Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS11915

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,601,417	+		HGI48_RS11910	0.30	+0.4
2,601,418	-		HGI48_RS11910	0.30	-1.4
2,601,426	+		HGI48_RS11910	0.31	-0.3
2,601,479	-		HGI48_RS11910	0.36	-1.9
2,601,479	-		HGI48_RS11910	0.36	-0.9
2,601,498	+		HGI48_RS11910	0.38	-0.5
2,601,503	+		HGI48_RS11910	0.38	+0.2
2,601,540	+		HGI48_RS11910	0.42	-0.6
2,601,579	-				+1.4
2,601,638	+		HGI48_RS11910	0.52	-0.4
2,601,639	-		HGI48_RS11910	0.52	-0.2
2,601,667	+		HGI48_RS11910	0.55	-0.1
2,601,668	-		HGI48_RS11910	0.55	+0.7
2,601,827	+		HGI48_RS11910	0.72	+0.6
2,601,827	+		HGI48_RS11910	0.72	-0.1
2,601,828	-				+0.4
2,601,828	-		HGI48_RS11910	0.72	+1.2
2,601,856	-		HGI48_RS11910	0.75	-0.3
2,601,911	-		HGI48_RS11910	0.80	-1.3
2,601,937	+		HGI48_RS11910	0.83	+0.1
2,601,937	+		HGI48_RS11910	0.83	-1.9
2,601,940	+		HGI48_RS11910	0.83	+0.4
2,601,941	-		HGI48_RS11910	0.83	-0.6
2,601,975	-		HGI48_RS11910	0.87	-1.9
2,601,975	-		HGI48_RS11910	0.87	+0.4
2,601,989	-		HGI48_RS11910	0.88	-2.4
2,602,036	-				-1.2
2,602,069	-				-1.5
2,602,107	-				-0.6
2,602,107	-				+1.4
2,602,116	+				-0.2
2,602,116	+				-0.5
2,602,117	-				-0.3
2,602,117	-				-0.2
2,602,131	+				+0.1
2,602,296	+		HGI48_RS11915	0.16	+1.0
2,602,296	+		HGI48_RS11915	0.16	-0.2
2,602,296	+		HGI48_RS11915	0.16	-0.0
2,602,299	+		HGI48_RS11915	0.16	+0.4
2,602,299	+		HGI48_RS11915	0.16	-0.9
2,602,299	+		HGI48_RS11915	0.16	+1.1
2,602,300	-		HGI48_RS11915	0.16	-0.8
2,602,300	-		HGI48_RS11915	0.16	+1.7
2,602,300	-				-0.6
2,602,302	+		HGI48_RS11915	0.16	-2.2
2,602,350	+		HGI48_RS11915	0.21	-0.8
2,602,523	+		HGI48_RS11915	0.38	+1.2
2,602,523	+		HGI48_RS11915	0.38	+0.6
2,602,555	+		HGI48_RS11915	0.41	-0.3
2,602,556	-		HGI48_RS11915	0.41	-1.6
2,602,556	-		HGI48_RS11915	0.41	-0.9
2,602,567	+		HGI48_RS11915	0.42	+0.1
2,602,567	+		HGI48_RS11915	0.42	-0.0
2,602,569	+		HGI48_RS11915	0.42	+0.4
2,602,569	+		HGI48_RS11915	0.42	-2.6
2,602,569	+		HGI48_RS11915	0.42	-1.3
2,602,569	+				+0.4
2,602,570	-		HGI48_RS11915	0.42	-1.0
2,602,678	-		HGI48_RS11915	0.53	-1.0
2,602,678	-		HGI48_RS11915	0.53	-1.2
2,602,678	-		HGI48_RS11915	0.53	-0.7
2,602,678	-		HGI48_RS11915	0.53	-2.8
2,602,760	+		HGI48_RS11915	0.61	-1.4
2,602,764	+		HGI48_RS11915	0.61	-1.2
2,602,764	+		HGI48_RS11915	0.61	-0.6
2,602,764	+		HGI48_RS11915	0.61	-1.6
2,602,765	-		HGI48_RS11915	0.61	-2.6
2,602,765	-		HGI48_RS11915	0.61	-0.2
2,602,765	-		HGI48_RS11915	0.61	-2.4
2,602,765	-		HGI48_RS11915	0.61	-2.4
2,602,765	-		HGI48_RS11915	0.61	-1.6
2,602,765	-		HGI48_RS11915	0.61	-1.0
2,602,777	+		HGI48_RS11915	0.62	-0.5
