Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS16225 and HGI48_RS16230 are separated by 135 nucleotides HGI48_RS16230 and HGI48_RS16235 are separated by 19 nucleotides
HGI48_RS16225: HGI48_RS16225 - ATP-dependent chaperone ClpB, at 3,639,041 to 3,641,614
_RS16225
HGI48_RS16230: HGI48_RS16230 - polyphenol oxidase, at 3,641,750 to 3,642,475
_RS16230
HGI48_RS16235: HGI48_RS16235 - 23S rRNA pseudouridine(1911/1915/1917) synthase RluD, at 3,642,495 to 3,643,472
_RS16235
Position (kb)
3641
3642
3643 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 3640.768 kb on + strand, within HGI48_RS16225 at 3640.768 kb on + strand, within HGI48_RS16225 at 3640.768 kb on + strand, within HGI48_RS16225 at 3640.768 kb on + strand at 3640.769 kb on - strand, within HGI48_RS16225 at 3640.769 kb on - strand, within HGI48_RS16225 at 3640.769 kb on - strand, within HGI48_RS16225 at 3640.769 kb on - strand, within HGI48_RS16225 at 3640.769 kb on - strand, within HGI48_RS16225 at 3640.813 kb on + strand, within HGI48_RS16225 at 3640.813 kb on + strand, within HGI48_RS16225 at 3641.020 kb on + strand, within HGI48_RS16225 at 3641.044 kb on + strand, within HGI48_RS16225 at 3641.047 kb on + strand, within HGI48_RS16225 at 3641.047 kb on + strand, within HGI48_RS16225 at 3641.097 kb on + strand, within HGI48_RS16225 at 3641.271 kb on - strand, within HGI48_RS16225 at 3641.285 kb on + strand, within HGI48_RS16225 at 3641.285 kb on + strand, within HGI48_RS16225 at 3641.286 kb on - strand, within HGI48_RS16225 at 3641.338 kb on + strand, within HGI48_RS16225 at 3641.339 kb on - strand, within HGI48_RS16225 at 3641.339 kb on - strand, within HGI48_RS16225 at 3641.339 kb on - strand, within HGI48_RS16225 at 3641.341 kb on + strand, within HGI48_RS16225 at 3641.596 kb on + strand at 3641.596 kb on + strand at 3641.614 kb on + strand at 3641.615 kb on - strand at 3641.624 kb on + strand at 3641.624 kb on + strand at 3641.625 kb on - strand at 3641.626 kb on + strand at 3641.626 kb on + strand at 3641.626 kb on + strand at 3641.626 kb on + strand at 3641.626 kb on + strand at 3641.626 kb on + strand at 3641.626 kb on + strand at 3641.626 kb on + strand at 3641.626 kb on + strand at 3641.626 kb on + strand at 3641.626 kb on + strand at 3641.626 kb on + strand at 3641.627 kb on - strand at 3641.627 kb on - strand at 3641.627 kb on - strand at 3641.627 kb on - strand at 3641.627 kb on - strand at 3641.627 kb on - strand at 3641.627 kb on - strand at 3641.627 kb on - strand at 3641.627 kb on - strand at 3641.630 kb on + strand at 3641.631 kb on - strand at 3641.631 kb on - strand at 3641.631 kb on - strand at 3641.631 kb on - strand at 3641.657 kb on - strand at 3641.657 kb on - strand at 3641.698 kb on + strand at 3641.701 kb on + strand at 3641.701 kb on + strand at 3641.701 kb on + strand at 3641.704 kb on + strand at 3641.704 kb on + strand at 3641.705 kb on - strand at 3641.753 kb on + strand at 3641.776 kb on + strand at 3641.777 kb on - strand at 3641.777 kb on - strand at 3641.777 kb on - strand at 3641.833 kb on + strand, within HGI48_RS16230 at 3641.833 kb on + strand, within HGI48_RS16230 at 3641.834 kb on - strand, within HGI48_RS16230 at 3641.834 kb on - strand, within HGI48_RS16230 at 3641.882 kb on + strand, within HGI48_RS16230 at 3641.883 kb on - strand, within HGI48_RS16230 at 3641.883 kb on - strand, within HGI48_RS16230 at 3641.898 kb on + strand, within HGI48_RS16230 at 3641.899 kb on - strand, within HGI48_RS16230 at 3641.899 kb on - strand, within HGI48_RS16230 at 3641.902 kb on + strand, within HGI48_RS16230 at 3641.902 kb on + strand, within HGI48_RS16230 at 3641.932 kb on + strand, within HGI48_RS16230 at 3641.932 kb on + strand, within HGI48_RS16230 at 3641.932 kb on + strand, within HGI48_RS16230 at 3641.933 kb on - strand, within HGI48_RS16230 at 3641.965 kb on + strand, within HGI48_RS16230 at 3641.965 kb on + strand, within HGI48_RS16230 at 3641.965 kb on + strand, within HGI48_RS16230 at 3641.965 kb on + strand, within HGI48_RS16230 at 3641.965 kb on + strand, within HGI48_RS16230 at 3641.965 kb on + strand, within HGI48_RS16230 at 3641.966 kb on - strand, within HGI48_RS16230 at 3641.966 kb on - strand, within HGI48_RS16230 at 3641.966 kb on - strand, within HGI48_RS16230 at 3641.966 kb on - strand, within HGI48_RS16230 at 3642.065 kb on + strand, within HGI48_RS16230 at 3642.065 kb on + strand at 3642.065 kb on + strand, within HGI48_RS16230 at 3642.065 kb on + strand, within HGI48_RS16230 at 3642.066 kb on - strand, within HGI48_RS16230 at 3642.066 kb on - strand, within HGI48_RS16230 at 3642.066 kb on - strand, within HGI48_RS16230 at 3642.066 kb on - strand, within HGI48_RS16230 at 3642.081 kb on - strand, within HGI48_RS16230 at 3642.196 kb on + strand, within HGI48_RS16230 at 3642.205 kb on + strand, within HGI48_RS16230 at 3642.205 kb on + strand, within HGI48_RS16230 at 3642.205 kb on + strand, within HGI48_RS16230 at 3642.205 kb on + strand, within HGI48_RS16230 at 3642.205 kb on + strand, within HGI48_RS16230 at 3642.205 kb on + strand, within HGI48_RS16230 at 3642.205 kb on + strand, within HGI48_RS16230 at 3642.205 kb on + strand at 3642.206 kb on - strand, within HGI48_RS16230 at 3642.206 kb on - strand, within HGI48_RS16230 at 3642.206 kb on - strand, within HGI48_RS16230 at 3642.206 kb on - strand, within HGI48_RS16230 at 3642.206 kb on - strand, within HGI48_RS16230 at 3642.206 kb on - strand, within HGI48_RS16230 at 3642.207 kb on + strand, within HGI48_RS16230 at 3642.207 kb on + strand, within HGI48_RS16230 at 3642.208 kb on - strand, within HGI48_RS16230 at 3642.208 kb on - strand, within HGI48_RS16230 at 3642.208 kb on - strand, within HGI48_RS16230 at 3642.390 kb on + strand at 3642.390 kb on + strand, within HGI48_RS16230 at 3642.467 kb on + strand at 3642.515 kb on + strand at 3642.516 kb on - strand at 3642.560 kb on + strand at 3642.606 kb on - strand, within HGI48_RS16235 at 3642.606 kb on - strand, within HGI48_RS16235 at 3642.613 kb on + strand, within HGI48_RS16235 at 3642.715 kb on + strand at 3642.716 kb on - strand at 3642.746 kb on + strand at 