Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS13650

Experiment: PDB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS13640 and HGI48_RS13645 are separated by 697 nucleotidesHGI48_RS13645 and HGI48_RS13650 overlap by 17 nucleotidesHGI48_RS13650 and HGI48_RS13655 overlap by 4 nucleotidesHGI48_RS13655 and HGI48_RS13660 are separated by 483 nucleotides HGI48_RS13640: HGI48_RS13640 - right-handed parallel beta-helix repeat-containing protein, at 2,986,450 to 2,987,727 _RS13640 HGI48_RS13645: HGI48_RS13645 - phage holin family protein, at 2,988,425 to 2,988,736 _RS13645 HGI48_RS13650: HGI48_RS13650 - glycoside hydrolase family 104 protein, at 2,988,720 to 2,989,214 _RS13650 HGI48_RS13655: HGI48_RS13655 - LysB family phage lysis regulatory protein, at 2,989,211 to 2,989,651 _RS13655 HGI48_RS13660: HGI48_RS13660 - hypothetical protein, at 2,990,135 to 2,990,332 _RS13660 Position (kb) 2988 2989 2990Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2987.758 kb on + strandat 2987.780 kb on + strandat 2987.927 kb on - strandat 2987.955 kb on + strandat 2987.956 kb on - strandat 2987.959 kb on + strandat 2987.962 kb on - strandat 2987.964 kb on + strandat 2987.964 kb on + strandat 2987.965 kb on - strandat 2987.984 kb on - strandat 2987.992 kb on + strandat 2988.020 kb on + strandat 2988.024 kb on + strandat 2988.025 kb on - strandat 2988.120 kb on + strandat 2988.124 kb on - strandat 2988.124 kb on - strandat 2988.124 kb on - strandat 2988.172 kb on - strandat 2988.176 kb on - strandat 2988.253 kb on + strandat 2988.253 kb on + strandat 2988.253 kb on + strandat 2988.271 kb on + strandat 2988.284 kb on - strandat 2988.284 kb on - strandat 2988.316 kb on + strandat 2988.317 kb on - strandat 2988.317 kb on - strandat 2988.331 kb on - strandat 2988.342 kb on + strandat 2988.343 kb on - strandat 2988.343 kb on - strandat 2988.456 kb on + strandat 2988.456 kb on + strandat 2988.456 kb on + strandat 2988.456 kb on + strandat 2988.457 kb on - strand, within HGI48_RS13645at 2988.457 kb on - strandat 2988.457 kb on - strand, within HGI48_RS13645at 2988.457 kb on - strand, within HGI48_RS13645at 2988.460 kb on + strandat 2988.460 kb on + strand, within HGI48_RS13645at 2988.511 kb on + strand, within HGI48_RS13645at 2988.586 kb on - strandat 2988.586 kb on - strand, within HGI48_RS13645at 2988.734 kb on + strandat 2988.735 kb on - strandat 2988.735 kb on - strandat 2988.747 kb on - strandat 2989.031 kb on - strand, within HGI48_RS13650at 2989.034 kb on + strandat 2989.144 kb on - strand, within HGI48_RS13650at 2989.185 kb on + strandat 2989.186 kb on - strandat 2989.240 kb on + strandat 2989.241 kb on - strandat 2989.302 kb on + strand, within HGI48_RS13655at 2989.482 kb on + strand, within HGI48_RS13655at 2989.504 kb on + strand, within HGI48_RS13655at 2989.537 kb on + strand, within HGI48_RS13655at 2989.538 kb on - strand, within HGI48_RS13655at 2989.538 kb on - strand, within HGI48_RS13655at 2989.538 kb on - strand, within HGI48_RS13655at 2989.708 kb on + strandat 2989.708 kb on + strandat 2989.708 kb on + strandat 2989.709 kb on - strandat 2989.709 kb on - strandat 2989.709 kb on - strandat 2989.709 kb on - strandat 2989.709 kb on - strandat 2989.766 kb on - strandat 2989.922 kb on + strandat 2989.922 kb on + strandat 2989.923 kb on - strandat 2989.923 kb on - strandat 2990.007 kb on + strandat 2990.008 kb on - strandat 2990.008 kb on - strandat 2990.008 kb on - strandat 2990.009 kb on + strandat 2990.009 kb on + strandat 2990.068 kb on - strandat 2990.068 kb on - strandat 2990.068 kb on - strandat 2990.072 kb on + strandat 2990.072 kb on + strandat 2990.179 kb on + strand, within HGI48_RS13660at 2990.185 kb on + strand, within HGI48_RS13660at 2990.188 kb on + strand, within HGI48_RS13660at 2990.188 kb on + strand, within HGI48_RS13660at 2990.189 kb on - strand, within HGI48_RS13660

