Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS11910 and HGI48_RS11915 are separated by 27 nucleotides HGI48_RS11915 and HGI48_RS11920 are separated by 58 nucleotides HGI48_RS11920 and HGI48_RS11925 are separated by 134 nucleotides
HGI48_RS11910: HGI48_RS11910 - DUF1852 domain-containing protein, at 2,601,127 to 2,602,104
_RS11910
HGI48_RS11915: HGI48_RS11915 - methionine synthase, at 2,602,132 to 2,603,163
_RS11915
HGI48_RS11920: HGI48_RS11920 - glutamine amidotransferase, at 2,603,222 to 2,603,428
_RS11920
HGI48_RS11925: HGI48_RS11925 - alkyl/aryl-sulfatase, at 2,603,563 to 2,604,918
_RS11925
Position (kb)
2602
2603
2604 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2601.417 kb on + strand, within HGI48_RS11910 at 2601.418 kb on - strand, within HGI48_RS11910 at 2601.426 kb on + strand, within HGI48_RS11910 at 2601.479 kb on - strand, within HGI48_RS11910 at 2601.479 kb on - strand, within HGI48_RS11910 at 2601.498 kb on + strand, within HGI48_RS11910 at 2601.503 kb on + strand, within HGI48_RS11910 at 2601.540 kb on + strand, within HGI48_RS11910 at 2601.579 kb on - strand at 2601.638 kb on + strand, within HGI48_RS11910 at 2601.639 kb on - strand, within HGI48_RS11910 at 2601.667 kb on + strand, within HGI48_RS11910 at 2601.668 kb on - strand, within HGI48_RS11910 at 2601.827 kb on + strand, within HGI48_RS11910 at 2601.827 kb on + strand, within HGI48_RS11910 at 2601.828 kb on - strand at 2601.828 kb on - strand, within HGI48_RS11910 at 2601.856 kb on - strand, within HGI48_RS11910 at 2601.911 kb on - strand, within HGI48_RS11910 at 2601.937 kb on + strand, within HGI48_RS11910 at 2601.937 kb on + strand, within HGI48_RS11910 at 2601.940 kb on + strand, within HGI48_RS11910 at 2601.941 kb on - strand, within HGI48_RS11910 at 2601.975 kb on - strand, within HGI48_RS11910 at 2601.975 kb on - strand, within HGI48_RS11910 at 2601.989 kb on - strand, within HGI48_RS11910 at 2602.036 kb on - strand at 2602.069 kb on - strand at 2602.107 kb on - strand at 2602.107 kb on - strand at 2602.116 kb on + strand at 2602.116 kb on + strand at 2602.117 kb on - strand at 2602.117 kb on - strand at 2602.131 kb on + strand at 2602.296 kb on + strand, within HGI48_RS11915 at 2602.296 kb on + strand, within HGI48_RS11915 at 2602.296 kb on + strand, within HGI48_RS11915 at 2602.299 kb on + strand, within HGI48_RS11915 at 2602.299 kb on + strand, within HGI48_RS11915 at 2602.299 kb on + strand, within HGI48_RS11915 at 2602.300 kb on - strand, within HGI48_RS11915 at 2602.300 kb on - strand, within HGI48_RS11915 at 2602.300 kb on - strand at 2602.302 kb on + strand, within HGI48_RS11915 at 2602.350 kb on + strand, within HGI48_RS11915 at 2602.523 kb on + strand, within HGI48_RS11915 at 2602.523 kb on + strand, within HGI48_RS11915 at 2602.555 kb on + strand, within HGI48_RS11915 at 2602.556 kb on - strand, within HGI48_RS11915 at 2602.556 kb on - strand, within HGI48_RS11915 at 2602.567 kb on + strand, within HGI48_RS11915 at 2602.567 kb on + strand, within HGI48_RS11915 at 2602.569 kb on + strand, within HGI48_RS11915 at 2602.569 kb on + strand, within