3642.746 kb on + strand, within HGI48_RS16235 at 3642.746 kb on + strand, within HGI48_RS16235 at 3642.746 kb on + strand, within HGI48_RS16235 at 3642.747 kb on - strand, within HGI48_RS16235 at 3642.747 kb on - strand, within HGI48_RS16235 at 3642.747 kb on - strand, within HGI48_RS16235 at 3642.747 kb on - strand, within HGI48_RS16235 at 3642.747 kb on - strand at 3642.894 kb on - strand, within HGI48_RS16235 at 3642.918 kb on + strand, within HGI48_RS16235 at 3643.086 kb on + strand, within HGI48_RS16235 at 3643.181 kb on + strand, within HGI48_RS16235 at 3643.322 kb on + strand, within HGI48_RS16235 at 3643.413 kb on + strand at 3643.458 kb on + strand at 3643.459 kb on - strand at 3643.459 kb on - strand at 3643.472 kb on + strand at 3643.472 kb on + strand at 3643.472 kb on + strand at 3643.472 kb on + strand at 3643.472 kb on + strand at 3643.472 kb on + strand at 3643.473 kb on - strand at 3643.473 kb on - strand at 3643.473 kb on - strand at 3643.473 kb on - strand at 3643.473 kb on - strand at 3643.473 kb on - strand at 3643.473 kb on - strand at 3643.475 kb on + strand at 3643.475 kb on + strand at 3643.475 kb on + strand at 3643.475 kb on + strand at 3643.475 kb on + strand at 3643.475 kb on + strand at 3643.475 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 3,640,768 + HGI48_RS16225 0.67 -0.0 3,640,768 + HGI48_RS16225 0.67 +0.4 3,640,768 + HGI48_RS16225 0.67 +0.6 3,640,768 + +1.0 3,640,769 - HGI48_RS16225 0.67 -2.0 3,640,769 - HGI48_RS16225 0.67 +0.7 3,640,769 - HGI48_RS16225 0.67 +0.6 3,640,769 - HGI48_RS16225 0.67 -0.0 3,640,769 - HGI48_RS16225 0.67 -1.2 3,640,813 + HGI48_RS16225 0.69 +1.3 3,640,813 + HGI48_RS16225 0.69 +1.4 3,641,020 + HGI48_RS16225 0.77 -0.1 3,641,044 + HGI48_RS16225 0.78 -1.0 3,641,047 + HGI48_RS16225 0.78 +1.1 3,641,047 + HGI48_RS16225 0.78 +0.1 3,641,097 + HGI48_RS16225 0.80 +0.6 3,641,271 - HGI48_RS16225 0.87 -1.2 3,641,285 + HGI48_RS16225 0.87 -0.2 3,641,285 + HGI48_RS16225 0.87 -0.4 3,641,286 - HGI48_RS16225 0.87 -1.6 3,641,338 + HGI48_RS16225 0.89 -2.6 3,641,339 - HGI48_RS16225 0.89 -0.5 3,641,339 - HGI48_RS16225 0.89 +0.2 3,641,339 - HGI48_RS16225 0.89 +1.2 3,641,341 + HGI48_RS16225 0.89 +0.6 3,641,596 + -1.8 3,641,596 + +1.5 3,641,614 + -0.4 3,641,615 - -3.0 3,641,624 + +0.8 3,641,624 + -0.4 3,641,625 - +0.9 3,641,626 + +1.6 3,641,626 + -1.6 3,641,626 + -1.4 3,641,626 + -0.0 3,641,626 + -0.4 3,641,626 + -0.1 3,641,626 + +0.3 3,641,626 + +1.0 3,641,626 + -1.6 3,641,626 + +0.9 3,641,626 + -1.4 3,641,626 + -1.0 3,641,627 - -0.1 3,641,627 - +1.7 3,641,627 - -2.1 3,641,627 - +0.2 3,641,627 - -0.8 3,641,627 - +0.4 3,641,627 - -0.7 3,641,627 - -0.9 3,641,627 - +0.8 3,641,630 + -0.6 3,641,631 - -0.3 3,641,631 - -1.0 3,641,631 - -0.4 3,641,631 - -0.8 3,641,657 - -1.6 3,641,657 - -1.8 3,641,698 + -0.7 3,641,701 + -1.8 3,641,701 + -2.4 3,641,701 + +0.6 3,641,704 + +0.1 3,641,704 + -2.4 3,641,705 - -0.3 3,641,753 + -2.2 3,641,776 + +0.6 3,641,777 - -2.2 3,641,777 - -1.0 3,641,777 - +1.2 3,641,833 + HGI48_RS16230 0.11 -2.2 3,641,833 + HGI48_RS16230 0.11 +0.8 