Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS16230

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,640,768	+		HGI48_RS16225	0.67	-0.0
3,640,768	+		HGI48_RS16225	0.67	+0.4
3,640,768	+		HGI48_RS16225	0.67	+0.6
3,640,768	+				+1.0
3,640,769	-		HGI48_RS16225	0.67	-2.0
3,640,769	-		HGI48_RS16225	0.67	+0.7
3,640,769	-		HGI48_RS16225	0.67	+0.6
3,640,769	-		HGI48_RS16225	0.67	-0.0
3,640,769	-		HGI48_RS16225	0.67	-1.2
3,640,813	+		HGI48_RS16225	0.69	+1.3
3,640,813	+		HGI48_RS16225	0.69	+1.4
3,641,020	+		HGI48_RS16225	0.77	-0.1
3,641,044	+		HGI48_RS16225	0.78	-1.0
3,641,047	+		HGI48_RS16225	0.78	+1.1
3,641,047	+		HGI48_RS16225	0.78	+0.1
3,641,097	+		HGI48_RS16225	0.80	+0.6
3,641,271	-		HGI48_RS16225	0.87	-1.2
3,641,285	+		HGI48_RS16225	0.87	-0.2
3,641,285	+		HGI48_RS16225	0.87	-0.4
3,641,286	-		HGI48_RS16225	0.87	-1.6
3,641,338	+		HGI48_RS16225	0.89	-2.6
3,641,339	-		HGI48_RS16225	0.89	-0.5
3,641,339	-		HGI48_RS16225	0.89	+0.2
3,641,339	-		HGI48_RS16225	0.89	+1.2
3,641,341	+		HGI48_RS16225	0.89	+0.6
3,641,596	+				-1.8
3,641,596	+				+1.5
3,641,614	+				-0.4
3,641,615	-				-3.0
3,641,624	+				+0.8
3,641,624	+				-0.4
3,641,625	-				+0.9
3,641,626	+				+1.6
3,641,626	+				-1.6
3,641,626	+				-1.4
3,641,626	+				-0.0
3,641,626	+				-0.4
3,641,626	+				-0.1
3,641,626	+				+0.3
3,641,626	+				+1.0
3,641,626	+				-1.6
3,641,626	+				+0.9
3,641,626	+				-1.4
3,641,626	+				-1.0
3,641,627	-				-0.1
3,641,627	-				+1.7
3,641,627	-				-2.1
3,641,627	-				+0.2
3,641,627	-				-0.8
3,641,627	-				+0.4
3,641,627	-				-0.7
3,641,627	-				-0.9
3,641,627	-				+0.8
3,641,630	+				-0.6
3,641,631	-				-0.3
3,641,631	-				-1.0
3,641,631	-				-0.4
3,641,631	-				-0.8
3,641,657	-				-1.6
3,641,657	-				-1.8
3,641,698	+				-0.7
3,641,701	+				-1.8
3,641,701	+				-2.4
3,641,701	+				+0.6
3,641,704	+				+0.1
3,641,704	+				-2.4
3,641,705	-				-0.3
3,641,753	+				-2.2
3,641,776	+				+0.6
3,641,777	-				-2.2
3,641,777	-				-1.0
3,641,777	-				+1.2
3,641,833	+		HGI48_RS16230	0.11	-2.2
3,641,833	+		HGI48_RS16230	0.11	+0.8
3,641,834	-		HGI48_RS16230	0.12	+0.9
3,641,834	-		HGI48_RS16230	0.12	-2.8
3,641,882	+		HGI48_RS16230	0.18	-0.4
3,641,883	-		HGI48_RS16230	0.18	-2.2
3,641,883	-		HGI48_RS16230	0.18	-1.0
3,641,898	+		HGI48_RS16230	0.20	-2.6
3,641,899	-		HGI48_RS16230	0.21	+1.2
3,641,899	-		HGI48_RS16230	0.21	-2.2
3,641,902	+		HGI48_RS16230	0.21	+0.4
3,641,902	+		HGI48_RS16230	0.21	-1.4
3,641,932	+		HGI48_RS16230	0.25	-0.9
3,641,932	+		HGI48_RS16230	0.25	-3.0
3,641,932	+		HGI48_RS16230	0.25	-0.4
3,641,933	-		HGI48_RS16230	0.25	+1.1
3,641,965	+		HGI48_RS16230	0.30	-0.9
