Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS13640 and HGI48_RS13645 are separated by 697 nucleotides HGI48_RS13645 and HGI48_RS13650 overlap by 17 nucleotides HGI48_RS13650 and HGI48_RS13655 overlap by 4 nucleotides HGI48_RS13655 and HGI48_RS13660 are separated by 483 nucleotides
HGI48_RS13640: HGI48_RS13640 - right-handed parallel beta-helix repeat-containing protein, at 2,986,450 to 2,987,727
_RS13640
HGI48_RS13645: HGI48_RS13645 - phage holin family protein, at 2,988,425 to 2,988,736
_RS13645
HGI48_RS13650: HGI48_RS13650 - glycoside hydrolase family 104 protein, at 2,988,720 to 2,989,214
_RS13650
HGI48_RS13655: HGI48_RS13655 - LysB family phage lysis regulatory protein, at 2,989,211 to 2,989,651
_RS13655
HGI48_RS13660: HGI48_RS13660 - hypothetical protein, at 2,990,135 to 2,990,332
_RS13660
Position (kb)
2988
2989
2990 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2987.758 kb on + strand at 2987.780 kb on + strand at 2987.927 kb on - strand at 2987.955 kb on + strand at 2987.956 kb on - strand at 2987.959 kb on + strand at 2987.962 kb on - strand at 2987.964 kb on + strand at 2987.964 kb on + strand at 2987.965 kb on - strand at 2987.984 kb on - strand at 2987.992 kb on + strand at 2988.020 kb on + strand at 2988.024 kb on + strand at 2988.025 kb on - strand at 2988.120 kb on + strand at 2988.124 kb on - strand at 2988.124 kb on - strand at 2988.124 kb on - strand at 2988.172 kb on - strand at 2988.176 kb on - strand at 2988.253 kb on + strand at 2988.253 kb on + strand at 2988.253 kb on + strand at 2988.271 kb on + strand at 2988.284 kb on - strand at 2988.284 kb on - strand at 2988.316 kb on + strand at 2988.317 kb on - strand at 2988.317 kb on - strand at 2988.331 kb on - strand at 2988.342 kb on + strand at 2988.343 kb on - strand at 2988.343 kb on - strand at 2988.456 kb on + strand at 2988.456 kb on + strand at 2988.456 kb on + strand at 2988.456 kb on + strand at 2988.457 kb on - strand, within HGI48_RS13645 at 2988.457 kb on - strand at 2988.457 kb on - strand, within HGI48_RS13645 at 2988.457 kb on - strand, within HGI48_RS13645 at 2988.460 kb on + strand at 2988.460 kb on + strand, within HGI48_RS13645 at 2988.511 kb on + strand, within HGI48_RS13645 at 2988.586 kb on - strand at 2988.586 kb on - strand, within HGI48_RS13645 at 2988.734 kb on + strand at 2988.735 kb on - strand at 2988.735 kb on - strand at 2988.747 kb on - strand at 2989.031 kb on - strand, within HGI48_RS13650 at 2989.034 kb on + strand at 2989.144 kb on - strand, within HGI48_RS13650 at 2989.185 kb on + strand at 2989.186 kb on - strand at 2989.240 kb on + strand at 2989.241 kb on - strand at 2989.302 kb on + strand, within HGI48_RS13655 at 2989.482 kb on + strand, within HGI48_RS13655 at 2989.504 kb on + strand, within HGI48_RS13655 at 2989.537 kb on + strand, within HGI48_RS13655 at 2989.538 kb on - strand, within HGI48_RS13655 at 2989.538 kb on - strand, within HGI48_RS13655 at 2989.538 kb on - strand, within