Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS11915

Experiment: PDB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS11910 and HGI48_RS11915 are separated by 27 nucleotidesHGI48_RS11915 and HGI48_RS11920 are separated by 58 nucleotidesHGI48_RS11920 and HGI48_RS11925 are separated by 134 nucleotides HGI48_RS11910: HGI48_RS11910 - DUF1852 domain-containing protein, at 2,601,127 to 2,602,104 _RS11910 HGI48_RS11915: HGI48_RS11915 - methionine synthase, at 2,602,132 to 2,603,163 _RS11915 HGI48_RS11920: HGI48_RS11920 - glutamine amidotransferase, at 2,603,222 to 2,603,428 _RS11920 HGI48_RS11925: HGI48_RS11925 - alkyl/aryl-sulfatase, at 2,603,563 to 2,604,918 _RS11925 Position (kb) 2602 2603 2604Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2601.417 kb on + strand, within HGI48_RS11910at 2601.418 kb on - strand, within HGI48_RS11910at 2601.426 kb on + strand, within HGI48_RS11910at 2601.479 kb on - strand, within HGI48_RS11910at 2601.479 kb on - strand, within HGI48_RS11910at 2601.498 kb on + strand, within HGI48_RS11910at 2601.503 kb on + strand, within HGI48_RS11910at 2601.540 kb on + strand, within HGI48_RS11910at 2601.579 kb on - strandat 2601.638 kb on + strand, within HGI48_RS11910at 2601.639 kb on - strand, within HGI48_RS11910at 2601.667 kb on + strand, within HGI48_RS11910at 2601.668 kb on - strand, within HGI48_RS11910at 2601.827 kb on + strand, within HGI48_RS11910at 2601.827 kb on + strand, within HGI48_RS11910at 2601.828 kb on - strandat 2601.828 kb on - strand, within HGI48_RS11910at 2601.856 kb on - strand, within HGI48_RS11910at 2601.911 kb on - strand, within HGI48_RS11910at 2601.937 kb on + strand, within HGI48_RS11910at 2601.937 kb on + strand, within HGI48_RS11910at 2601.940 kb on + strand, within HGI48_RS11910at 2601.941 kb on - strand, within HGI48_RS11910at 2601.975 kb on - strand, within HGI48_RS11910at 2601.975 kb on - strand, within HGI48_RS11910at 2601.989 kb on - strand, within HGI48_RS11910at 2602.036 kb on - strandat 2602.069 kb on - strandat 2602.107 kb on - strandat 2602.107 kb on - strandat 2602.116 kb on + strandat 2602.116 kb on + strandat 2602.117 kb on - strandat 2602.117 kb on - strandat 2602.131 kb on + strandat 2602.296 kb on + strand, within HGI48_RS11915at 2602.296 kb on + strand, within HGI48_RS11915at 2602.296 kb on + strand, within HGI48_RS11915at 2602.299 kb on + strand, within HGI48_RS11915at 2602.299 kb on + strand, within HGI48_RS11915at 2602.299 kb on + strand, within HGI48_RS11915at 2602.300 kb on - strand, within HGI48_RS11915at 2602.300 kb on - strand, within HGI48_RS11915at 2602.300 kb on - strandat 2602.302 kb on + strand, within HGI48_RS11915at 2602.350 kb on + strand, within HGI48_RS11915at 2602.523 kb on + strand, within HGI48_RS11915at 2602.523 kb on + strand, within HGI48_RS11915at 2602.555 kb on + strand, within HGI48_RS11915at 2602.556 kb on - strand, within HGI48_RS11915at 2602.556 kb on - strand, within HGI48_RS11915at 2602.567 kb on + strand, within HGI48_RS11915at 2602.567 kb on + strand, within HGI48_RS11915at 2602.569 kb on + strand, within HGI48_RS11915at 2602.569 kb on + strand, within HGI48_RS11915at 2602.569 kb on + strand, within HGI48_RS11915at 2602.569 kb on + strandat 2602.570 kb on - strand, within HGI48_RS11915at 2602.678 kb on - strand, within HGI48_RS11915at 2602.678 kb on - strand, within HGI48_RS11915at 2602.678 kb on - strand, within HGI48_RS11915at 2602.678 kb on - strand, within HGI48_RS11915at 2602.760 kb on + strand, within HGI48_RS11915at 2602.764 kb on + strand, within HGI48_RS11915at 2602.764 kb on + strand, within HGI48_RS11915at 2602.764 kb on + strand, within HGI48_RS11915at 2602.765 kb on - strand, within HGI48_RS11915at 2602.765 kb on - strand, within HGI48_RS11915at 2602.765 kb on - strand, within HGI48_RS11915at 2602.765 kb on - strand, within HGI48_RS11915at 2602.765 kb on - strand, within HGI48_RS11915at 2602.765 kb on - strand, within HGI48_RS11915at 2602.777 kb on + strand, within HGI48_RS11915at 2602.834 kb on + strand, within HGI48_RS11915at 2602.896 kb on + strand, within HGI48_RS11915at 2602.978 kb on - strand, within HGI48_RS11915at 2603.007 kb on + strand, within HGI48_RS11915at 2603.007 kb on + strand, within HGI48_RS11915at 2603.008 kb on - strand, within HGI48_RS11915at 2603.008 kb on - strand, within HGI48_RS11915at 2603.051 kb on - strand, within HGI48_RS11915at 2603.117 kb on + strandat 2603.118 kb on - strandat 2603.118 kb on - strandat 2603.118 kb on - strandat 2603.186 kb on + strandat 2603.186 kb on + strandat 2603.187 kb on - strandat 2603.235 kb on - strandat 2603.239 kb on + strandat 2603.248 kb on - strand, within HGI48_RS11920at 2603.269 kb on - strand, within HGI48_RS11920at 2603.354 kb on + strand, within HGI48_RS11920at 2603.354 kb on + strand, within HGI48_RS11920at 2603.354 kb on + strand, within HGI48_RS11920at 2603.354 kb on + strand, within HGI48_RS11920at 2603.381 kb on - strand, within HGI48_RS11920at 2603.409 kb on - strandat 2603.409 kb on - strandat 2603.409 kb on - strandat 2603.409 kb on - strandat 2603.409 kb on - strandat 2603.410 kb on + strandat 2603.410 kb on + strandat 2603.410 kb on + strandat 2603.411 kb on - strandat 2603.411 kb on - strandat 2603.411 kb on - strandat 2603.427 kb on - strandat 2603.444 kb on + strandat 2603.445 kb on - strandat 2603.472 kb on - strandat 2603.472 kb on - strandat 2603.582 kb on + strandat 2603.604 kb on - strandat 2603.623 kb on - strandat 2603.679 kb on + strandat 2603.679 kb on + strandat 2603.835 kb on - strand, within HGI48_RS11925at 2603.838 kb on + strandat 2603.838 kb on + strand, within HGI48_RS11925at 2603.839 kb on - strand, within HGI48_RS11925at 2603.839 kb on - strand, within HGI48_RS11925at 2603.839 kb on - strand, within HGI48_RS11925at 2603.839 kb on - strand, within HGI48_RS11925at 2603.839 kb on - strand, within HGI48_RS11925at 2603.839 kb on - strand, within HGI48_RS11925at 2603.839 kb on - strand, within HGI48_RS11925at 2603.968 kb on + strandat 2603.988 kb on + strand, within HGI48_RS11925at 2603.988 kb on + strand, within HGI48_RS11925at 2603.988 kb on + strand, within HGI48_RS11925at 2603.988 kb on + strand, within HGI48_RS11925at 2603.988 kb on + strand, within HGI48_RS11925at 2603.988 kb on + strand, within HGI48_RS11925at 2603.988 kb on + strand, within HGI48_RS11925at 2603.989 kb on - strand, within HGI48_RS11925at 2603.989 kb on - strand, within HGI48_RS11925at 2603.989 kb on - strand, within HGI48_RS11925at 2603.989 kb on - strand, within HGI48_RS11925at 2603.989 kb on - strand, within HGI48_RS11925at 2603.989 kb on - strand, within HGI48_RS11925at 2604.030 kb on + strand, within HGI48_RS11925at 2604.030 kb on + strand, within HGI48_RS11925at 2604.030 kb on + strand, within HGI48_RS11925at 2604.030 kb on + strand, within HGI48_RS11925at 2604.030 kb on + strand, within HGI48_RS11925at 2604.031 kb on - strand, within HGI48_RS11925at 2604.031 kb on - strand, within HGI48_RS11925at 2604.031 kb on - strandat 2604.108 kb on + strandat 2604.108 kb on + strand, within HGI48_RS11925at 2604.108 kb on + strand, within HGI48_RS11925at 2604.108 kb on + strand, within HGI48_RS11925at 2604.108 kb on + strandat 2604.109 kb on - strand, within HGI48_RS11925at 2604.110 kb on + strand, within HGI48_RS11925at 2604.110 kb on + strand, within HGI48_RS11925at 2604.111 kb on - strand, within HGI48_RS11925at 2604.120 kb on + strand, within HGI48_RS11925

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Per-strain Table

Position Strand Gene LocusTag Fraction PDB
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2,601,417 + HGI48_RS11910 0.30 +0.4
2,601,418 - HGI48_RS11910 0.30 -1.4
2,601,426 + HGI48_RS11910 0.31 -0.3
2,601,479 - HGI48_RS11910 0.36 -1.9
2,601,479 - HGI48_RS11910 0.36 -0.9
2,601,498 + HGI48_RS11910 0.38 -0.5
2,601,503 + HGI48_RS11910 0.38 +0.2
2,601,540 + HGI48_RS11910 0.42 -0.6
2,601,579 - +1.4
2,601,638 + HGI48_RS11910 0.52 -0.4
2,601,639 - HGI48_RS11910 0.52 -0.2
2,601,667 + HGI48_RS11910 0.55 -0.1
2,601,668 - HGI48_RS11910 0.55 +0.7
2,601,827 + HGI48_RS11910 0.72 +0.6
2,601,827 + HGI48_RS11910 0.72 -0.1
2,601,828 - +0.4
2,601,828 - HGI48_RS11910 0.72 +1.2
2,601,856 - HGI48_RS11910 0.75 -0.3
2,601,911 - HGI48_RS11910 0.80 -1.3
2,601,937 + HGI48_RS11910 0.83 +0.1
2,601,937 + HGI48_RS11910 0.83 -1.9
2,601,940 + HGI48_RS11910 0.83 +0.4
2,601,941 - HGI48_RS11910 0.83 -0.6
2,601,975 - HGI48_RS11910 0.87 -1.9
2,601,975 - HGI48_RS11910 0.87 +0.4
2,601,989 - HGI48_RS11910 0.88 -2.4
2,602,036 - -1.2
2,602,069 - -1.5
2,602,107 - -0.6
2,602,107 - +1.4
2,602,116 + -0.2
2,602,116 + -0.5
2,602,117 - -0.3
2,602,117 - -0.2
2,602,131 + +0.1
2,602,296 + HGI48_RS11915 0.16 +1.0
2,602,296 + HGI48_RS11915 0.16 -0.2
2,602,296 + HGI48_RS11915 0.16 -0.0
2,602,299 + HGI48_RS11915 0.16 +0.4
2,602,299 + HGI48_RS11915 0.16 -0.9
2,602,299 + HGI48_RS11915 0.16 +1.1
2,602,300 - HGI48_RS11915 0.16 -0.8
2,602,300 - HGI48_RS11915 0.16 +1.7
2,602,300 - -0.6
2,602,302 + HGI48_RS11915 0.16 -2.2
2,602,350 + HGI48_RS11915 0.21 -0.8
2,602,523 + HGI48_RS11915 0.38 +1.2
2,602,523 + HGI48_RS11915 0.38 +0.6
2,602,555 + HGI48_RS11915 0.41 -0.3
2,602,556 - HGI48_RS11915 0.41 -1.6
2,602,556 - HGI48_RS11915 0.41 -0.9
2,602,567 + HGI48_RS11915 0.42 +0.1
2,602,567 + HGI48_RS11915 0.42 -0.0
2,602,569 + HGI48_RS11915 0.42 +0.4
2,602,569 + HGI48_RS11915 0.42 -2.6
2,602,569 + HGI48_RS11915 0.42 -1.3
