Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS14545

Experiment: PDB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS14540 and HGI48_RS14545 are separated by 101 nucleotidesHGI48_RS14545 and HGI48_RS14550 are separated by 876 nucleotides HGI48_RS14540: HGI48_RS14540 - endonuclease SmrB, at 3,263,264 to 3,263,806 _RS14540 HGI48_RS14545: HGI48_RS14545 - phosphohistidine phosphatase SixA, at 3,263,908 to 3,264,393 _RS14545 HGI48_RS14550: HGI48_RS14550 - fatty acid oxidation complex subunit alpha FadJ, at 3,265,270 to 3,267,462 _RS14550 Position (kb) 3263 3264 3265Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3262.949 kb on + strandat 3262.950 kb on - strandat 3262.975 kb on - strandat 3262.975 kb on - strandat 3262.975 kb on - strandat 3262.975 kb on - strandat 3263.029 kb on + strandat 3263.105 kb on + strandat 3263.106 kb on - strandat 3263.106 kb on - strandat 3263.106 kb on - strandat 3263.106 kb on - strandat 3263.109 kb on + strandat 3263.110 kb on - strandat 3263.110 kb on - strandat 3263.110 kb on - strandat 3263.110 kb on - strandat 3263.110 kb on - strandat 3263.217 kb on + strandat 3263.218 kb on - strandat 3263.218 kb on - strandat 3263.230 kb on + strandat 3263.231 kb on - strandat 3263.351 kb on + strand, within HGI48_RS14540at 3263.351 kb on + strandat 3263.351 kb on + strand, within HGI48_RS14540at 3263.351 kb on + strand, within HGI48_RS14540at 3263.351 kb on + strandat 3263.351 kb on + strand, within HGI48_RS14540at 3263.351 kb on + strand, within HGI48_RS14540at 3263.351 kb on + strandat 3263.352 kb on - strand, within HGI48_RS14540at 3263.352 kb on - strand, within HGI48_RS14540at 3263.352 kb on - strand, within HGI48_RS14540at 3263.352 kb on - strand, within HGI48_RS14540at 3263.352 kb on - strand, within HGI48_RS14540at 3263.352 kb on - strand, within HGI48_RS14540at 3263.352 kb on - strand, within HGI48_RS14540at 3263.352 kb on - strandat 3263.483 kb on + strand, within HGI48_RS14540at 3263.483 kb on + strand, within HGI48_RS14540at 3263.484 kb on - strand, within HGI48_RS14540at 3263.632 kb on + strand, within HGI48_RS14540at 3263.632 kb on + strand, within HGI48_RS14540at 3263.632 kb on + strand, within HGI48_RS14540at 3263.632 kb on + strand, within HGI48_RS14540at 3263.632 kb on + strand, within HGI48_RS14540at 3263.632 kb on + strand, within HGI48_RS14540at 3263.632 kb on + strand, within HGI48_RS14540at 3263.633 kb on - strand, within HGI48_RS14540at 3263.633 kb on - strand, within HGI48_RS14540at 3263.633 kb on - strand, within HGI48_RS14540at 3263.636 kb on + strand, within HGI48_RS14540at 3263.718 kb on + strandat 3263.718 kb on + strand, within HGI48_RS14540at 3263.718 kb on + strand, within HGI48_RS14540at 3263.719 kb on - strand, within HGI48_RS14540at 3263.719 kb on - strandat 3263.804 kb on + strandat 3263.864 kb on + strandat 3263.865 kb on - strandat 3263.865 kb on - strandat 3263.957 kb on + strandat 3263.958 kb on - strand, within HGI48_RS14545at 3263.958 kb on - strand, within HGI48_RS14545at 3263.959 kb on + strand, within HGI48_RS14545at 3263.959 kb on + strand, within HGI48_RS14545at 3263.960 kb on - strand, within HGI48_RS14545at 3264.174 kb on - strand, within HGI48_RS14545at 3264.174 kb on - strandat 3264.236 kb on + strand, within HGI48_RS14545at 3264.236 kb on + strand, within HGI48_RS14545at 3264.236 kb on + strand, within HGI48_RS14545at 3264.237 kb on - strand, within HGI48_RS14545at 3264.261 kb on + strand, within HGI48_RS14545at 3264.326 kb on - strand, within HGI48_RS14545at 3264.393 kb on + strandat 3264.396 kb on + strandat 3264.397 kb on - strandat 3264.404 kb on + strandat 3264.404 kb on + strandat 3264.405 kb on - strandat 3264.405 kb on - strandat 3264.407 kb on - strandat 3264.427 kb on - strandat 3264.481 kb on + strandat 3264.591 kb on + strandat 3264.591 kb on + strandat 3264.591 kb on + strandat 3264.591 kb on + strandat 3264.591 kb on + strandat 3264.592 kb on - strandat 3264.658 kb on + strandat 3264.701 kb on - strandat 3264.802 kb on + strandat 3264.851 kb on + strandat 3264.852 kb on - strandat 3264.853 kb on + strandat 3264.978 kb on + strandat 3265.081 kb on + strandat 3265.082 kb on - strandat 3265.088 kb on + strandat 3265.122 kb on - strandat 3265.203 kb on - strandat 3265.393 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PDB
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3,262,949 + +0.5
3,262,950 - +0.7
3,262,975 - +0.7
3,262,975 - -0.3
3,262,975 - +1.2
3,262,975 - -1.1
3,263,029 + -0.3
3,263,105 + -1.1
3,263,106 - +1.0
3,263,106 - +0.5
3,263,106 - -0.2
3,263,106 - +1.0
3,263,109 + -0.3
3,263,110 - +2.5
3,263,110 - -0.3
3,263,110 - -0.7
3,263,110 - -2.3
3,263,110 - -1.6
3,263,217 + -0.2
3,263,218 - -1.8
3,263,218 - +1.2
3,263,230 + +0.2
3,263,231 - -1.5
3,263,351 + HGI48_RS14540 0.16 -1.3
3,263,351 + -1.1
3,263,351 + HGI48_RS14540 0.16 +0.2
3,263,351 + HGI48_RS14540 0.16 +0.1
3,263,351 + -0.1
3,263,351 + HGI48_RS14540 0.16 +0.2
3,263,351 + HGI48_RS14540 0.16 -0.7
3,263,351 + -1.1
3,263,352 - HGI48_RS14540 0.16 -0.1
3,263,352 - HGI48_RS14540 0.16 +1.6
3,263,352 - HGI48_RS14540 0.16 +0.5
3,263,352 - HGI48_RS14540 0.16 -0.3
3,263,352 - HGI48_RS14540 0.16 +1.2
3,263,352 - HGI48_RS14540 0.16 -1.4
3,263,352 - HGI48_RS14540 0.16 +0.1
3,263,352 - +2.1
3,263,483 + HGI48_RS14540 0.40 -0.8
3,263,483 + HGI48_RS14540 0.40 -2.5
3,263,484 - HGI48_RS14540 0.41 -0.2
3,263,632 + HGI48_RS14540 0.68 -1.3
3,263,632 + HGI48_RS14540 0.68 +0.8
3,263,632 + HGI48_RS14540 0.68 -0.5
3,263,632 + HGI48_RS14540 0.68 -0.2
3,263,632 + HGI48_RS14540 0.68 -1.2
3,263,632 + HGI48_RS14540 0.68 +0.2
3,263,632 + HGI48_RS14540 0.68 -1.2
3,263,633 - HGI48_RS14540 0.68 -0.5
3,263,633 - HGI48_RS14540 0.68 -0.1
3,263,633 - HGI48_RS14540 0.68 -0.8
3,263,636 + HGI48_RS14540 0.69 -0.8
3,263,718 + -0.1
3,263,718 + HGI48_RS14540 0.84 -0.8
3,263,718 + HGI48_RS14540 0.84 -0.1
3,263,719 - HGI48_RS14540 0.84 -0.8
3,263,719 - +2.3
3,263,804 + -0.2
3,263,864 + -1.8
3,263,865 - -1.8
3,263,865 - -1.0
3,263,957 + -0.1
3,263,958 - HGI48_RS14545 0.10 +0.5
3,263,958 - HGI48_RS14545 0.10 -0.5
3,263,959 + HGI48_RS14545 0.10 -1.5
3,263,959 + HGI48_RS14545 0.10 -1.1
3,263,960 - HGI48_RS14545 0.11 -0.9
3,264,174 - HGI48_RS14545 0.55 +0.0
3,264,174 - +0.5
3,264,236 + HGI48_RS14545 0.67 -0.5
3,264,236 + HGI48_RS14545 0.67 -0.9
3,264,236 + HGI48_RS14545 0.67 -1.8
3,264,237 - HGI48_RS14545 0.68 -0.2
3,264,261 + HGI48_RS14545 0.73 -1.8
3,264,326 - HGI48_RS14545 0.86 -0.4
3,264,393 + -1.0
3,264,396 + -0.5
3,264,397 - +0.3
3,264,404 + -0.5
3,264,404 + -0.1
3,264,405 - -1.5
3,264,405 - -2.1
3,264,407 - -0.3
3,264,427 - +0.5
3,264,481 + -0.5
3,264,591 + -1.5
3,264,591 + -0.3
3,264,591 + +0.5
3,264,591 + -0.5
3,264,591 + -0.1
3,264,592 - -1.7
3,264,658 + -0.5
3,264,701 - -0.0
3,264,802 + -0.5
3,264,851 + -1.8
3,264,852 - -2.7
3,264,853 + +0.7
3,264,978 + -0.8
3,265,081 + -1.8
3,265,082 - -1.5
3,265,088 + -3.1
3,265,122 - -0.5
3,265,203 - -2.3
3,265,393 + -0.5

Or see this region's nucleotide sequence