Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS17210

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,854,248	-				-2.7
3,854,248	-				-0.4
3,854,248	-				+0.1
3,854,248	-				-0.5
3,854,397	-		HGI48_RS17205	0.20	-1.9
3,854,403	-		HGI48_RS17205	0.22	-1.0
3,854,448	-		HGI48_RS17205	0.35	+1.0
3,854,490	+		HGI48_RS17205	0.47	+0.4
3,854,491	-		HGI48_RS17205	0.47	+0.5
3,854,507	+		HGI48_RS17205	0.52	-1.7
3,854,567	+		HGI48_RS17205	0.69	+0.4
3,854,567	+		HGI48_RS17205	0.69	-1.4
3,854,567	+		HGI48_RS17205	0.69	-0.7
3,854,569	+		HGI48_RS17205	0.70	+0.9
3,854,570	-		HGI48_RS17205	0.70	-0.5
3,854,570	-		HGI48_RS17205	0.70	-0.5
3,854,570	-		HGI48_RS17205	0.70	+0.3
3,854,570	-		HGI48_RS17205	0.70	-0.8
3,854,570	-				-1.0
3,854,577	-		HGI48_RS17205	0.72	+0.6
3,854,665	-				+1.2
3,854,665	-				-1.3
3,854,665	-				-0.4
3,854,678	-				-1.4
3,854,692	+				-1.4
3,854,692	+				+0.8
3,854,692	+				-1.4
3,854,737	+				-1.4
3,854,737	+				-0.7
3,854,740	-				+1.3
3,854,740	-				-0.1
3,854,763	+				-0.1
3,854,763	+				+0.9
3,854,763	+				+0.2
3,854,763	+				+1.2
3,854,763	+				-0.6
3,854,764	-				-0.4
3,854,764	-				-3.2
3,854,764	-				+0.0
3,854,764	-				+1.0
3,854,803	+				-1.7
3,854,803	+				+0.6
3,854,803	+				+0.1
3,854,803	+				+0.6
3,854,803	+				+0.6
3,854,803	+				-1.0
3,854,804	-				-1.2
3,854,804	-				-1.7
3,854,804	-				-2.4
3,854,804	-				-1.2
3,854,804	-				+1.0
3,854,804	-				+1.0
3,854,804	-				+0.3
3,854,804	-				-0.7
3,854,804	-				+0.4
3,854,804	-				+0.9
3,854,804	-				-0.1
3,854,804	-				-0.6
3,854,830	+				+0.9
3,854,830	+				-2.2
3,854,883	+				-0.6
3,854,883	+				-0.4
3,854,884	-				-2.0
3,854,915	+				+0.6
3,854,978	+				-0.1
3,854,978	+				-1.7
3,854,978	+				-1.0
3,854,978	+				-2.0
3,854,979	-				-0.4
3,855,019	+				-1.9
3,855,020	-				-0.5
3,855,020	-				+1.6
3,855,223	+				-0.4
3,855,223	+		HGI48_RS17210	0.14	-0.1
3,855,224	-		HGI48_RS17210	0.15	-1.7
3,855,297	+		HGI48_RS17210	0.16	-2.0
3,855,297	+		HGI48_RS17210	0.16	-1.4
3,855,298	-		HGI48_RS17210	0.16	-2.0
3,855,298	-		HGI48_RS17210	0.16	-1.7
3,855,298	-				-0.4
3,855,363	+		HGI48_RS17210	0.18	-1.1
3,855,364	-		HGI48_RS17210	0.18	-2.1
3,855,364	-		HGI48_RS17210	0.18	-1.4
3,855,364	-		HGI48_RS17210	0.18	+2.1
3,855,501	-		HGI48_RS17210	0.22	-0.4
3,855,523	-		HGI48_RS17210	0.22	-1.3
3,855,552	-		HGI48_RS17210	0.23	+0.3
3,855,552	-				-1.0
3,855,671	+				+0.6
3,855,671	+		HGI48_RS17210	0.26	-1.3
3,855,753	+		HGI48_RS17210	0.29	-0.4
3,855,753	+		HGI48_RS17210	0.29	-1.4
3,855,754	-		HGI48_RS17210	0.29	-1.0
3,855,754	-				+0.6
3,855,754	-				-1.0