HGI48_RS11915 at 2602.569 kb on + strand, within HGI48_RS11915 at 2602.569 kb on + strand at 2602.570 kb on - strand, within HGI48_RS11915 at 2602.678 kb on - strand, within HGI48_RS11915 at 2602.678 kb on - strand, within HGI48_RS11915 at 2602.678 kb on - strand, within HGI48_RS11915 at 2602.678 kb on - strand, within HGI48_RS11915 at 2602.760 kb on + strand, within HGI48_RS11915 at 2602.764 kb on + strand, within HGI48_RS11915 at 2602.764 kb on + strand, within HGI48_RS11915 at 2602.764 kb on + strand, within HGI48_RS11915 at 2602.765 kb on - strand, within HGI48_RS11915 at 2602.765 kb on - strand, within HGI48_RS11915 at 2602.765 kb on - strand, within HGI48_RS11915 at 2602.765 kb on - strand, within HGI48_RS11915 at 2602.765 kb on - strand, within HGI48_RS11915 at 2602.765 kb on - strand, within HGI48_RS11915 at 2602.777 kb on + strand, within HGI48_RS11915 at 2602.834 kb on + strand, within HGI48_RS11915 at 2602.896 kb on + strand, within HGI48_RS11915 at 2602.978 kb on - strand, within HGI48_RS11915 at 2603.007 kb on + strand, within HGI48_RS11915 at 2603.007 kb on + strand, within HGI48_RS11915 at 2603.008 kb on - strand, within HGI48_RS11915 at 2603.008 kb on - strand, within HGI48_RS11915 at 2603.051 kb on - strand, within HGI48_RS11915 at 2603.117 kb on + strand at 2603.118 kb on - strand at 2603.118 kb on - strand at 2603.118 kb on - strand at 2603.186 kb on + strand at 2603.186 kb on + strand at 2603.187 kb on - strand at 2603.235 kb on - strand at 2603.239 kb on + strand at 2603.248 kb on - strand, within HGI48_RS11920 at 2603.269 kb on - strand, within HGI48_RS11920 at 2603.354 kb on + strand, within HGI48_RS11920 at 2603.354 kb on + strand, within HGI48_RS11920 at 2603.354 kb on + strand, within HGI48_RS11920 at 2603.354 kb on + strand, within HGI48_RS11920 at 2603.381 kb on - strand, within HGI48_RS11920 at 2603.409 kb on - strand at 2603.409 kb on - strand at 2603.409 kb on - strand at 2603.409 kb on - strand at 2603.409 kb on - strand at 2603.410 kb on + strand at 2603.410 kb on + strand at 2603.410 kb on + strand at 2603.411 kb on - strand at 2603.411 kb on - strand at 2603.411 kb on - strand at 2603.427 kb on - strand at 2603.444 kb on + strand at 2603.445 kb on - strand at 2603.472 kb on - strand at 2603.472 kb on - strand at 2603.582 kb on + strand at 2603.604 kb on - strand at 2603.623 kb on - strand at 2603.679 kb on + strand at 2603.679 kb on + strand at 2603.835 kb on - strand, within HGI48_RS11925 at 2603.838 kb on + strand at 2603.838 kb on + strand, within HGI48_RS11925 at 2603.839 kb on - strand, within HGI48_RS11925 at 2603.839 kb on - strand, within HGI48_RS11925 at 2603.839 kb on - strand, within HGI48_RS11925 at 2603.839 kb on - strand, within HGI48_RS11925 at 2603.839 kb on - strand, within HGI48_RS11925 at 2603.839 kb on - strand, within HGI48_RS11925 at 2603.839 kb on - strand, within HGI48_RS11925 at 2603.968 kb on + strand at 2603.988 kb on + strand, within HGI48_RS11925 at 2603.988 kb on + strand, within HGI48_RS11925 at 2603.988 kb on + strand, within HGI48_RS11925 at 2603.988 kb on + strand, within