Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS13290 and HGI48_RS13295 are separated by 146 nucleotides
HGI48_RS13290: HGI48_RS13290 - PepSY domain-containing protein, at 2,909,967 to 2,911,469
_RS13290
HGI48_RS13295: HGI48_RS13295 - MCP four helix bundle domain-containing protein, at 2,911,616 to 2,913,280
_RS13295
Position (kb)
2911
2912
2913
2914 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2910.667 kb on + strand, within HGI48_RS13290 at 2910.715 kb on + strand at 2910.825 kb on - strand, within HGI48_RS13290 at 2910.825 kb on - strand, within HGI48_RS13290 at 2910.855 kb on - strand at 2910.868 kb on + strand, within HGI48_RS13290 at 2910.868 kb on + strand at 2910.868 kb on + strand, within HGI48_RS13290 at 2910.868 kb on + strand, within HGI48_RS13290 at 2910.868 kb on + strand, within HGI48_RS13290 at 2910.868 kb on + strand, within HGI48_RS13290 at 2910.868 kb on + strand, within HGI48_RS13290 at 2910.869 kb on - strand, within HGI48_RS13290 at 2910.946 kb on + strand, within HGI48_RS13290 at 2910.946 kb on + strand at 2910.947 kb on - strand at 2910.988 kb on + strand, within HGI48_RS13290 at 2910.989 kb on - strand, within HGI48_RS13290 at 2911.112 kb on + strand, within HGI48_RS13290 at 2911.113 kb on - strand, within HGI48_RS13290 at 2911.113 kb on - strand, within HGI48_RS13290 at 2911.169 kb on + strand, within HGI48_RS13290 at 2911.177 kb on + strand, within HGI48_RS13290 at 2911.178 kb on - strand, within HGI48_RS13290 at 2911.178 kb on - strand at 2911.178 kb on - strand, within HGI48_RS13290 at 2911.467 kb on + strand at 2911.467 kb on + strand at 2911.468 kb on - strand at 2911.468 kb on - strand at 2911.518 kb on + strand at 2911.518 kb on + strand at 2911.519 kb on - strand at 2911.519 kb on - strand at 2911.519 kb on - strand at 2911.646 kb on + strand at 2911.646 kb on + strand at 2911.647 kb on - strand at 2911.929 kb on - strand, within HGI48_RS13295 at 2911.981 kb on + strand at 2912.326 kb on + strand, within HGI48_RS13295 at 2912.327 kb on - strand, within HGI48_RS13295 at 2912.327 kb on - strand, within HGI48_RS13295 at 2912.339 kb on - strand, within HGI48_RS13295 at 2912.501 kb on - strand, within HGI48_RS13295 at 2912.523 kb on + strand, within HGI48_RS13295 at 2912.524 kb on - strand, within HGI48_RS13295 at 2912.679 kb on - strand, within HGI48_RS13295 at 2912.679 kb on - strand at 2912.720 kb on - strand, within HGI48_RS13295 at 2912.721 kb on + strand, within HGI48_RS13295 at 2912.721 kb on + strand, within HGI48_RS13295 at 2912.721 kb on + strand, within HGI48_RS13295 at 2912.721 kb on + strand, within HGI48_RS13295 at 2912.722 kb on - strand, within HGI48_RS13295 at 2912.722 kb on - strand, within HGI48_RS13295 at 2912.727 kb on + strand, within HGI48_RS13295 at 2912.727 kb on + strand, within HGI48_RS13295 at 2912.728 kb on - strand, within HGI48_RS13295 at 2912.728 kb on - strand, within HGI48_RS13295 at 2912.728 kb on - strand at 2912.728 kb on - strand, within HGI48_RS13295 at 2912.792 kb on + strand, within HGI48_RS13295 at 2912.806 kb on - strand, within HGI48_RS13295 at 2912.908 kb on - strand, within HGI48_RS13295 at 2913.038 kb on + strand, within HGI48_RS13295 at 2913.039 kb on - strand, within HGI48_RS13295 at 2913.091 kb on + strand, within HGI48_RS13295 at 2913.185 kb on - strand at 2913.189 kb on - strand at 2913.189 kb on - strand at 2913.251 kb on - strand at 2913.253 kb on - strand at 2913.282 kb on - strand at 2913.485 kb on + strand at 2913.485 kb on + strand at 2913.485 kb on + strand at 2913.486 kb on - strand at 2913.486 