HGI48_RS13655 at 2989.708 kb on + strand at 2989.708 kb on + strand at 2989.708 kb on + strand at 2989.709 kb on - strand at 2989.709 kb on - strand at 2989.709 kb on - strand at 2989.709 kb on - strand at 2989.709 kb on - strand at 2989.766 kb on - strand at 2989.922 kb on + strand at 2989.922 kb on + strand at 2989.923 kb on - strand at 2989.923 kb on - strand at 2990.007 kb on + strand at 2990.008 kb on - strand at 2990.008 kb on - strand at 2990.008 kb on - strand at 2990.009 kb on + strand at 2990.009 kb on + strand at 2990.068 kb on - strand at 2990.068 kb on - strand at 2990.068 kb on - strand at 2990.072 kb on + strand at 2990.072 kb on + strand at 2990.179 kb on + strand, within HGI48_RS13660 at 2990.185 kb on + strand, within HGI48_RS13660 at 2990.188 kb on + strand, within HGI48_RS13660 at 2990.188 kb on + strand, within HGI48_RS13660 at 2990.189 kb on - strand, within HGI48_RS13660
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 2,987,758 + -1.1 2,987,780 + +0.5 2,987,927 - -1.8 2,987,955 + +0.5 2,987,956 - -1.8 2,987,959 + -1.1 2,987,962 - -0.7 2,987,964 + +0.1 2,987,964 + +0.0 2,987,965 - -1.1 2,987,984 - -0.5 2,987,992 + -0.5 2,988,020 + -0.8 2,988,024 + -0.3 2,988,025 - +0.3 2,988,120 + -0.1 2,988,124 - +0.0 2,988,124 - -2.1 2,988,124 - +0.2 2,988,172 - +0.0 2,988,176 - -0.1 2,988,253 + -0.0 2,988,253 + +1.8 2,988,253 + +1.9 2,988,271 + -1.1 2,988,284 - -0.0 2,988,284 - -1.0 2,988,316 + +1.4 2,988,317 - -3.4 2,988,317 - +0.5 2,988,331 - -0.8 2,988,342 + -0.9 2,988,343 - -0.2 2,988,343 - +1.1 2,988,456 + +1.7 2,988,456 + -0.5 2,988,456 + +2.2 2,988,456 + -1.8 2,988,457 - HGI48_RS13645 0.10 -1.4 2,988,457 - +1.8 2,988,457 - HGI48_RS13645 0.10 -0.2 2,988,457 - HGI48_RS13645 0.10 -1.6 2,988,460 + -1.1 2,988,460 + HGI48_RS13645 0.11 +1.3 2,988,511 + HGI48_RS13645 0.28 +1.1 2,988,586 - -0.1 2,988,586 - HGI48_RS13645 0.52 +0.7 2,988,734 + +1.5 2,988,735 - -1.8 2,988,735 - +0.0 2,988,747 - -0.2 2,989,031 - HGI48_RS13650 0.63 -1.6 2,989,034 + -0.5 2,989,144 - HGI48_RS13650 0.86 -1.3 2,989,185 + +1.3 2,989,186 - +1.3 2,989,240 + +0.5 2,989,241 - +0.3 2,989,302 + HGI48_RS13655 0.21 -1.3 2,989,482 + HGI48_RS13655 0.61 -0.8 2,989,504 + HGI48_RS13655 0.66 -0.5 2,989,537 + HGI48_RS13655 0.74 -0.5 2,989,538 - HGI48_RS13655 0.74 -0.1 2,989,538 - HGI48_RS13655 0.74 -0.1 2,989,538 - HGI48_RS13655 0.74 -0.7 2,989,708 + -0.9 2,989,708 + -0.5 2,989,708 + +0.2 2,989,709 - -1.1 2,989,709 - -0.1 2,989,709 - +1.1 2,989,709 - -1.1 2,989,709 - -0.5 2,989,766 - +0.9 2,989,922 + +0.7 2,989,922 + -2.7 2,989,923 - +0.0 2,989,923 - -1.7 2,990,007 + +0.9 2,990,008 - -0.1 2,990,008 - +1.5 2,990,008 - -0.5 2,990,009 + +0.8 2,990,009 + +0.7 2,990,068 - -0.5 2,990,068 - +1.0 2,990,068 - +0.5 2,990,072 + -0.3 2,990,072 + -1.5 2,990,179 + HGI48_RS13660 0.22 -0.3 2,990,185 + HGI48_RS13660 0.25 -1.2 2,990,188 + HGI48_RS13660 0.27 +0.0 2,990,188 + HGI48_RS13660 0.27 -0.8 2,990,189 - HGI48_RS13660 0.27 +0.1
Or see this region's nucleotide sequence