2,602,834	+		HGI48_RS11915	0.68	-1.6
2,602,896	+		HGI48_RS11915	0.74	+0.2
2,602,978	-		HGI48_RS11915	0.82	-1.6
2,603,007	+		HGI48_RS11915	0.85	+0.1
2,603,007	+		HGI48_RS11915	0.85	-1.6
2,603,008	-		HGI48_RS11915	0.85	-1.4
2,603,008	-		HGI48_RS11915	0.85	-2.2
2,603,051	-		HGI48_RS11915	0.89	-2.2
2,603,117	+				-2.6
2,603,118	-				-1.6
2,603,118	-				-1.8
2,603,118	-				+0.6
2,603,186	+				+0.2
2,603,186	+				-0.4
2,603,187	-				-1.2
2,603,235	-				+1.4
2,603,239	+				+0.3
2,603,248	-		HGI48_RS11920	0.13	+0.9
2,603,269	-		HGI48_RS11920	0.23	-0.6
2,603,354	+		HGI48_RS11920	0.64	-0.4
2,603,354	+		HGI48_RS11920	0.64	-1.6
2,603,354	+		HGI48_RS11920	0.64	-0.2
2,603,354	+		HGI48_RS11920	0.64	-0.6
2,603,381	-		HGI48_RS11920	0.77	-0.3
2,603,409	-				-1.2
2,603,409	-				-0.2
2,603,409	-				-1.4
2,603,409	-				-1.6
2,603,409	-				-0.0
2,603,410	+				+0.4
2,603,410	+				-1.0
2,603,410	+				+0.3
2,603,411	-				-0.4
2,603,411	-				+2.1
2,603,411	-				+0.1
2,603,427	-				-0.1
2,603,444	+				-1.9
2,603,445	-				-0.6
2,603,472	-				+1.0
2,603,472	-				-1.4
2,603,582	+				+1.4
2,603,604	-				-2.2
2,603,623	-				+0.4
2,603,679	+				-0.1
2,603,679	+				-3.3
2,603,835	-		HGI48_RS11925	0.20	-0.0
2,603,838	+				-1.2
2,603,838	+		HGI48_RS11925	0.20	-0.6
2,603,839	-		HGI48_RS11925	0.20	-1.2
2,603,839	-		HGI48_RS11925	0.20	+0.3
2,603,839	-		HGI48_RS11925	0.20	+1.6
2,603,839	-		HGI48_RS11925	0.20	-1.0
2,603,839	-		HGI48_RS11925	0.20	+2.2
2,603,839	-		HGI48_RS11925	0.20	+1.9
2,603,839	-		HGI48_RS11925	0.20	+1.0
2,603,968	+				-0.6
2,603,988	+		HGI48_RS11925	0.31	-0.6
2,603,988	+		HGI48_RS11925	0.31	+1.1
2,603,988	+		HGI48_RS11925	0.31	-1.6
2,603,988	+		HGI48_RS11925	0.31	+1.1
2,603,988	+		HGI48_RS11925	0.31	-0.6
2,603,988	+		HGI48_RS11925	0.31	+0.1
2,603,988	+		HGI48_RS11925	0.31	+0.9
2,603,989	-		HGI48_RS11925	0.31	-0.7
2,603,989	-		HGI48_RS11925	0.31	-0.6
2,603,989	-		HGI48_RS11925	0.31	-1.2
2,603,989	-		HGI48_RS11925	0.31	-1.3
2,603,989	-		HGI48_RS11925	0.31	-0.9
2,603,989	-		HGI48_RS11925	0.31	-2.1
2,604,030	+		HGI48_RS11925	0.34	-2.9
2,604,030	+		HGI48_RS11925	0.34	+0.1
2,604,030	+		HGI48_RS11925	0.34	-0.0
2,604,030	+		HGI48_RS11925	0.34	-1.2
2,604,030	+		HGI48_RS11925	0.34	+1.0
2,604,031	-		HGI48_RS11925	0.35	+0.9
2,604,031	-		HGI48_RS11925	0.35	-0.5
2,604,031	-				+0.4
2,604,108	+				-0.2
2,604,108	+		HGI48_RS11925	0.40	+0.4
2,604,108	+		HGI48_RS11925	0.40	+0.0
2,604,108	+		HGI48_RS11925	0.40	+0.4
2,604,108	+				+0.4
2,604,109	-		HGI48_RS11925	0.40	-1.2
2,604,110	+		HGI48_RS11925	0.40	-3.2
2,604,110	+		HGI48_RS11925	0.40	-1.4
2,604,111	-		HGI48_RS11925	0.40	+0.4
2,604,120	+		HGI48_RS11925	0.41	+0.4