Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS13295

Experiment: PDB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS13290 and HGI48_RS13295 are separated by 146 nucleotides HGI48_RS13290: HGI48_RS13290 - PepSY domain-containing protein, at 2,909,967 to 2,911,469 _RS13290 HGI48_RS13295: HGI48_RS13295 - MCP four helix bundle domain-containing protein, at 2,911,616 to 2,913,280 _RS13295 Position (kb) 2911 2912 2913 2914Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2910.667 kb on + strand, within HGI48_RS13290at 2910.715 kb on + strandat 2910.825 kb on - strand, within HGI48_RS13290at 2910.825 kb on - strand, within HGI48_RS13290at 2910.855 kb on - strandat 2910.868 kb on + strand, within HGI48_RS13290at 2910.868 kb on + strandat 2910.868 kb on + strand, within HGI48_RS13290at 2910.868 kb on + strand, within HGI48_RS13290at 2910.868 kb on + strand, within HGI48_RS13290at 2910.868 kb on + strand, within HGI48_RS13290at 2910.868 kb on + strand, within HGI48_RS13290at 2910.869 kb on - strand, within HGI48_RS13290at 2910.946 kb on + strand, within HGI48_RS13290at 2910.946 kb on + strandat 2910.947 kb on - strandat 2910.988 kb on + strand, within HGI48_RS13290at 2910.989 kb on - strand, within HGI48_RS13290at 2911.112 kb on + strand, within HGI48_RS13290at 2911.113 kb on - strand, within HGI48_RS13290at 2911.113 kb on - strand, within HGI48_RS13290at 2911.169 kb on + strand, within HGI48_RS13290at 2911.177 kb on + strand, within HGI48_RS13290at 2911.178 kb on - strand, within HGI48_RS13290at 2911.178 kb on - strandat 2911.178 kb on - strand, within HGI48_RS13290at 2911.467 kb on + strandat 2911.467 kb on + strandat 2911.468 kb on - strandat 2911.468 kb on - strandat 2911.518 kb on + strandat 2911.518 kb on + strandat 2911.519 kb on - strandat 2911.519 kb on - strandat 2911.519 kb on - strandat 2911.646 kb on + strandat 2911.646 kb on + strandat 2911.647 kb on - strandat 2911.929 kb on - strand, within HGI48_RS13295at 2911.981 kb on + strandat 2912.326 kb on + strand, within HGI48_RS13295at 2912.327 kb on - strand, within HGI48_RS13295at 2912.327 kb on - strand, within HGI48_RS13295at 2912.339 kb on - strand, within HGI48_RS13295at 2912.501 kb on - strand, within HGI48_RS13295at 2912.523 kb on + strand, within HGI48_RS13295at 2912.524 kb on - strand, within HGI48_RS13295at 2912.679 kb on - strand, within HGI48_RS13295at 2912.679 kb on - strandat 2912.720 kb on - strand, within HGI48_RS13295at 2912.721 kb on + strand, within HGI48_RS13295at 2912.721 kb on + strand, within HGI48_RS13295at 2912.721 kb on + strand, within HGI48_RS13295at 2912.721 kb on + strand, within HGI48_RS13295at 2912.722 kb on - strand, within HGI48_RS13295at 2912.722 kb on - strand, within HGI48_RS13295at 2912.727 kb on + strand, within HGI48_RS13295at 2912.727 kb on + strand, within HGI48_RS13295at 2912.728 kb on - strand, within HGI48_RS13295at 2912.728 kb on - strand, within HGI48_RS13295at 2912.728 kb on - strandat 2912.728 kb on - strand, within HGI48_RS13295at 2912.792 kb on + strand, within HGI48_RS13295at 2912.806 kb on - strand, within HGI48_RS13295at 2912.908 kb on - strand, within HGI48_RS13295at 2913.038 kb on + strand, within HGI48_RS13295at 2913.039 kb on - strand, within HGI48_RS13295at 2913.091 kb on + strand, within HGI48_RS13295at 2913.185 kb on - strandat 2913.189 kb on - strandat 2913.189 kb on - strandat 2913.251 kb on - strandat 2913.253 kb on - strandat 2913.282 kb on - strandat 2913.485 kb on + strandat 2913.485 kb on + strandat 2913.485 kb on + strandat 2913.486 kb on - strandat 2913.486 kb on - strandat 