2,602,569 + +0.4
2,602,570 - HGI48_RS11915 0.42 -1.0
2,602,678 - HGI48_RS11915 0.53 -1.0
2,602,678 - HGI48_RS11915 0.53 -1.2
2,602,678 - HGI48_RS11915 0.53 -0.7
2,602,678 - HGI48_RS11915 0.53 -2.8
2,602,760 + HGI48_RS11915 0.61 -1.4
2,602,764 + HGI48_RS11915 0.61 -1.2
2,602,764 + HGI48_RS11915 0.61 -0.6
2,602,764 + HGI48_RS11915 0.61 -1.6
2,602,765 - HGI48_RS11915 0.61 -2.6
2,602,765 - HGI48_RS11915 0.61 -0.2
2,602,765 - HGI48_RS11915 0.61 -2.4
2,602,765 - HGI48_RS11915 0.61 -2.4
2,602,765 - HGI48_RS11915 0.61 -1.6
2,602,765 - HGI48_RS11915 0.61 -1.0
2,602,777 + HGI48_RS11915 0.62 -0.5
2,602,834 + HGI48_RS11915 0.68 -1.6
2,602,896 + HGI48_RS11915 0.74 +0.2
2,602,978 - HGI48_RS11915 0.82 -1.6
2,603,007 + HGI48_RS11915 0.85 +0.1
2,603,007 + HGI48_RS11915 0.85 -1.6
2,603,008 - HGI48_RS11915 0.85 -1.4
2,603,008 - HGI48_RS11915 0.85 -2.2
2,603,051 - HGI48_RS11915 0.89 -2.2
2,603,117 + -2.6
2,603,118 - -1.6
2,603,118 - -1.8
2,603,118 - +0.6
2,603,186 + +0.2
2,603,186 + -0.4
2,603,187 - -1.2
2,603,235 - +1.4
2,603,239 + +0.3
2,603,248 - HGI48_RS11920 0.13 +0.9
2,603,269 - HGI48_RS11920 0.23 -0.6
2,603,354 + HGI48_RS11920 0.64 -0.4
2,603,354 + HGI48_RS11920 0.64 -1.6
2,603,354 + HGI48_RS11920 0.64 -0.2
2,603,354 + HGI48_RS11920 0.64 -0.6
2,603,381 - HGI48_RS11920 0.77 -0.3
2,603,409 - -1.2
2,603,409 - -0.2
2,603,409 - -1.4
2,603,409 - -1.6
2,603,409 - -0.0
2,603,410 + +0.4
2,603,410 + -1.0
2,603,410 + +0.3
2,603,411 - -0.4
2,603,411 - +2.1
2,603,411 - +0.1
2,603,427 - -0.1
2,603,444 + -1.9
2,603,445 - -0.6
2,603,472 - +1.0
2,603,472 - -1.4
2,603,582 + +1.4
2,603,604 - -2.2
2,603,623 - +0.4
2,603,679 + -0.1
2,603,679 + -3.3
2,603,835 - HGI48_RS11925 0.20 -0.0
2,603,838 + -1.2
2,603,838 + HGI48_RS11925 0.20 -0.6
2,603,839 - HGI48_RS11925 0.20 -1.2
2,603,839 - HGI48_RS11925 0.20 +0.3
2,603,839 - HGI48_RS11925 0.20 +1.6
2,603,839 - HGI48_RS11925 0.20 -1.0
2,603,839 - HGI48_RS11925 0.20 +2.2
2,603,839 - HGI48_RS11925 0.20 +1.9
2,603,839 - HGI48_RS11925 0.20 +1.0
2,603,968 + -0.6
2,603,988 + HGI48_RS11925 0.31 -0.6
2,603,988 + HGI48_RS11925 0.31 +1.1
2,603,988 + HGI48_RS11925 0.31 -1.6
2,603,988 + HGI48_RS11925 0.31 +1.1
2,603,988 + HGI48_RS11925 0.31 -0.6
2,603,988 + HGI48_RS11925 0.31 +0.1
2,603,988 + HGI48_RS11925 0.31 +0.9
2,603,989 - HGI48_RS11925 0.31 -0.7
2,603,989 - HGI48_RS11925 0.31 -0.6
2,603,989 - HGI48_RS11925 0.31 -1.2
2,603,989 - HGI48_RS11925 0.31 -1.3
2,603,989 - HGI48_RS11925 0.31 -0.9
2,603,989 - HGI48_RS11925 0.31 -2.1
2,604,030 + HGI48_RS11925 0.34 -2.9
2,604,030 + HGI48_RS11925 0.34 +0.1
2,604,030 + HGI48_RS11925 0.34 -0.0
2,604,030 + HGI48_RS11925 0.34 -1.2
2,604,030 + HGI48_RS11925 0.34 +1.0
2,604,031 - HGI48_RS11925 0.35 +0.9
2,604,031 - HGI48_RS11925 0.35 -0.5
2,604,031 - +0.4
2,604,108 + -0.2
2,604,108 + HGI48_RS11925 0.40 +0.4
2,604,108 + HGI48_RS11925 0.40 +0.0
2,604,108 + HGI48_RS11925 0.40 +0.4
2,604,108 + +0.4
2,604,109 - HGI48_RS11925 0.40 -1.2
2,604,110 + HGI48_RS11925 0.40 -3.2
2,604,110 + HGI48_RS11925 0.40 -1.4
2,604,111 - HGI48_RS11925 0.40 +0.4
2,604,120 + HGI48_RS11925 0.41 +0.4

Or see this region's nucleotide sequence