3,855,754	-		HGI48_RS17210	0.29	-2.0
3,855,754	-		HGI48_RS17210	0.29	+0.6
3,855,846	+		HGI48_RS17210	0.31	-1.7
3,855,846	+		HGI48_RS17210	0.31	+0.8
3,855,847	-				+0.6
3,855,847	-				+2.2
3,855,847	-		HGI48_RS17210	0.31	-3.0
3,855,924	+		HGI48_RS17210	0.33	+0.0
3,855,948	-		HGI48_RS17210	0.34	+0.2
3,855,975	+		HGI48_RS17210	0.34	-1.0
3,855,975	+		HGI48_RS17210	0.34	-1.0
3,855,976	-		HGI48_RS17210	0.34	-1.0
3,855,976	-				+0.0
3,856,044	+		HGI48_RS17210	0.36	-1.4
3,856,251	-		HGI48_RS17210	0.42	-1.7
3,856,378	+		HGI48_RS17210	0.45	-1.7
3,856,378	+		HGI48_RS17210	0.45	-2.0
3,856,379	-		HGI48_RS17210	0.45	+0.3
3,856,379	-				-0.4
3,856,379	-		HGI48_RS17210	0.45	-1.7
3,856,379	-		HGI48_RS17210	0.45	-0.3
3,856,629	+		HGI48_RS17210	0.52	-0.4
3,856,629	+		HGI48_RS17210	0.52	-0.4
3,856,629	+		HGI48_RS17210	0.52	-1.4
3,856,630	-		HGI48_RS17210	0.52	+0.2
3,856,630	-				+0.6
3,856,630	-		HGI48_RS17210	0.52	-1.4
3,856,630	-		HGI48_RS17210	0.52	-2.6
3,856,630	-		HGI48_RS17210	0.52	-1.4
3,856,630	-		HGI48_RS17210	0.52	-1.0
3,856,630	-		HGI48_RS17210	0.52	+0.1
3,856,630	-				-1.0
3,856,635	+				-0.4
3,856,635	+		HGI48_RS17210	0.52	-1.3
3,856,635	+		HGI48_RS17210	0.52	-1.3
3,856,636	-				-1.0
3,856,636	-		HGI48_RS17210	0.52	-0.4
3,856,636	-		HGI48_RS17210	0.52	-1.4
3,856,636	-				-1.0
3,856,636	-		HGI48_RS17210	0.52	-2.2
3,856,636	-		HGI48_RS17210	0.52	-1.4
3,856,636	-		HGI48_RS17210	0.52	-0.6
3,856,914	-		HGI48_RS17210	0.59	-2.2
3,857,111	+				+0.6
3,857,268	+		HGI48_RS17210	0.69	-0.6
3,857,356	+				+0.0
3,857,356	+		HGI48_RS17210	0.71	+0.6
3,857,356	+				+0.6
3,857,356	+		HGI48_RS17210	0.71	-2.8
3,857,356	+		HGI48_RS17210	0.71	-2.2
3,857,357	-		HGI48_RS17210	0.71	+0.2
3,857,576	+				-0.4
3,857,623	+		HGI48_RS17210	0.78	-2.4
3,857,623	+				-0.4
3,857,624	-		HGI48_RS17210	0.78	-0.6
3,857,624	-				+1.6
3,857,787	-		HGI48_RS17210	0.82	+1.3
3,857,787	-		HGI48_RS17210	0.82	+0.6
3,858,015	-		HGI48_RS17210	0.88	-0.4
3,858,015	-		HGI48_RS17210	0.88	-1.4
3,858,015	-		HGI48_RS17210	0.88	+1.0
3,858,023	+		HGI48_RS17210	0.89	-0.4
3,858,036	+		HGI48_RS17210	0.89	+0.3
3,858,036	+				-0.4
3,858,037	-		HGI48_RS17210	0.89	-1.2
3,858,307	-				-2.0
3,858,449	+				-2.0
3,858,449	+				-1.4
3,858,449	+				-1.0
3,858,449	+				-1.7
3,858,450	-				-1.0
3,858,450	-				+1.4
3,858,470	-				-1.3
3,858,471	+				-2.6
3,858,471	+				-1.0
3,858,471	+				-1.4
3,858,471	+				-0.5
3,858,471	+				-1.0
3,858,471	+				-1.6
3,858,471	+				-1.7
3,858,471	+				-0.7
3,858,471	+				-2.3
3,858,471	+				-0.1
3,858,472	-				+0.8
3,858,472	-				+0.7
3,858,472	-				-1.0
