Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS16175

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,628,623	-		HGI48_RS16170	0.10	+1.1
3,628,636	-		HGI48_RS16170	0.13	+1.1
3,628,652	-		HGI48_RS16170	0.15	-0.8
3,628,652	-		HGI48_RS16170	0.15	+1.7
3,628,652	-		HGI48_RS16170	0.15	-1.8
3,628,660	-		HGI48_RS16170	0.17	-1.0
3,628,660	-		HGI48_RS16170	0.17	-1.8
3,628,671	+		HGI48_RS16170	0.19	-0.5
3,628,672	-		HGI48_RS16170	0.19	-2.5
3,628,672	-		HGI48_RS16170	0.19	+1.0
3,628,743	+				-1.0
3,628,744	-		HGI48_RS16170	0.32	+1.2
3,628,916	-		HGI48_RS16170	0.62	+0.5
3,629,130	-				-1.5
3,629,130	-				+0.1
3,629,186	+				-1.5
3,629,186	+				-0.0
3,629,302	+		HGI48_RS16175	0.19	-1.3
3,629,302	+		HGI48_RS16175	0.19	-1.1
3,629,303	-		HGI48_RS16175	0.19	-0.3
3,629,316	+		HGI48_RS16175	0.21	-0.9
3,629,316	+		HGI48_RS16175	0.21	+0.4
3,629,317	-		HGI48_RS16175	0.21	-1.6
3,629,370	+		HGI48_RS16175	0.28	-1.5
3,629,370	+		HGI48_RS16175	0.28	+0.7
3,629,370	+		HGI48_RS16175	0.28	-1.0
3,629,371	-		HGI48_RS16175	0.28	-1.5
3,629,371	-		HGI48_RS16175	0.28	+1.0
3,629,371	-		HGI48_RS16175	0.28	+0.3
3,629,375	+		HGI48_RS16175	0.29	-0.8
3,629,375	+		HGI48_RS16175	0.29	-2.8
3,629,375	+		HGI48_RS16175	0.29	-1.0
3,629,375	+		HGI48_RS16175	0.29	-0.8
3,629,375	+		HGI48_RS16175	0.29	-0.7
3,629,375	+				+1.8
3,629,375	+		HGI48_RS16175	0.29	-0.2
3,629,376	-		HGI48_RS16175	0.29	-0.6
3,629,376	-		HGI48_RS16175	0.29	-1.0
3,629,376	-		HGI48_RS16175	0.29	-0.5
3,629,376	-		HGI48_RS16175	0.29	+0.1
3,629,376	-		HGI48_RS16175	0.29	-0.2
3,629,376	-		HGI48_RS16175	0.29	-2.5
3,629,376	-		HGI48_RS16175	0.29	-1.6
3,629,376	-		HGI48_RS16175	0.29	+1.0
3,629,380	-				+1.0
3,629,380	-		HGI48_RS16175	0.29	+0.3
3,629,380	-		HGI48_RS16175	0.29	-1.3
3,629,380	-		HGI48_RS16175	0.29	-0.8
3,629,380	-				-0.0
3,629,380	-				-0.5
3,629,380	-		HGI48_RS16175	0.29	+0.8
3,629,387	+		HGI48_RS16175	0.30	-1.0
3,629,445	-		HGI48_RS16175	0.38	+0.5
3,629,464	-		HGI48_RS16175	0.41	-1.2
3,629,560	+		HGI48_RS16175	0.54	-1.8
3,629,560	+		HGI48_RS16175	0.54	-1.3
3,629,561	-		HGI48_RS16175	0.54	-1.9
3,629,561	-		HGI48_RS16175	0.54	-1.3
3,629,561	-		HGI48_RS16175	0.54	+1.0
3,629,585	+		HGI48_RS16175	0.58	+0.2
3,629,585	+				-0.0
3,629,585	+		HGI48_RS16175	0.58	-1.9
3,629,586	-		HGI48_RS16175	0.58	-0.9
3,629,617	+		HGI48_RS16175	0.62	-1.3
3,629,618	-		HGI48_RS16175	0.62	-1.3
3,629,618	-		HGI48_RS16175	0.62	-0.6
3,629,618	-		HGI48_RS16175	0.62	-0.7
3,629,709	+		HGI48_RS16175	0.75	-0.6
3,629,808	+		HGI48_RS16175	0.89	-1.0
3,629,809	-		HGI48_RS16175	0.89	+0.7
3,629,816	+		HGI48_RS16175	0.90	-0.1
3,629,816	+		HGI48_RS16175	0.90	-1.5
3,629,816	+		HGI48_RS16175	0.90	+0.5
3,629,817	-				-2.6
3,629,817	-				+0.1
3,629,817	-				-0.8
3,629,819	+				+0.3
3,629,820	-				-2.3
3,629,820	-				-0.3
3,629,820	-				-1.3
3,629,820	-				+0.1
3,629,820	-				-0.0
3,629,895	-				-2.9
3,629,895	-				+0.5
3,629,895	-				+1.7
3,629,898	-				+1.8
3,629,898	-				+0.5
3,629,935	+				-1.0
3,629,936	-				+1.2
3,629,944	+				-2.3
3,629,945	-				+0.1
3,629,972	+				+1.1
3,629,972	+				-0.6
3,629,972	+				+0.9
3,629,972	+				+0.6
3,629,973	-				-0.3
3,629,973	-				+1.0
