Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS12600

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,753,104	+		HGI48_RS12595	0.12	-2.2
2,753,104	+		HGI48_RS12595	0.12	-1.5
2,753,104	+		HGI48_RS12595	0.12	-1.0
2,753,104	+		HGI48_RS12595	0.12	-1.0
2,753,105	-		HGI48_RS12595	0.12	-1.4
2,753,105	-		HGI48_RS12595	0.12	-2.4
2,753,105	-		HGI48_RS12595	0.12	+0.4
2,753,105	-				+0.4
2,753,105	-		HGI48_RS12595	0.12	-0.6
2,753,276	+		HGI48_RS12595	0.32	+1.5
2,753,280	+		HGI48_RS12595	0.33	-0.6
2,753,296	+		HGI48_RS12595	0.35	-2.8
2,753,296	+		HGI48_RS12595	0.35	-0.2
2,753,297	-		HGI48_RS12595	0.35	-0.3
2,753,297	-		HGI48_RS12595	0.35	+1.1
2,753,297	-		HGI48_RS12595	0.35	+2.1
2,753,436	+		HGI48_RS12595	0.51	+0.0
2,753,436	+		HGI48_RS12595	0.51	+0.4
2,753,652	+		HGI48_RS12595	0.77	+1.9
2,753,653	-				+0.4
2,753,874	+				-0.9
2,753,924	+				-1.9
2,753,925	-				+0.4
2,753,936	+				+0.7
2,753,936	+				+0.8
2,753,937	-				-0.6
2,754,027	+				-1.2
2,754,027	+				-1.9
2,754,027	+				+0.1
2,754,027	+				+0.1
2,754,027	+				-1.2
2,754,028	-				+1.1
2,754,084	+				-3.2
2,754,752	+				-3.0
2,754,752	+				-0.6
2,754,752	+				-2.0
2,754,752	+				-0.5
2,754,752	+				+0.4
2,754,752	+				-2.8
2,754,753	-				-1.2
2,754,753	-				-2.2
2,754,753	-				-2.9
2,754,753	-				-0.1
2,754,757	-				-0.4
2,754,762	+				-0.4
2,754,763	-				-1.0
2,754,763	-				-2.4
2,754,767	+				+0.4
2,754,767	+				-1.6
2,754,767	+				+2.0
2,754,767	+				-0.0
2,754,767	+				-0.3
2,754,768	-				+0.7
2,754,768	-				+0.4
2,754,768	-				+1.4
2,754,768	-				+0.1
2,754,768	-				-1.9
2,754,770	+				-0.4
2,754,770	+				-1.3
2,754,833	+				-0.6
2,754,833	+				+1.0
2,754,833	+				-1.9
2,754,833	+				-1.9
2,754,833	+				-0.9
2,754,833	+				-0.9
2,754,834	-				-0.2
2,754,834	-				-0.3
2,754,834	-				+0.4
2,754,834	-				+0.1
2,754,834	-				+0.2
2,754,834	-				+0.8
2,754,834	-				-0.5
2,754,834	-				-0.9
2,754,836	+				-0.6
2,754,836	+				-2.9
2,754,836	+				-1.2
2,754,839	+				-0.1
2,754,950	+				+1.1
2,754,951	-		HGI48_RS12605	0.13	-0.3
2,754,975	+		HGI48_RS12605	0.15	+0.4
2,755,010	+		HGI48_RS12605	0.17	-0.2
2,755,010	+				-1.2
2,755,010	+		HGI48_RS12605	0.17	+1.0
2,755,011	-		HGI48_RS12605	0.17	-1.2
2,755,011	-		HGI48_RS12605	0.17	-1.4
2,755,080	+		HGI48_RS12605	0.21	-0.8
2,755,081	-		HGI48_RS12605	0.21	+0.1
2,755,193	+		HGI48_RS12605	0.28	-2.4
2,755,194	-		HGI48_RS12605	0.28	-1.6
2,755,194	-		HGI48_RS12605	0.28	-0.6
2,755,194	-		HGI48_RS12605	0.28	-1.7
2,755,229	+				-0.2
2,755,311	+				+1.7
2,755,311	+		HGI48_RS12605	0.35	-0.8
2,755,312	-		HGI48_RS12605	0.36	+0.2
