.2
4,019,260	-		HGI48_RS17905	0.54	+0.2
4,019,260	-		HGI48_RS17905	0.54	+0.8
4,019,309	+		HGI48_RS17905	0.58	+0.4
4,019,310	-		HGI48_RS17905	0.58	-1.1
4,019,351	+		HGI48_RS17905	0.62	-1.6
4,019,352	-		HGI48_RS17905	0.62	+0.1
4,019,385	-		HGI48_RS17905	0.65	-0.9
4,019,415	+		HGI48_RS17905	0.67	-0.3
4,019,416	-		HGI48_RS17905	0.67	-0.1
4,019,557	-		HGI48_RS17905	0.79	-1.5
4,019,557	-		HGI48_RS17905	0.79	+0.1
4,019,557	-		HGI48_RS17905	0.79	-1.3
4,019,557	-		HGI48_RS17905	0.79	-1.0
4,019,557	-		HGI48_RS17905	0.79	-1.9
4,019,557	-		HGI48_RS17905	0.79	+0.7
4,019,639	+		HGI48_RS17905	0.86	+1.7
4,019,639	+				+0.7
4,019,639	+		HGI48_RS17905	0.86	+0.5
4,019,640	-		HGI48_RS17905	0.86	+1.2
4,019,640	-		HGI48_RS17905	0.86	-0.3
4,019,662	+		HGI48_RS17905	0.88	-0.1
4,019,767	+				-1.9
4,019,767	+				-0.1
4,019,767	+				-0.5
4,019,767	+				-1.6
4,019,768	-				+0.2
4,019,768	-				-0.9
4,019,768	-				+0.6
4,019,825	+				-0.2
4,019,825	+				+1.3
4,019,825	+				+0.7
4,019,825	+				+1.7
4,019,825	+				+0.8
4,019,825	+				-1.3
4,019,825	+				-1.9
4,019,826	-				-0.5
4,019,826	-				-0.1
4,019,826	-				-0.2
4,019,826	-				+0.9
4,019,834	+				+0.1
4,019,834	+				+0.4
4,019,834	+				+0.4
4,019,834	+				-0.2
4,019,834	+				-2.5
4,019,834	+				+0.1
4,019,834	+				+1.3
4,019,834	+				+0.7
4,019,834	+				-0.6
4,019,834	+				-0.9
4,019,835	-				-0.1
4,019,835	-				+0.3
4,019,835	-				+0.3
4,019,835	-				-2.3
4,019,840	-				-0.0
4,019,843	+				-2.0
4,019,843	+				-0.3
4,019,844	-				-2.1
4,019,852	+				-0.9
4,019,852	+				+0.9
4,019,852	+				+0.1
4,019,852	+				-0.2
4,019,853	-				-0.6
4,019,893	+				+0.2
4,019,893	+				-0.2
4,019,902	+				+0.4
4,019,903	-				-0.3
4,019,904	+				+0.9
4,019,904	+				+0.7
4,019,904	+				+1.9
4,019,904	+				+0.4
4,019,904	+				+1.9
4,019,904	+				+0.1
4,019,905	-				+0.7
4,019,905	-				-2.1
4,019,905	-				-0.6
4,019,905	-				+1.2
4,019,967	+				+0.3
4,019,967	+				-0.1
4,020,005	+				-1.6
4,020,005	+				-1.6
4,020,005	+				+0.5
4,020,005	+				+0.3
4,020,005	+				-0.9
4,020,005	+				+2.8
4,020,005	+				-0.8
4,020,005	+				-2.3
4,020,005	+				-2.1
4,020,005	+				+0.3
4,020,005	+				-0.2
4,020,005	+				-0.8
4,020,005	+				+0.1
4,020,005	+				-0.9
4,020,005	+				-2.1
4,020,006	-				-1.6
4,020,006	-				-2.3
4,020,006	-				+0.3
4,020,006	-				+0.4
4,020,006	-				-1.2
4,020,006	-				-0.1
4,020,006	-				+0.4
4,020,006	-				-1.9
4,020,006	-				-1.6
4,020,006	-				-0.3
4,020,006	-				+0.1
4,020,006	-				-0.6
4,020,006	-				-2.1
4,020,006	-				-0.2
4,020,048	+		HGI48_RS17910	0.13	-2.6
4,020,048	+		HGI48_RS17910	0.13	+1.5
4,020,048	+		HGI48_RS17910	0.13	+0.3
4,020,049	-		HGI48_RS17910	0.13	-0.9
4,020,049	-		HGI48_RS17910	0.13	-0.1
4,020,049	-		HGI48_RS17910	0.13	-0.2
4,020,049	-		HGI48_RS17910	0.13	-1.9
4,020,080	-		HGI48_RS17910	0.16	+0.3
4,020,080	-		HGI48_RS17910	0.16	-0.8
4,020,087	+		HGI48_RS17910	0.16	-0.2
4,020,088	-		HGI48_RS17910	0.16	-0.2
4,020,158	+				-0.9
4,020,196	-		HGI48_RS17910	0.27	-1.5
4,020,291	+		HGI48_RS17910	0.36	-0.4
4,020,451	+		HGI48_RS17910	0.51	-2.1
4,020,452	-		HGI48_RS17910	0.51	-1.8
4,020,452	-		HGI48_RS17910	0.51	+0.3
4,020,505	-		HGI48_RS17910	0.56	+0.7
4,020,557	+		HGI48_RS17910	0.61	-0.2
4,020,582	+		HGI48_RS17910	0.64	-1.6
4,020,583	-		HGI48_RS17910	0.64	-1.3
4,020,655	+		HGI48_RS17910	0.71	+0.2
4,020,655	+		HGI48_RS17910	0.71	-0.1
4,020,670	+		HGI48_RS17910	0.72	-0.5
4,020,670	+		HGI48_RS17910	0.72	+0.7
4,020,670	+		HGI48_RS17910	0.72	+0.5
4,020,670	+		HGI48_RS17910	0.72	+0.5
4,020,687	+		HGI48_RS17910	0.74	+0.4
4,020,688	-				-0.3
4,020,722	+		HGI48_RS17910	0.77	+0.8
4,020,722	+		HGI48_RS17910	0.77	+0.3
4,020,733	+		HGI48_RS17910	0.78	-1.3
4,020,733	+		HGI48_RS17910	0.78	+0.5