3,641,965	+		HGI48_RS16230	0.30	-3.1
3,641,965	+		HGI48_RS16230	0.30	-1.2
3,641,965	+		HGI48_RS16230	0.30	+0.2
3,641,965	+		HGI48_RS16230	0.30	+0.3
3,641,965	+		HGI48_RS16230	0.30	-3.2
3,641,966	-		HGI48_RS16230	0.30	-1.3
3,641,966	-		HGI48_RS16230	0.30	-0.8
3,641,966	-		HGI48_RS16230	0.30	+1.1
3,641,966	-		HGI48_RS16230	0.30	-1.4
3,642,065	+		HGI48_RS16230	0.43	-1.4
3,642,065	+				+1.6
3,642,065	+		HGI48_RS16230	0.43	+0.8
3,642,065	+		HGI48_RS16230	0.43	+0.6
3,642,066	-		HGI48_RS16230	0.44	-1.0
3,642,066	-		HGI48_RS16230	0.44	-2.4
3,642,066	-		HGI48_RS16230	0.44	-2.9
3,642,066	-		HGI48_RS16230	0.44	-0.3
3,642,081	-		HGI48_RS16230	0.46	-2.2
3,642,196	+		HGI48_RS16230	0.61	+0.2
3,642,205	+		HGI48_RS16230	0.63	+0.1
3,642,205	+		HGI48_RS16230	0.63	+0.2
3,642,205	+		HGI48_RS16230	0.63	+0.6
3,642,205	+		HGI48_RS16230	0.63	-1.0
3,642,205	+		HGI48_RS16230	0.63	-1.2
3,642,205	+		HGI48_RS16230	0.63	-0.9
3,642,205	+		HGI48_RS16230	0.63	-1.8
3,642,205	+				-1.0
3,642,206	-		HGI48_RS16230	0.63	-0.4
3,642,206	-		HGI48_RS16230	0.63	+1.3
3,642,206	-		HGI48_RS16230	0.63	-1.4
3,642,206	-		HGI48_RS16230	0.63	-0.4
3,642,206	-		HGI48_RS16230	0.63	-1.6
3,642,206	-		HGI48_RS16230	0.63	-0.7
3,642,207	+		HGI48_RS16230	0.63	-0.2
3,642,207	+		HGI48_RS16230	0.63	-0.8
3,642,208	-		HGI48_RS16230	0.63	-0.8
3,642,208	-		HGI48_RS16230	0.63	-1.0
3,642,208	-		HGI48_RS16230	0.63	-1.9
3,642,390	+				-0.0
3,642,390	+		HGI48_RS16230	0.88	-2.8
3,642,467	+				-2.8
3,642,515	+				+1.6
3,642,516	-				-0.2
3,642,560	+				-0.8
3,642,606	-		HGI48_RS16235	0.11	+0.6
3,642,606	-		HGI48_RS16235	0.11	+0.6
3,642,613	+		HGI48_RS16235	0.12	+1.8
3,642,715	+				-1.0
3,642,716	-				+2.3
3,642,746	+				+0.6
3,642,746	+		HGI48_RS16235	0.26	+0.2
3,642,746	+		HGI48_RS16235	0.26	+1.1
3,642,746	+		HGI48_RS16235	0.26	-0.1
3,642,747	-		HGI48_RS16235	0.26	+1.3
3,642,747	-		HGI48_RS16235	0.26	+0.1
3,642,747	-		HGI48_RS16235	0.26	+0.2
3,642,747	-		HGI48_RS16235	0.26	+0.6
3,642,747	-				+1.0
3,642,894	-		HGI48_RS16235	0.41	+1.6
3,642,918	+		HGI48_RS16235	0.43	-0.3
3,643,086	+		HGI48_RS16235	0.60	-0.4
3,643,181	+		HGI48_RS16235	0.70	+1.6
3,643,322	+		HGI48_RS16235	0.85	+1.7
3,643,413	+				+1.0
3,643,458	+				+1.6
3,643,459	-				+0.6
3,643,459	-				+0.2
3,643,472	+				+1.4
3,643,472	+				-0.2
3,643,472	+				+0.3
3,643,472	+				+1.1
3,643,472	+				+0.3
3,643,472	+				+1.0
3,643,473	-				+0.1
3,643,473	-				-3.4
3,643,473	-				-2.2
3,643,473	-				+1.2
3,643,473	-				+1.4
3,643,473	-				+1.2
3,643,473	-				-1.7
3,643,475	+				-0.4
3,643,475	+				-1.8
3,643,475	+				+3.9
3,643,475	+				-1.0
3,643,475	+				+2.6
3,643,475	+				+1.2
3,643,475	+				+0.3