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Per-strain Table

Position Strand Gene LocusTag Fraction PDB
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2,987,758 + -1.1
2,987,780 + +0.5
2,987,927 - -1.8
2,987,955 + +0.5
2,987,956 - -1.8
2,987,959 + -1.1
2,987,962 - -0.7
2,987,964 + +0.1
2,987,964 + +0.0
2,987,965 - -1.1
2,987,984 - -0.5
2,987,992 + -0.5
2,988,020 + -0.8
2,988,024 + -0.3
2,988,025 - +0.3
2,988,120 + -0.1
2,988,124 - +0.0
2,988,124 - -2.1
2,988,124 - +0.2
2,988,172 - +0.0
2,988,176 - -0.1
2,988,253 + -0.0
2,988,253 + +1.8
2,988,253 + +1.9
2,988,271 + -1.1
2,988,284 - -0.0
2,988,284 - -1.0
2,988,316 + +1.4
2,988,317 - -3.4
2,988,317 - +0.5
2,988,331 - -0.8
2,988,342 + -0.9
2,988,343 - -0.2
2,988,343 - +1.1
2,988,456 + +1.7
2,988,456 + -0.5
2,988,456 + +2.2
2,988,456 + -1.8
2,988,457 - HGI48_RS13645 0.10 -1.4
2,988,457 - +1.8
2,988,457 - HGI48_RS13645 0.10 -0.2
2,988,457 - HGI48_RS13645 0.10 -1.6
2,988,460 + -1.1
2,988,460 + HGI48_RS13645 0.11 +1.3
2,988,511 + HGI48_RS13645 0.28 +1.1
2,988,586 - -0.1
2,988,586 - HGI48_RS13645 0.52 +0.7
2,988,734 + +1.5
2,988,735 - -1.8
2,988,735 - +0.0
2,988,747 - -0.2
2,989,031 - HGI48_RS13650 0.63 -1.6
2,989,034 + -0.5
2,989,144 - HGI48_RS13650 0.86 -1.3
2,989,185 + +1.3
2,989,186 - +1.3
2,989,240 + +0.5
2,989,241 - +0.3
2,989,302 + HGI48_RS13655 0.21 -1.3
2,989,482 + HGI48_RS13655 0.61 -0.8
2,989,504 + HGI48_RS13655 0.66 -0.5
2,989,537 + HGI48_RS13655 0.74 -0.5
2,989,538 - HGI48_RS13655 0.74 -0.1
2,989,538 - HGI48_RS13655 0.74 -0.1
2,989,538 - HGI48_RS13655 0.74 -0.7
2,989,708 + -0.9
2,989,708 + -0.5
2,989,708 + +0.2
2,989,709 - -1.1
2,989,709 - -0.1
2,989,709 - +1.1
2,989,709 - -1.1
2,989,709 - -0.5
2,989,766 - +0.9
2,989,922 + +0.7
2,989,922 + -2.7
2,989,923 - +0.0
2,989,923 - -1.7
2,990,007 + +0.9
2,990,008 - -0.1
2,990,008 - +1.5
2,990,008 - -0.5
2,990,009 + +0.8
2,990,009 + +0.7
2,990,068 - -0.5
2,990,068 - +1.0
2,990,068 - +0.5
2,990,072 + -0.3
2,990,072 + -1.5
2,990,179 + HGI48_RS13660 0.22 -0.3
2,990,185 + HGI48_RS13660 0.25 -1.2
2,990,188 + HGI48_RS13660 0.27 +0.0
2,990,188 + HGI48_RS13660 0.27 -0.8
2,990,189 - HGI48_RS13660 0.27 +0.1

Or see this region's nucleotide sequence