2,755,337	+		HGI48_RS12605	0.37	-0.4
2,755,337	+		HGI48_RS12605	0.37	+0.4
2,755,337	+		HGI48_RS12605	0.37	+0.5
2,755,337	+				-1.2
2,755,337	+		HGI48_RS12605	0.37	-1.0
2,755,337	+				-0.2
2,755,338	-		HGI48_RS12605	0.37	+0.5
2,755,338	-		HGI48_RS12605	0.37	+0.7
2,755,338	-		HGI48_RS12605	0.37	-1.8
2,755,338	-				-1.2
2,755,338	-		HGI48_RS12605	0.37	+0.7
2,755,338	-		HGI48_RS12605	0.37	-0.4
2,755,338	-		HGI48_RS12605	0.37	+1.2
2,755,338	-		HGI48_RS12605	0.37	-3.0
2,755,338	-		HGI48_RS12605	0.37	-0.0
2,755,341	+		HGI48_RS12605	0.37	-0.6
2,755,341	+		HGI48_RS12605	0.37	-0.6
2,755,341	+		HGI48_RS12605	0.37	-0.4
2,755,341	+		HGI48_RS12605	0.37	+0.1
2,755,342	-		HGI48_RS12605	0.37	+0.4
2,755,342	-				-1.2
2,755,344	-		HGI48_RS12605	0.38	-2.8
2,755,344	-		HGI48_RS12605	0.38	+0.2
2,755,463	+		HGI48_RS12605	0.45	-0.0
2,755,464	-		HGI48_RS12605	0.45	-2.8
2,755,464	-		HGI48_RS12605	0.45	+0.9
2,755,467	+		HGI48_RS12605	0.45	-0.1
2,755,467	+		HGI48_RS12605	0.45	-0.8
2,755,467	+				+0.4
2,755,467	+		HGI48_RS12605	0.45	-1.2
2,755,468	-		HGI48_RS12605	0.45	-0.0
2,755,468	-		HGI48_RS12605	0.45	+1.1
2,755,468	-		HGI48_RS12605	0.45	+1.3
2,755,468	-		HGI48_RS12605	0.45	-0.6
2,755,468	-		HGI48_RS12605	0.45	-2.6
2,755,468	-		HGI48_RS12605	0.45	-1.7
2,755,468	-		HGI48_RS12605	0.45	-2.2
2,755,468	-		HGI48_RS12605	0.45	-0.4
2,755,468	-		HGI48_RS12605	0.45	-0.3
2,755,469	+		HGI48_RS12605	0.45	+0.6
2,755,469	+		HGI48_RS12605	0.45	-0.3
2,755,469	+		HGI48_RS12605	0.45	-1.6
2,755,469	+		HGI48_RS12605	0.45	-0.4
2,755,469	+		HGI48_RS12605	0.45	+0.4
2,755,469	+		HGI48_RS12605	0.45	-1.9
2,755,469	+		HGI48_RS12605	0.45	-0.3
2,755,469	+		HGI48_RS12605	0.45	+1.1
2,755,469	+		HGI48_RS12605	0.45	-1.0
2,755,470	-		HGI48_RS12605	0.45	-0.4
2,755,470	-		HGI48_RS12605	0.45	+0.4
2,755,470	-		HGI48_RS12605	0.45	-2.2
2,755,470	-		HGI48_RS12605	0.45	-0.0
2,755,470	-		HGI48_RS12605	0.45	-0.8
2,755,481	+		HGI48_RS12605	0.46	-1.2
2,755,482	-				+0.4
2,755,482	-		HGI48_RS12605	0.46	-1.0
2,755,496	-		HGI48_RS12605	0.47	-2.4
2,755,550	+		HGI48_RS12605	0.50	-1.8
2,755,550	+		HGI48_RS12605	0.50	+0.8
2,755,550	+		HGI48_RS12605	0.50	-0.2
2,755,550	+		HGI48_RS12605	0.50	-1.8
2,755,575	+		HGI48_RS12605	0.52	-1.6
2,755,578	-				+1.8
2,755,648	-		HGI48_RS12605	0.56	+0.8
2,755,655	+		HGI48_RS12605	0.57	-1.0
2,755,656	-		HGI48_RS12605	0.57	-0.2
2,755,659	+		HGI48_RS12605	0.57	-1.6
2,755,659	+				+1.1
2,755,660	-		HGI48_RS12605	0.57	+0.4
2,755,665	+		HGI48_RS12605	0.57	-0.9
2,755,680	+		HGI48_RS12605	0.58	+0.3
2,755,680	+		HGI48_RS12605	0.58	-0.2