HGI48_RS11925 at 2603.988 kb on + strand, within HGI48_RS11925 at 2603.988 kb on + strand, within HGI48_RS11925 at 2603.988 kb on + strand, within HGI48_RS11925 at 2603.989 kb on - strand, within HGI48_RS11925 at 2603.989 kb on - strand, within HGI48_RS11925 at 2603.989 kb on - strand, within HGI48_RS11925 at 2603.989 kb on - strand, within HGI48_RS11925 at 2603.989 kb on - strand, within HGI48_RS11925 at 2603.989 kb on - strand, within HGI48_RS11925 at 2604.030 kb on + strand, within HGI48_RS11925 at 2604.030 kb on + strand, within HGI48_RS11925 at 2604.030 kb on + strand, within HGI48_RS11925 at 2604.030 kb on + strand, within HGI48_RS11925 at 2604.030 kb on + strand, within HGI48_RS11925 at 2604.031 kb on - strand, within HGI48_RS11925 at 2604.031 kb on - strand, within HGI48_RS11925 at 2604.031 kb on - strand at 2604.108 kb on + strand at 2604.108 kb on + strand, within HGI48_RS11925 at 2604.108 kb on + strand, within HGI48_RS11925 at 2604.108 kb on + strand, within HGI48_RS11925 at 2604.108 kb on + strand at 2604.109 kb on - strand, within HGI48_RS11925 at 2604.110 kb on + strand, within HGI48_RS11925 at 2604.110 kb on + strand, within HGI48_RS11925 at 2604.111 kb on - strand, within HGI48_RS11925 at 2604.120 kb on + strand, within HGI48_RS11925
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 2,601,417 + HGI48_RS11910 0.30 +0.4 2,601,418 - HGI48_RS11910 0.30 -1.4 2,601,426 + HGI48_RS11910 0.31 -0.3 2,601,479 - HGI48_RS11910 0.36 -1.9 2,601,479 - HGI48_RS11910 0.36 -0.9 2,601,498 + HGI48_RS11910 0.38 -0.5 2,601,503 + HGI48_RS11910 0.38 +0.2 2,601,540 + HGI48_RS11910 0.42 -0.6 2,601,579 - +1.4 2,601,638 + HGI48_RS11910 0.52 -0.4 2,601,639 - HGI48_RS11910 0.52 -0.2 2,601,667 + HGI48_RS11910 0.55 -0.1 2,601,668 - HGI48_RS11910 0.55 +0.7 2,601,827 + HGI48_RS11910 0.72 +0.6 2,601,827 + HGI48_RS11910 0.72 -0.1 2,601,828 - +0.4 2,601,828 - HGI48_RS11910 0.72 +1.2 2,601,856 - HGI48_RS11910 0.75 -0.3 2,601,911 - HGI48_RS11910 0.80 -1.3 2,601,937 + HGI48_RS11910 0.83 +0.1 2,601,937 + HGI48_RS11910 0.83 -1.9 2,601,940 + HGI48_RS11910 0.83 +0.4 2,601,941 - HGI48_RS11910 0.83 -0.6 2,601,975 - HGI48_RS11910 0.87 -1.9 2,601,975 - HGI48_RS11910 0.87 +0.4 2,601,989 - HGI48_RS11910 0.88 -2.4 2,602,036 - -1.2 2,602,069 - -1.5 2,602,107 - -0.6 2,602,107 - +1.4 2,602,116 + -0.2 2,602,116 + -0.5 2,602,117 - -0.3 2,602,117 - -0.2 2,602,131 + +0.1 2,602,296 + HGI48_RS11915 0.16 +1.0 2,602,296 + HGI48_RS11915 0.16 -0.2 2,602,296 + HGI48_RS11915 0.16 -0.0 2,602,299 + HGI48_RS11915 0.16 +0.4 2,602,299 + HGI48_RS11915 0.16 -0.9 2,602,299 + HGI48_RS11915 0.16 +1.1 2,602,300 - HGI48_RS11915 0.16 -0.8 2,602,300 - HGI48_RS11915 0.16 +1.7 2,602,300 - -0.6 2,602,302 + HGI48_RS11915 0.16 -2.2 2,602,350 + HGI48_RS11915 0.21 -0.8 2,602,523 + HGI48_RS11915 0.38 +1.2 2,602,523 + HGI48_RS11915 0.38 +0.6 2,602,555 + HGI48_RS11915 0.41 -0.3 2,602,556 - HGI48_RS11915 0.41 -1.6 2,602,556 - HGI48_RS11915 0.41 -0.9 2,602,567 + HGI48_RS11915 0.42 +0.1 2,602,567 + HGI48_RS11915 0.42 -0.0 2,602,569 + HGI48_RS11915 0.42 +0.4 2,602,569 + HGI48_RS11915 0.42 -2.6 2,602,569 + HGI48_RS11915 0.42 -1.3 2,602,569 + +0.4 2,602,570 - HGI48_RS11915 0.42 -1.0 2,602,678 - HGI48_RS11915 0.53 -1.0 2,602,678 - HGI48_RS11915 0.53 -1.2 2,602,678 - HGI48_RS11915 0.53 -0.7 2,602,678 - HGI48_RS11915 0.53 -2.8 2,602,760 + HGI48_RS11915 0.61 -1.4 2,602,764 + HGI48_RS11915 0.61 -1.2 2,602,764 + HGI48_RS11915 0.61 -0.6 2,602,764 + HGI48_RS11915 0.61 -1.6 2,602,765 - HGI48_RS11915 0.61 -2.6 2,602,765 - HGI48_RS11915 0.61 -0.2 2,602,765 - HGI48_RS11915 0.61 -2.4 2,602,765 - HGI48_RS11915 0.61 -2.4 2,602,765 - HGI48_RS11915 0.61 -1.6 2,602,765 - HGI48_RS11915 0.61 -1.0 2,602,777 + HGI48_RS11915 0.62 -0.5 2,602,834 + HGI48_RS11915 0.68 -1.6 2,602,896 + HGI48_RS11915 0.74 +0.2 2,602,978 - HGI48_RS11915 0.82 -1.6 2,603,007 + HGI48_RS11915 0.85 +0.1 2,603,007 + HGI48_RS11915 0.85 -1.6 2,603,008 - HGI48_RS11915 0.85 -1.4 2,603,008 - HGI48_RS11915 0.85 -2.2 2,603,051 - HGI48_RS11915 0.89 -2.2 2,603,117 + -2.6 2,603,118 - -1.6 2,603,118 - -1.8 2,603,118 - +0.6 2,603,186 + +0.2 2,603,186 + -0.4 2,603,187 - -1.2 2,603,235 - +1.4 2,603,239 + +0.3 2,603,248 - HGI48_RS11920 0.13 +0.9 2,603,269 - HGI48_RS11920 0.23 -0.6 2,603,354 + HGI48_RS11920 0.64 -0.4 2,603,354 + HGI48_RS11920 0.64 -1.6 2,603,354 + HGI48_RS11920 0.64 -0.2 2,603,354 + HGI48_RS11920 0.64 -0.6 2,603,381 - HGI48_RS11920 0.77 -0.3 2,603,409 - -1.2 2,603,409 - -0.2 2,603,409 - -1.4 2,603,409 - -1.6 2,603,409 - -0.0 2,603,410 + +0.4 2,603,410 + -1.0 2,603,410 + +0.3 2,603,411 - -0.4 2,603,411 - +2.1 2,603,411 - +0.1 2,603,427 - -0.1 2,603,444 + -1.9 2,603,445 - -0.6 2,603,472 - +1.0 2,603,472 - -1.4 2,603,582 + +1.4 2,603,604 - -2.2 2,603,623 - +0.4 2,603,679 + -0.1 2,603,679 + -3.3 2,603,835 - HGI48_RS11925 0.20 -0.0 2,603,838 + -1.2 2,603,838 + HGI48_RS11925 0.20 -0.6 2,603,839 - HGI48_RS11925 0.20 -1.2 2,603,839 - HGI48_RS11925 0.20 +0.3 2,603,839 - HGI48_RS11925 0.20 +1.6 2,603,839 - HGI48_RS11925 0.20 -1.0 2,603,839 - HGI48_RS11925 0.20 +2.2 2,603,839 - HGI48_RS11925 0.20 +1.9 2,603,839 - HGI48_RS11925 0.20 +1.0 2,603,968 + -0.6 2,603,988 + HGI48_RS11925 0.31 -0.6 2,603,988 + HGI48_RS11925 0.31 +1.1 2,603,988 + HGI48_RS11925 0.31 -1.6 2,603,988 + HGI48_RS11925 0.31 +1.1 2,603,988 + HGI48_RS11925 0.31 -0.6 2,603,988 + HGI48_RS11925 0.31 +0.1 2,603,988 + HGI48_RS11925 0.31 +0.9 2,603,989 - HGI48_RS11925 0.31 -0.7 2,603,989 - HGI48_RS11925 0.31 -0.6 2,603,989 - HGI48_RS11925 0.31 -1.2 2,603,989 - HGI48_RS11925 0.31 -1.3 2,603,989 - HGI48_RS11925 0.31 -0.9 2,603,989 - HGI48_RS11925 0.31 -2.1 2,604,030 + HGI48_RS11925 0.34 -2.9 2,604,030 + HGI48_RS11925 0.34 +0.1 2,604,030 + HGI48_RS11925 0.34 -0.0 2,604,030 + HGI48_RS11925 0.34 -1.2 2,604,030 + HGI48_RS11925 0.34 +1.0 2,604,031 - HGI48_RS11925 0.35 +0.9 2,604,031 - HGI48_RS11925 0.35 -0.5 2,604,031 - +0.4 2,604,108 + -0.2 2,604,108 + HGI48_RS11925 0.40 +0.4 2,604,108 + HGI48_RS11925 0.40 +0.0 2,604,108 + HGI48_RS11925 0.40 +0.4 2,604,108 + +0.4 2,604,109 - HGI48_RS11925 0.40 -1.2 2,604,110 + HGI48_RS11925 0.40 -3.2 2,604,110 + HGI48_RS11925 0.40 -1.4 2,604,111 - HGI48_RS11925 0.40 +0.4 2,604,120 + HGI48_RS11925 0.41 +0.4
Or see this region's nucleotide sequence