kb on - strand at 2913.486 kb on - strand at 2913.486 kb on - strand at 2913.487 kb on + strand at 2913.487 kb on + strand at 2913.488 kb on - strand at 2913.554 kb on + strand at 2913.554 kb on + strand at 2913.555 kb on - strand at 2913.577 kb on + strand at 2913.578 kb on - strand at 2913.578 kb on - strand at 2913.667 kb on - strand at 2913.777 kb on + strand at 2913.789 kb on + strand at 2913.790 kb on - strand at 2913.925 kb on - strand at 2913.925 kb on - strand at 2914.024 kb on + strand at 2914.040 kb on + strand at 2914.068 kb on + strand at 2914.070 kb on + strand at 2914.070 kb on + strand at 2914.116 kb on - strand at 2914.155 kb on + strand at 2914.155 kb on + strand at 2914.169 kb on + strand at 2914.170 kb on - strand at 2914.170 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 2,910,667 + HGI48_RS13290 0.47 -0.3 2,910,715 + +0.5 2,910,825 - HGI48_RS13290 0.57 +1.4 2,910,825 - HGI48_RS13290 0.57 -3.0 2,910,855 - +1.8 2,910,868 + HGI48_RS13290 0.60 +0.1 2,910,868 + -1.1 2,910,868 + HGI48_RS13290 0.60 +1.1 2,910,868 + HGI48_RS13290 0.60 -0.4 2,910,868 + HGI48_RS13290 0.60 +0.2 2,910,868 + HGI48_RS13290 0.60 -2.3 2,910,868 + HGI48_RS13290 0.60 +1.8 2,910,869 - HGI48_RS13290 0.60 +0.7 2,910,946 + HGI48_RS13290 0.65 -0.2 2,910,946 + -0.1 2,910,947 - +0.9 2,910,988 + HGI48_RS13290 0.68 -2.7 2,910,989 - HGI48_RS13290 0.68 -2.3 2,911,112 + HGI48_RS13290 0.76 +0.2 2,911,113 - HGI48_RS13290 0.76 -0.8 2,911,113 - HGI48_RS13290 0.76 +0.5 2,911,169 + HGI48_RS13290 0.80 +1.2 2,911,177 + HGI48_RS13290 0.81 +0.1 2,911,178 - HGI48_RS13290 0.81 +1.1 2,911,178 - +2.5 2,911,178 - HGI48_RS13290 0.81 +0.5 2,911,467 + +1.9 2,911,467 + +1.1 2,911,468 - -1.0 2,911,468 - -2.5 2,911,518 + +0.9 2,911,518 + -1.8 2,911,519 - +0.2 2,911,519 - +0.3 2,911,519 - -0.2 2,911,646 + +0.4 2,911,646 + +0.0 2,911,647 - -0.3 2,911,929 - HGI48_RS13295 0.19 +0.8 2,911,981 + +1.5 2,912,326 + HGI48_RS13295 0.43 +1.0 2,912,327 - HGI48_RS13295 0.43 -2.3 2,912,327 - HGI48_RS13295 0.43 -1.3 2,912,339 - HGI48_RS13295 0.43 -2.1 2,912,501 - HGI48_RS13295 0.53 -0.1 2,912,523 + HGI48_RS13295 0.54 -1.0 2,912,524 - HGI48_RS13295 0.55 -0.5 2,912,679 - HGI48_RS13295 0.64 -1.8 2,912,679 - +0.9 2,912,720 - HGI48_RS13295 0.66 -1.8 2,912,721 + HGI48_RS13295 0.66 -0.8 2,912,721 + HGI48_RS13295 0.66 -1.6 2,912,721 + HGI48_RS13295 0.66 -1.8 2,912,721 + HGI48_RS13295 0.66 -0.5 2,912,722 - HGI48_RS13295 0.66 -1.1 2,912,722 - HGI48_RS13295 0.66 -0.5 2,912,727 + HGI48_RS13295 0.67 -1.7 2,912,727 + HGI48_RS13295 0.67 -2.3 2,912,728 - HGI48_RS13295 0.67 -0.1 2,912,728 - HGI48_RS13295 0.67 -1.6 2,912,728 - -0.5 2,912,728 - HGI48_RS13295 0.67 -0.1 2,912,792 + HGI48_RS13295 0.71 -0.2 2,912,806 - HGI48_RS13295 0.71 -0.9 2,912,908 - HGI48_RS13295 0.78 -1.8 2,913,038 + HGI48_RS13295 0.85 +0.5 2,913,039 - HGI48_RS13295 0.85 -1.3 2,913,091 + HGI48_RS13295 0.89 +0.1 2,913,185 - -1.1 2,913,189 - +1.6 2,913,189 - -0.0 2,913,251 - +0.9 2,913,253 - +0.5 2,913,282 - -1.1 2,913,485 + -0.6 2,913,485 + -0.7 2,913,485 + -1.8 2,913,486 - -1.8 2,913,486 - -0.0 2,913,486 - -2.1 2,913,486 - -0.5 2,913,487 + -0.2 2,913,487 + -0.4 2,913,488 - -0.5 2,913,554 + -1.1 2,913,554 + -1.4 2,913,555 - -0.2 2,913,577 + -0.6 2,913,578 - -1.8 2,913,578 - -0.5 2,913,667 - -0.2 2,913,777 + -0.4 2,913,789 + +0.7 2,913,790 - -1.5 2,913,925 - -0.2 2,913,925 - +1.7 2,914,024 + -2.5 2,914,040 + +0.1 2,914,068 + -2.8 2,914,070 + -0.6 2,914,070 + +0.7 2,914,116 - -0.5 2,914,155 + -0.8 2,914,155 + -0.5 2,914,169 + +0.5 2,914,170 - +1.1 2,914,170 - +0.4
Or see this region's nucleotide sequence