Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS15730

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,534,762	+		HGI48_RS15725	0.18	+0.2
3,534,762	+		HGI48_RS15725	0.18	+0.1
3,534,762	+		HGI48_RS15725	0.18	-0.3
3,534,762	+		HGI48_RS15725	0.18	-0.3
3,534,763	-		HGI48_RS15725	0.18	-2.0
3,534,763	-		HGI48_RS15725	0.18	-0.0
3,534,763	-		HGI48_RS15725	0.18	-0.1
3,534,876	-		HGI48_RS15725	0.28	-1.4
3,534,876	-		HGI48_RS15725	0.28	-0.6
3,535,001	+		HGI48_RS15725	0.40	-2.0
3,535,002	-		HGI48_RS15725	0.40	+0.2
3,535,032	+		HGI48_RS15725	0.43	-1.8
3,535,032	+		HGI48_RS15725	0.43	-1.4
3,535,032	+		HGI48_RS15725	0.43	+0.2
3,535,032	+				-0.0
3,535,032	+		HGI48_RS15725	0.43	+0.3
3,535,033	-		HGI48_RS15725	0.43	+1.2
3,535,060	-		HGI48_RS15725	0.45	+1.2
3,535,060	-		HGI48_RS15725	0.45	+0.9
3,535,101	+		HGI48_RS15725	0.49	+1.1
3,535,101	+		HGI48_RS15725	0.49	-2.0
3,535,102	-				+0.6
3,535,102	-		HGI48_RS15725	0.49	-2.8
3,535,160	+		HGI48_RS15725	0.54	+0.3
3,535,160	+		HGI48_RS15725	0.54	+0.1
3,535,161	-		HGI48_RS15725	0.54	+0.9
3,535,161	-		HGI48_RS15725	0.54	+0.4
3,535,274	+		HGI48_RS15725	0.65	+0.4
3,535,275	-		HGI48_RS15725	0.65	-0.1
3,535,284	+		HGI48_RS15725	0.66	-0.1
3,535,284	+		HGI48_RS15725	0.66	+0.4
3,535,284	+		HGI48_RS15725	0.66	-2.8
3,535,284	+		HGI48_RS15725	0.66	-0.8
3,535,285	-		HGI48_RS15725	0.66	+0.3
3,535,285	-				+0.6
3,535,285	-				+0.6
3,535,285	-		HGI48_RS15725	0.66	-1.4
3,535,348	-		HGI48_RS15725	0.71	+1.4
3,535,430	-		HGI48_RS15725	0.79	-2.2
3,535,430	-		HGI48_RS15725	0.79	+0.6
3,535,430	-		HGI48_RS15725	0.79	-0.8
3,535,430	-		HGI48_RS15725	0.79	+0.6
3,535,451	+		HGI48_RS15725	0.81	+1.0
3,535,457	+		HGI48_RS15725	0.81	-2.9
3,535,457	+		HGI48_RS15725	0.81	-2.4
3,535,457	+		HGI48_RS15725	0.81	+0.4
3,535,457	+		HGI48_RS15725	0.81	-0.1
3,535,458	-		HGI48_RS15725	0.81	-0.0
3,535,458	-		HGI48_RS15725	0.81	+0.6
3,535,458	-		HGI48_RS15725	0.81	-0.4
3,535,458	-				+2.6
3,535,461	+		HGI48_RS15725	0.82	+0.5
3,535,462	-		HGI48_RS15725	0.82	+0.6
3,535,462	-		HGI48_RS15725	0.82	-0.8
3,535,462	-		HGI48_RS15725	0.82	+0.2
3,535,491	-		HGI48_RS15725	0.84	+0.3
3,535,515	+		HGI48_RS15725	0.87	-0.4
3,535,537	+		HGI48_RS15725	0.89	-0.0
3,535,537	+				-0.0
3,535,537	+		HGI48_RS15725	0.89	-0.3
3,535,542	+		HGI48_RS15725	0.89	-0.4
3,535,552	-				-1.2
3,535,552	-				-1.8
3,535,552	-				-1.8
3,535,574	+				-1.0
3,535,575	-				-2.4
3,535,584	-				-0.6
3,535,615	-				-0.6
3,535,615	-				+1.3
3,535,615	-				-2.2
3,535,654	+				-0.2
3,535,856	+		HGI48_RS15730	0.32	-2.2
3,535,856	+		HGI48_RS15730	0.32	-0.9
3,535,856	+		HGI48_RS15730	0.32	+0.6
3,535,857	-		HGI48_RS15730	0.33	-0.8
3,535,871	+		HGI48_RS15730	0.37	-2.0
3,535,871	+		HGI48_RS15730	0.37	-1.8
3,535,871	+		HGI48_RS15730	0.37	+0.6
3,535,872	-		HGI48_RS15730	0.37	-1.4
3,535,872	-				+1.6
3,535,872	-				-0.4
3,535,933	+		HGI48_RS15730	0.55	-1.8
3,535,933	+		HGI48_RS15730	0.55	-1.7
3,535,933	+		HGI48_RS15730	0.55	-1.0
3,535,933	+		HGI48_RS15730	0.55	+0.6
3,535,934	-		HGI48_RS15730	0.55	+0.2
3,535,934	-		HGI48_RS15730	0.55	-0.8
3,535,934	-		HGI48_RS15730	0.55	+0.1
3,535,934	-		HGI48_RS15730	0.55	-0.3
3,535,934	-		HGI48_RS15730	0.55	-2.6
3,535,959	-		HGI48_RS15730	0.63	+0.2