2913.486 kb on - strandat 2913.486 kb on - strandat 2913.487 kb on + strandat 2913.487 kb on + strandat 2913.488 kb on - strandat 2913.554 kb on + strandat 2913.554 kb on + strandat 2913.555 kb on - strandat 2913.577 kb on + strandat 2913.578 kb on - strandat 2913.578 kb on - strandat 2913.667 kb on - strandat 2913.777 kb on + strandat 2913.789 kb on + strandat 2913.790 kb on - strandat 2913.925 kb on - strandat 2913.925 kb on - strandat 2914.024 kb on + strandat 2914.040 kb on + strandat 2914.068 kb on + strandat 2914.070 kb on + strandat 2914.070 kb on + strandat 2914.116 kb on - strandat 2914.155 kb on + strandat 2914.155 kb on + strandat 2914.169 kb on + strandat 2914.170 kb on - strandat 2914.170 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PDB
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2,910,667 + HGI48_RS13290 0.47 -0.3
2,910,715 + +0.5
2,910,825 - HGI48_RS13290 0.57 +1.4
2,910,825 - HGI48_RS13290 0.57 -3.0
2,910,855 - +1.8
2,910,868 + HGI48_RS13290 0.60 +0.1
2,910,868 + -1.1
2,910,868 + HGI48_RS13290 0.60 +1.1
2,910,868 + HGI48_RS13290 0.60 -0.4
2,910,868 + HGI48_RS13290 0.60 +0.2
2,910,868 + HGI48_RS13290 0.60 -2.3
2,910,868 + HGI48_RS13290 0.60 +1.8
2,910,869 - HGI48_RS13290 0.60 +0.7
2,910,946 + HGI48_RS13290 0.65 -0.2
2,910,946 + -0.1
2,910,947 - +0.9
2,910,988 + HGI48_RS13290 0.68 -2.7
2,910,989 - HGI48_RS13290 0.68 -2.3
2,911,112 + HGI48_RS13290 0.76 +0.2
2,911,113 - HGI48_RS13290 0.76 -0.8
2,911,113 - HGI48_RS13290 0.76 +0.5
2,911,169 + HGI48_RS13290 0.80 +1.2
2,911,177 + HGI48_RS13290 0.81 +0.1
2,911,178 - HGI48_RS13290 0.81 +1.1
2,911,178 - +2.5
2,911,178 - HGI48_RS13290 0.81 +0.5
2,911,467 + +1.9
2,911,467 + +1.1
2,911,468 - -1.0
2,911,468 - -2.5
2,911,518 + +0.9
2,911,518 + -1.8
2,911,519 - +0.2
2,911,519 - +0.3
2,911,519 - -0.2
2,911,646 + +0.4
2,911,646 + +0.0
2,911,647 - -0.3
2,911,929 - HGI48_RS13295 0.19 +0.8
2,911,981 + +1.5
2,912,326 + HGI48_RS13295 0.43 +1.0
2,912,327 - HGI48_RS13295 0.43 -2.3
2,912,327 - HGI48_RS13295 0.43 -1.3
2,912,339 - HGI48_RS13295 0.43 -2.1
2,912,501 - HGI48_RS13295 0.53 -0.1
2,912,523 + HGI48_RS13295 0.54 -1.0
2,912,524 - HGI48_RS13295 0.55 -0.5
2,912,679 - HGI48_RS13295 0.64 -1.8
2,912,679 - +0.9
2,912,720 - HGI48_RS13295 0.66 -1.8
2,912,721 + HGI48_RS13295 0.66 -0.8
2,912,721 + HGI48_RS13295 0.66 -1.6
2,912,721 + HGI48_RS13295 0.66 -1.8
2,912,721 + HGI48_RS13295 0.66 -0.5
2,912,722 - HGI48_RS13295 0.66 -1.1
2,912,722 - HGI48_RS13295 0.66 -0.5
2,912,727 + HGI48_RS13295 0.67 -1.7
2,912,727 + HGI48_RS13295 0.67 -2.3
2,912,728 - HGI48_RS13295 0.67 -0.1
2,912,728 - HGI48_RS13295 0.67 -1.6
2,912,728 - -0.5
2,912,728 - HGI48_RS13295 0.67 -0.1
2,912,792 + HGI48_RS13295 0.71 -0.2
2,912,806 - HGI48_RS13295 0.71 -0.9
2,912,908 - HGI48_RS13295 0.78 -1.8
2,913,038 + HGI48_RS13295 0.85 +0.5
2,913,039 - HGI48_RS13295 0.85 -1.3
2,913,091 + HGI48_RS13295 0.89 +0.1
2,913,185 - -1.1
2,913,189 - +1.6
2,913,189 - -0.0
2,913,251 - +0.9
2,913,253 - +0.5
2,913,282 - -1.1
2,913,485 + -0.6
2,913,485 + -0.7
2,913,485 + -1.8
2,913,486 - -1.8
2,913,486 - -0.0
2,913,486 - -2.1
2,913,486 - -0.5
2,913,487 + -0.2
2,913,487 + -0.4
2,913,488 - -0.5
2,913,554 + -1.1
2,913,554 + -1.4
2,913,555 - -0.2
2,913,577 + -0.6
2,913,578 - -1.8
2,913,578 - -0.5
2,913,667 - -0.2
2,913,777 + -0.4
2,913,789 + +0.7
2,913,790 - -1.5
2,913,925 - -0.2
2,913,925 - +1.7
2,914,024 + -2.5
2,914,040 + +0.1
2,914,068 + -2.8
2,914,070 + -0.6
2,914,070 + +0.7
2,914,116 - -0.5
2,914,155 + -0.8
2,914,155 + -0.5
2,914,169 + +0.5
2,914,170 - +1.1
2,914,170 - +0.4

Or see this region's nucleotide sequence