3,629,973	-				+0.6
3,629,973	-				-1.0
3,629,973	-				-1.4
3,629,973	-				-0.7
3,629,973	-				-2.3
3,629,973	-				-0.4
3,629,973	-				-1.4
3,629,973	-				+0.1
3,629,973	-				-1.1
3,629,973	-				-1.4
3,630,140	+		HGI48_RS16180	0.27	-0.1
3,630,151	-		HGI48_RS16180	0.28	-0.2
3,630,151	-		HGI48_RS16180	0.28	-0.8
3,630,196	+		HGI48_RS16180	0.34	+0.1
3,630,196	+		HGI48_RS16180	0.34	-0.7
3,630,196	+		HGI48_RS16180	0.34	+0.3
3,630,196	+		HGI48_RS16180	0.34	-0.5
3,630,196	+		HGI48_RS16180	0.34	-0.2
3,630,196	+		HGI48_RS16180	0.34	+1.0
3,630,196	+		HGI48_RS16180	0.34	-2.8
3,630,196	+		HGI48_RS16180	0.34	-1.0
3,630,197	-		HGI48_RS16180	0.35	+0.7
3,630,197	-		HGI48_RS16180	0.35	-2.0
3,630,197	-				+0.6
3,630,197	-		HGI48_RS16180	0.35	+0.1
3,630,197	-		HGI48_RS16180	0.35	-0.4
3,630,197	-		HGI48_RS16180	0.35	+0.6
3,630,197	-		HGI48_RS16180	0.35	+1.4
3,630,197	-		HGI48_RS16180	0.35	+1.6
3,630,197	-		HGI48_RS16180	0.35	-1.0
3,630,197	-		HGI48_RS16180	0.35	-1.4
3,630,197	-		HGI48_RS16180	0.35	+0.2
3,630,197	-		HGI48_RS16180	0.35	-0.4
3,630,197	-		HGI48_RS16180	0.35	-1.1
3,630,201	+		HGI48_RS16180	0.35	+1.9
3,630,201	+		HGI48_RS16180	0.35	-0.5
3,630,201	+		HGI48_RS16180	0.35	-0.3
3,630,202	-		HGI48_RS16180	0.35	-2.0
3,630,202	-		HGI48_RS16180	0.35	-0.9
3,630,216	+		HGI48_RS16180	0.37	-0.4
3,630,216	+		HGI48_RS16180	0.37	-2.8
3,630,216	+		HGI48_RS16180	0.37	+1.0
3,630,217	-		HGI48_RS16180	0.37	-0.3
3,630,217	-		HGI48_RS16180	0.37	+0.7
3,630,217	-		HGI48_RS16180	0.37	-1.3
3,630,220	+		HGI48_RS16180	0.38	-1.8
3,630,221	-		HGI48_RS16180	0.38	-0.9
3,630,245	-		HGI48_RS16180	0.41	-0.0
3,630,278	-		HGI48_RS16180	0.45	-0.1
3,630,278	-				-1.0
3,630,278	-		HGI48_RS16180	0.45	-0.2
3,630,284	+				-0.0
3,630,289	+		HGI48_RS16180	0.47	-0.2
3,630,289	+		HGI48_RS16180	0.47	-0.7
3,630,289	+		HGI48_RS16180	0.47	+1.6
3,630,290	-		HGI48_RS16180	0.47	+0.1
3,630,299	+		HGI48_RS16180	0.48	-2.4
3,630,317	-		HGI48_RS16180	0.50	+0.6
3,630,317	-		HGI48_RS16180	0.50	-1.4
3,630,355	+		HGI48_RS16180	0.55	+0.0
3,630,417	+		HGI48_RS16180	0.64	+0.4
3,630,417	+		HGI48_RS16180	0.64	-0.3
3,630,417	+		HGI48_RS16180	0.64	-0.4
3,630,417	+		HGI48_RS16180	0.64	+0.4
3,630,417	+		HGI48_RS16180	0.64	-1.8
3,630,417	+		HGI48_RS16180	0.64	-1.8
3,630,417	+		HGI48_RS16180	0.64	+0.5
3,630,417	+		HGI48_RS16180	0.64	+0.6
3,630,417	+		HGI48_RS16180	0.64	+0.1
3,630,418	-		HGI48_RS16180	0.64	-1.8
3,630,418	-		HGI48_RS16180	0.64	-0.2
3,630,418	-		HGI48_RS16180	0.64	-1.8
3,630,418	-		HGI48_RS16180	0.64	+0.6
3,630,418	-		HGI48_RS16180	0.64	+0.3
3,630,418	-		HGI48_RS16180	0.64	-2.1
3,630,418	-		HGI48_RS16180	0.64	-0.4
3,630,418	-		HGI48_RS16180	0.64	-2.4
3,630,434	+		HGI48_RS16180	0.66	-0.4
3,630,435	-		HGI48_RS16180	0.66	-0.4
3,630,435	-		HGI48_RS16180	0.66	-1.8
3,630,498	-		HGI48_RS16180	0.74	-0.1
3,630,574	-		HGI48_RS16180	0.84	+0.1
3,630,666	+				-0.4
3,630,724	+				+1.3
3,630,725	-				-1.0
3,630,759	+				+0.6
3,630,760	-				+2.0
3,630,760	-				+0.8
3,630,760	-				-0.3
3,630,761	+				+0.6
3,630,761	+				+0.4
3,630,761	+				+1.4
3,630,761	+				-0.2
3,630,762	-				+1.4
3,630,762	-				+0.2
3,630,762	-				-0.8
3,630,762	-				+3.1
3,630,771	-				+0.8