Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS14540 and HGI48_RS14545 are separated by 101 nucleotides HGI48_RS14545 and HGI48_RS14550 are separated by 876 nucleotides
HGI48_RS14540: HGI48_RS14540 - endonuclease SmrB, at 3,263,264 to 3,263,806
_RS14540
HGI48_RS14545: HGI48_RS14545 - phosphohistidine phosphatase SixA, at 3,263,908 to 3,264,393
_RS14545
HGI48_RS14550: HGI48_RS14550 - fatty acid oxidation complex subunit alpha FadJ, at 3,265,270 to 3,267,462
_RS14550
Position (kb)
3263
3264
3265 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3262.949 kb on + strand at 3262.950 kb on - strand at 3262.975 kb on - strand at 3262.975 kb on - strand at 3262.975 kb on - strand at 3262.975 kb on - strand at 3263.029 kb on + strand at 3263.105 kb on + strand at 3263.106 kb on - strand at 3263.106 kb on - strand at 3263.106 kb on - strand at 3263.106 kb on - strand at 3263.109 kb on + strand at 3263.110 kb on - strand at 3263.110 kb on - strand at 3263.110 kb on - strand at 3263.110 kb on - strand at 3263.110 kb on - strand at 3263.217 kb on + strand at 3263.218 kb on - strand at 3263.218 kb on - strand at 3263.230 kb on + strand at 3263.231 kb on - strand at 3263.351 kb on + strand, within HGI48_RS14540 at 3263.351 kb on + strand at 3263.351 kb on + strand, within HGI48_RS14540 at 3263.351 kb on + strand, within HGI48_RS14540 at 3263.351 kb on + strand at 3263.351 kb on + strand, within HGI48_RS14540 at 3263.351 kb on + strand, within HGI48_RS14540 at 3263.351 kb on + strand at 3263.352 kb on - strand, within HGI48_RS14540 at 3263.352 kb on - strand, within HGI48_RS14540 at 3263.352 kb on - strand, within HGI48_RS14540 at 3263.352 kb on - strand, within HGI48_RS14540 at 3263.352 kb on - strand, within HGI48_RS14540 at 3263.352 kb on - strand, within HGI48_RS14540 at 3263.352 kb on - strand, within HGI48_RS14540 at 3263.352 kb on - strand at 3263.483 kb on + strand, within HGI48_RS14540 at 3263.483 kb on + strand, within HGI48_RS14540 at 3263.484 kb on - strand, within HGI48_RS14540 at 3263.632 kb on + strand, within HGI48_RS14540 at 3263.632 kb on + strand, within HGI48_RS14540 at 3263.632 kb on + strand, within HGI48_RS14540 at 3263.632 kb on + strand, within HGI48_RS14540 at 3263.632 kb on + strand, within HGI48_RS14540 at 3263.632 kb on + strand, within HGI48_RS14540 at 3263.632 kb on + strand, within HGI48_RS14540 at 3263.633 kb on - strand, within HGI48_RS14540 at 3263.633 kb on - strand, within HGI48_RS14540 at 3263.633 kb on - strand, within HGI48_RS14540 at 3263.636 kb on + strand, within HGI48_RS14540 at 3263.718 kb on + strand at 3263.718 kb on + strand, within HGI48_RS14540 at 3263.718 kb on + strand, within HGI48_RS14540 at 3263.719 kb on - strand, within HGI48_RS14540 at 3263.719 kb on - strand at 3263.804 kb on + strand at 3263.864 kb on + strand at 3263.865 kb on - strand at 3263.865 kb on - strand at 3263.957 kb on + strand at 3263.958 kb on - strand, within HGI48_RS14545 at 3263.958 kb on - strand, within HGI48_RS14545 at 3263.959 kb on + strand, within HGI48_RS14545 at 3263.959 kb on + strand, within HGI48_RS14545 at 3263.960 kb on - strand, within HGI48_RS14545 at 3264.174 kb on - strand, within HGI48_RS14545 at 3264.174 kb on - strand at 3264.236 kb on + strand, within HGI48_RS14545 at 3264.236 kb on + strand, within HGI48_RS14545 at 3264.236 kb on + strand, within HGI48_RS14545 at 3264.237 kb on - strand, within HGI48_RS14545 at 3264.261 kb on + strand, within HGI48_RS14545 at 