3,641,834 - HGI48_RS16230 0.12 +0.9 3,641,834 - HGI48_RS16230 0.12 -2.8 3,641,882 + HGI48_RS16230 0.18 -0.4 3,641,883 - HGI48_RS16230 0.18 -2.2 3,641,883 - HGI48_RS16230 0.18 -1.0 3,641,898 + HGI48_RS16230 0.20 -2.6 3,641,899 - HGI48_RS16230 0.21 +1.2 3,641,899 - HGI48_RS16230 0.21 -2.2 3,641,902 + HGI48_RS16230 0.21 +0.4 3,641,902 + HGI48_RS16230 0.21 -1.4 3,641,932 + HGI48_RS16230 0.25 -0.9 3,641,932 + HGI48_RS16230 0.25 -3.0 3,641,932 + HGI48_RS16230 0.25 -0.4 3,641,933 - HGI48_RS16230 0.25 +1.1 3,641,965 + HGI48_RS16230 0.30 -0.9 3,641,965 + HGI48_RS16230 0.30 -3.1 3,641,965 + HGI48_RS16230 0.30 -1.2 3,641,965 + HGI48_RS16230 0.30 +0.2 3,641,965 + HGI48_RS16230 0.30 +0.3 3,641,965 + HGI48_RS16230 0.30 -3.2 3,641,966 - HGI48_RS16230 0.30 -1.3 3,641,966 - HGI48_RS16230 0.30 -0.8 3,641,966 - HGI48_RS16230 0.30 +1.1 3,641,966 - HGI48_RS16230 0.30 -1.4 3,642,065 + HGI48_RS16230 0.43 -1.4 3,642,065 + +1.6 3,642,065 + HGI48_RS16230 0.43 +0.8 3,642,065 + HGI48_RS16230 0.43 +0.6 3,642,066 - HGI48_RS16230 0.44 -1.0 3,642,066 - HGI48_RS16230 0.44 -2.4 3,642,066 - HGI48_RS16230 0.44 -2.9 3,642,066 - HGI48_RS16230 0.44 -0.3 3,642,081 - HGI48_RS16230 0.46 -2.2 3,642,196 + HGI48_RS16230 0.61 +0.2 3,642,205 + HGI48_RS16230 0.63 +0.1 3,642,205 + HGI48_RS16230 0.63 +0.2 3,642,205 + HGI48_RS16230 0.63 +0.6 3,642,205 + HGI48_RS16230 0.63 -1.0 3,642,205 + HGI48_RS16230 0.63 -1.2 3,642,205 + HGI48_RS16230 0.63 -0.9 3,642,205 + HGI48_RS16230 0.63 -1.8 3,642,205 + -1.0 3,642,206 - HGI48_RS16230 0.63 -0.4 3,642,206 - HGI48_RS16230 0.63 +1.3 3,642,206 - HGI48_RS16230 0.63 -1.4 3,642,206 - HGI48_RS16230 0.63 -0.4 3,642,206 - HGI48_RS16230 0.63 -1.6 3,642,206 - HGI48_RS16230 0.63 -0.7 3,642,207 + HGI48_RS16230 0.63 -0.2 3,642,207 + HGI48_RS16230 0.63 -0.8 3,642,208 - HGI48_RS16230 0.63 -0.8 3,642,208 - HGI48_RS16230 0.63 -1.0 3,642,208 - HGI48_RS16230 0.63 -1.9 3,642,390 + -0.0 3,642,390 + HGI48_RS16230 0.88 -2.8 3,642,467 + -2.8 3,642,515 + +1.6 3,642,516 - -0.2 3,642,560 + -0.8 3,642,606 - HGI48_RS16235 0.11 +0.6 3,642,606 - HGI48_RS16235 0.11 +0.6 3,642,613 + HGI48_RS16235 0.12 +1.8 3,642,715 + -1.0 3,642,716 - +2.3 3,642,746 + +0.6 3,642,746 + HGI48_RS16235 0.26 +0.2 3,642,746 + HGI48_RS16235 0.26 +1.1 3,642,746 + HGI48_RS16235 0.26 -0.1 3,642,747 - HGI48_RS16235 0.26 +1.3 3,642,747 - HGI48_RS16235 0.26 +0.1 3,642,747 - HGI48_RS16235 0.26 +0.2 3,642,747 - HGI48_RS16235 0.26 +0.6 3,642,747 - +1.0 3,642,894 - HGI48_RS16235 0.41 +1.6 3,642,918 + HGI48_RS16235 0.43 -0.3 3,643,086 + HGI48_RS16235 0.60 -0.4 3,643,181 + HGI48_RS16235 0.70 +1.6 3,643,322 + HGI48_RS16235 0.85 +1.7 3,643,413 + +1.0 3,643,458 + +1.6 3,643,459 - +0.6 3,643,459 - +0.2 3,643,472 + +1.4 3,643,472 + -0.2 3,643,472 + +0.3 3,643,472 + +1.1 3,643,472 + +0.3 3,643,472 + +1.0 3,643,473 - +0.1 3,643,473 - -3.4 3,643,473 - -2.2 3,643,473 - +1.2 3,643,473 - +1.4 3,643,473 - +1.2 3,643,473 - -1.7 3,643,475 + -0.4 3,643,475 + -1.8 3,643,475 + +3.9 3,643,475 + -1.0 3,643,475 + +2.6 3,643,475 + +1.2 3,643,475 + +0.3
Or see this region's nucleotide sequence