3,858,472	-				-1.1
3,858,620	+		HGI48_RS17215	0.10	-0.4
3,858,620	+		HGI48_RS17215	0.10	-1.0
3,858,621	-		HGI48_RS17215	0.10	+0.9
3,858,657	+		HGI48_RS17215	0.12	-0.1
3,858,657	+		HGI48_RS17215	0.12	-1.4
3,858,657	+		HGI48_RS17215	0.12	+1.0
3,858,657	+		HGI48_RS17215	0.12	-1.7
3,858,658	-		HGI48_RS17215	0.12	-1.7
3,858,658	-				+3.2
3,858,658	-		HGI48_RS17215	0.12	+0.6
3,858,738	+		HGI48_RS17215	0.17	+0.6
3,858,738	+		HGI48_RS17215	0.17	-1.0
3,858,738	+		HGI48_RS17215	0.17	-0.4
3,858,738	+				-1.0
3,858,738	+		HGI48_RS17215	0.17	+0.3
3,858,738	+		HGI48_RS17215	0.17	-1.4
3,858,738	+		HGI48_RS17215	0.17	+0.0
3,858,739	-		HGI48_RS17215	0.17	-1.4
3,858,742	+		HGI48_RS17215	0.17	-1.4
3,858,742	+				-1.0
3,858,742	+		HGI48_RS17215	0.17	-1.7
3,858,742	+		HGI48_RS17215	0.17	+1.1
3,858,743	-		HGI48_RS17215	0.17	-1.1
3,858,743	-		HGI48_RS17215	0.17	-0.4
3,858,744	+				-1.0
3,858,745	-		HGI48_RS17215	0.17	-2.7
3,858,754	+				-0.4
3,858,795	-		HGI48_RS17215	0.20	+0.6
3,859,057	+				+0.6
3,859,058	-		HGI48_RS17215	0.35	-0.4
3,859,079	+				+1.6
3,859,079	+		HGI48_RS17215	0.37	+0.6
3,859,079	+		HGI48_RS17215	0.37	-1.9
3,859,079	+		HGI48_RS17215	0.37	-1.4
3,859,079	+				+0.6
3,859,079	+		HGI48_RS17215	0.37	-0.4
3,859,079	+		HGI48_RS17215	0.37	-0.1
3,859,080	-		HGI48_RS17215	0.37	-1.4
3,859,080	-		HGI48_RS17215	0.37	-1.1
3,859,080	-		HGI48_RS17215	0.37	-1.0
3,859,080	-				+2.4
3,859,197	+		HGI48_RS17215	0.44	-0.6
3,859,197	+				+0.0
3,859,197	+				-1.0
3,859,197	+		HGI48_RS17215	0.44	-0.5
3,859,197	+		HGI48_RS17215	0.44	-0.1
3,859,197	+		HGI48_RS17215	0.44	-0.7
3,859,197	+		HGI48_RS17215	0.44	+0.3
3,859,197	+		HGI48_RS17215	0.44	+1.9
3,859,197	+		HGI48_RS17215	0.44	-0.3
3,859,197	+		HGI48_RS17215	0.44	-0.4
3,859,198	-				+0.6
3,859,198	-		HGI48_RS17215	0.44	-1.1
3,859,198	-		HGI48_RS17215	0.44	-1.1
3,859,198	-		HGI48_RS17215	0.44	+1.2
3,859,198	-		HGI48_RS17215	0.44	+0.8
3,859,198	-				-1.0
3,859,198	-		HGI48_RS17215	0.44	+0.9
3,859,198	-		HGI48_RS17215	0.44	+0.0
3,859,198	-		HGI48_RS17215	0.44	-0.7
3,859,198	-		HGI48_RS17215	0.44	+0.2
3,859,200	+		HGI48_RS17215	0.44	+1.2
3,859,200	+		HGI48_RS17215	0.44	-1.0
3,859,200	+				-1.0
3,859,200	+		HGI48_RS17215	0.44	-0.4
3,859,200	+		HGI48_RS17215	0.44	-0.7
3,859,200	+		HGI48_RS17215	0.44	-0.2
3,859,200	+				-1.0
3,859,200	+		HGI48_RS17215	0.44	-3.0
3,859,201	-		HGI48_RS17215	0.44	+0.3
3,859,201	-				-1.0
3,859,201	-		HGI48_RS17215	0.44	+0.4
3,859,236	+		HGI48_RS17215	0.46	-1.6
3,859,236	+				-1.0
3,859,236	+		HGI48_RS17215	0.46	-2.2
3,859,299	+				+1.6
3,859,427	-		HGI48_RS17215	0.57	-0.7