3264.326 kb on - strand, within HGI48_RS14545 at 3264.393 kb on + strand at 3264.396 kb on + strand at 3264.397 kb on - strand at 3264.404 kb on + strand at 3264.404 kb on + strand at 3264.405 kb on - strand at 3264.405 kb on - strand at 3264.407 kb on - strand at 3264.427 kb on - strand at 3264.481 kb on + strand at 3264.591 kb on + strand at 3264.591 kb on + strand at 3264.591 kb on + strand at 3264.591 kb on + strand at 3264.591 kb on + strand at 3264.592 kb on - strand at 3264.658 kb on + strand at 3264.701 kb on - strand at 3264.802 kb on + strand at 3264.851 kb on + strand at 3264.852 kb on - strand at 3264.853 kb on + strand at 3264.978 kb on + strand at 3265.081 kb on + strand at 3265.082 kb on - strand at 3265.088 kb on + strand at 3265.122 kb on - strand at 3265.203 kb on - strand at 3265.393 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 3,262,949 + +0.5 3,262,950 - +0.7 3,262,975 - +0.7 3,262,975 - -0.3 3,262,975 - +1.2 3,262,975 - -1.1 3,263,029 + -0.3 3,263,105 + -1.1 3,263,106 - +1.0 3,263,106 - +0.5 3,263,106 - -0.2 3,263,106 - +1.0 3,263,109 + -0.3 3,263,110 - +2.5 3,263,110 - -0.3 3,263,110 - -0.7 3,263,110 - -2.3 3,263,110 - -1.6 3,263,217 + -0.2 3,263,218 - -1.8 3,263,218 - +1.2 3,263,230 + +0.2 3,263,231 - -1.5 3,263,351 + HGI48_RS14540 0.16 -1.3 3,263,351 + -1.1 3,263,351 + HGI48_RS14540 0.16 +0.2 3,263,351 + HGI48_RS14540 0.16 +0.1 3,263,351 + -0.1 3,263,351 + HGI48_RS14540 0.16 +0.2 3,263,351 + HGI48_RS14540 0.16 -0.7 3,263,351 + -1.1 3,263,352 - HGI48_RS14540 0.16 -0.1 3,263,352 - HGI48_RS14540 0.16 +1.6 3,263,352 - HGI48_RS14540 0.16 +0.5 3,263,352 - HGI48_RS14540 0.16 -0.3 3,263,352 - HGI48_RS14540 0.16 +1.2 3,263,352 - HGI48_RS14540 0.16 -1.4 3,263,352 - HGI48_RS14540 0.16 +0.1 3,263,352 - +2.1 3,263,483 + HGI48_RS14540 0.40 -0.8 3,263,483 + HGI48_RS14540 0.40 -2.5 3,263,484 - HGI48_RS14540 0.41 -0.2 3,263,632 + HGI48_RS14540 0.68 -1.3 3,263,632 + HGI48_RS14540 0.68 +0.8 3,263,632 + HGI48_RS14540 0.68 -0.5 3,263,632 + HGI48_RS14540 0.68 -0.2 3,263,632 + HGI48_RS14540 0.68 -1.2 3,263,632 + HGI48_RS14540 0.68 +0.2 3,263,632 + HGI48_RS14540 0.68 -1.2 3,263,633 - HGI48_RS14540 0.68 -0.5 3,263,633 - HGI48_RS14540 0.68 -0.1 3,263,633 - HGI48_RS14540 0.68 -0.8 3,263,636 + HGI48_RS14540 0.69 -0.8 3,263,718 + -0.1 3,263,718 + HGI48_RS14540 0.84 -0.8 3,263,718 + HGI48_RS14540 0.84 -0.1 3,263,719 - HGI48_RS14540 0.84 -0.8 3,263,719 - +2.3 3,263,804 + -0.2 3,263,864 + -1.8 3,263,865 - -1.8 3,263,865 - -1.0 3,263,957 + -0.1 3,263,958 - HGI48_RS14545 0.10 +0.5 3,263,958 - HGI48_RS14545 0.10 -0.5 3,263,959 + HGI48_RS14545 0.10 -1.5 3,263,959 + HGI48_RS14545 0.10 -1.1 3,263,960 - HGI48_RS14545 0.11 -0.9 3,264,174 - HGI48_RS14545 0.55 +0.0 3,264,174 - +0.5 3,264,236 + HGI48_RS14545 0.67 -0.5 3,264,236 + HGI48_RS14545 0.67 -0.9 3,264,236 + HGI48_RS14545 0.67 -1.8 3,264,237 - HGI48_RS14545 0.68 -0.2 3,264,261 + HGI48_RS14545 0.73 -1.8 3,264,326 - HGI48_RS14545 0.86 -0.4 3,264,393 + -1.0 3,264,396 + -0.5 3,264,397 - +0.3 3,264,404 + -0.5 3,264,404 + -0.1 3,264,405 - -1.5 3,264,405 - -2.1 3,264,407 - -0.3 3,264,427 - +0.5 3,264,481 + -0.5 3,264,591 + -1.5 3,264,591 + -0.3 3,264,591 + +0.5 3,264,591 + -0.5 3,264,591 + -0.1 3,264,592 - -1.7 3,264,658 + -0.5 3,264,701 - -0.0 3,264,802 + -0.5 3,264,851 + -1.8 3,264,852 - -2.7 3,264,853 + +0.7 3,264,978 + -0.8 3,265,081 + -1.8 3,265,082 - -1.5 3,265,088 + -3.1 3,265,122 - -0.5 3,265,203 - -2.3 3,265,393 + -0.5
Or see this region's nucleotide sequence