3,535,986	-		HGI48_RS15730	0.71	-0.6
3,536,037	+		HGI48_RS15730	0.86	-2.2
3,536,037	+		HGI48_RS15730	0.86	-0.7
3,536,037	+		HGI48_RS15730	0.86	-2.0
3,536,038	-		HGI48_RS15730	0.86	-0.0
3,536,038	-		HGI48_RS15730	0.86	-0.8
3,536,038	-		HGI48_RS15730	0.86	-1.2
3,536,060	+				-0.2
3,536,061	-				-1.0
3,536,063	+				-2.4
3,536,105	+				+0.1
3,536,105	+				-0.7
3,536,105	+				-2.0
3,536,105	+				-1.6
3,536,105	+				-0.7
3,536,106	-				+0.6
3,536,106	-				-2.0
3,536,106	-				-0.8
3,536,106	-				-0.6
3,536,106	-				+0.2
3,536,106	-				-0.6
3,536,106	-				+1.3
3,536,109	+				-0.8
3,536,178	-				+0.6
3,536,178	-				-0.4
3,536,178	-				+0.4
3,536,182	+				-0.4
3,536,182	+				-1.0
3,536,182	+				-2.8
3,536,183	-				-0.4
3,536,183	-				+1.6
3,536,183	-				+0.2
3,536,188	+				+0.6
3,536,188	+				-0.1
3,536,189	-				-1.8
3,536,189	-				-0.1
3,536,237	-				+1.7
3,536,295	+				-0.3
3,536,296	-				+0.6
3,536,296	-				-0.4
3,536,305	-				+0.6
3,536,305	-				+0.9
3,536,305	-				+0.6
3,536,309	+				+1.2
3,536,309	+				-0.4
3,536,310	-				+0.6
3,536,317	+				+1.8
3,536,317	+				-2.2
3,536,317	+				+1.0
3,536,317	+				-1.9
3,536,318	-				+1.7
3,536,318	-				-2.9
3,536,318	-				+0.6
3,536,321	+		HGI48_RS15735	0.10	+0.2
3,536,321	+		HGI48_RS15735	0.10	-0.6
3,536,321	+		HGI48_RS15735	0.10	-0.7
3,536,321	+		HGI48_RS15735	0.10	+0.4
3,536,321	+		HGI48_RS15735	0.10	-1.2
3,536,322	-		HGI48_RS15735	0.10	+0.1
3,536,322	-		HGI48_RS15735	0.10	-0.0
3,536,322	-		HGI48_RS15735	0.10	+1.2
3,536,322	-				+0.6
3,536,322	-				+1.2
3,536,322	-		HGI48_RS15735	0.10	+2.3
3,536,322	-		HGI48_RS15735	0.10	-3.4
3,536,322	-				-0.4
3,536,354	+		HGI48_RS15735	0.12	+0.6
3,536,366	+		HGI48_RS15735	0.13	+1.2
3,536,366	+		HGI48_RS15735	0.13	+0.2
3,536,367	-		HGI48_RS15735	0.13	+0.9
3,536,641	+		HGI48_RS15735	0.34	+1.2
3,536,641	+		HGI48_RS15735	0.34	+0.6
3,536,641	+		HGI48_RS15735	0.34	+0.6
3,536,641	+		HGI48_RS15735	0.34	-1.4
3,536,724	+		HGI48_RS15735	0.40	+0.7
3,536,724	+		HGI48_RS15735	0.40	+0.3
3,536,724	+		HGI48_RS15735	0.40	-2.0
3,536,724	+		HGI48_RS15735	0.40	+0.2
3,536,724	+		HGI48_RS15735	0.40	+1.0
3,536,724	+		HGI48_RS15735	0.40	+1.1
3,536,724	+		HGI48_RS15735	0.40	+0.6
3,536,724	+		HGI48_RS15735	0.40	-0.7
3,536,724	+		HGI48_RS15735	0.40	-1.8
3,536,724	+		HGI48_RS15735	0.40	-0.8
3,536,724	+		HGI48_RS15735	0.40	+0.2
3,536,724	+		HGI48_RS15735	0.40	-0.4
3,536,724	+				-1.0
3,536,724	+		HGI48_RS15735	0.40	+0.1
3,536,724	+		HGI48_RS15735	0.40	-0.0
3,536,724	+		HGI48_RS15735	0.40	-1.3
3,536,724	+		HGI48_RS15735	0.40	-0.1
3,536,725	-		HGI48_RS15735	0.40	+0.6
3,536,725	-		HGI48_RS15735	0.40	-2.6
3,536,725	-		HGI48_RS15735	0.40	+0.5
3,536,725	-		HGI48_RS15735	0.40	-0.1
3,536,725	-		HGI48_RS15735	0.40	+0.5
3,536,725	-				+0.6
3,536,725	-		HGI48_RS15735	0.40	-0.8
3,536,725	-		HGI48_RS15735	0.40	+0.4
3,536,752	-		HGI48_RS15735	0.42	+0.2
3,536,769	+		HGI48_RS15735	0.43	+1.2
3,536,769	+		HGI48_RS15735	0.43	-0.4
3,536,770	-		HGI48_RS15735	0.44	+1.6
3,536,770	-		HGI48_RS15735	0.44	+1.6
3,536,770	-		HGI48_RS15735	0.44	-0.2
3,536,854	-		HGI48_RS15735	0.50	+0.8
3,536,854	-		HGI48_RS15735	0.50	-1.2
3,536,882	+		HGI48_RS15735	0.52	-2.4
3,537,042	+		HGI48_RS15735	0.64	+0.9
3,537,043	-		HGI48_RS15735	0.64	+0.3