Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS11540 and HGI48_RS11545 are separated by 209 nucleotides HGI48_RS11545 and HGI48_RS11550 are separated by 24 nucleotides
HGI48_RS11540: HGI48_RS11540 - adenylosuccinate lyase, at 2,512,818 to 2,514,185
_RS11540
HGI48_RS11545: HGI48_RS11545 - two-component system response regulator PhoP, at 2,514,395 to 2,515,063
_RS11545
HGI48_RS11550: HGI48_RS11550 - two-component system sensor histidine kinase PhoQ, at 2,515,088 to 2,516,551
_RS11550
Position (kb)
2514
2515
2516 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2514.266 kb on + strand at 2514.295 kb on + strand at 2514.295 kb on + strand at 2514.295 kb on + strand at 2514.296 kb on - strand at 2514.296 kb on - strand at 2514.301 kb on + strand at 2514.301 kb on + strand at 2514.301 kb on + strand at 2514.302 kb on - strand at 2514.305 kb on + strand at 2514.305 kb on + strand at 2514.306 kb on - strand at 2514.312 kb on + strand at 2514.312 kb on + strand at 2514.313 kb on - strand at 2514.313 kb on - strand at 2514.313 kb on - strand at 2514.335 kb on - strand at 2514.343 kb on - strand at 2514.350 kb on + strand at 2514.418 kb on + strand at 2514.418 kb on + strand at 2514.419 kb on - strand at 2514.419 kb on - strand at 2514.507 kb on - strand, within HGI48_RS11545 at 2514.507 kb on - strand, within HGI48_RS11545 at 2514.538 kb on + strand, within HGI48_RS11545 at 2514.539 kb on - strand, within HGI48_RS11545 at 2514.686 kb on + strand, within HGI48_RS11545 at 2514.686 kb on + strand, within HGI48_RS11545 at 2514.686 kb on + strand, within HGI48_RS11545 at 2514.687 kb on - strand, within HGI48_RS11545 at 2514.857 kb on + strand, within HGI48_RS11545 at 2514.857 kb on + strand, within HGI48_RS11545 at 2514.858 kb on - strand, within HGI48_RS11545 at 2514.858 kb on - strand, within HGI48_RS11545 at 2515.061 kb on + strand at 2515.062 kb on - strand at 2515.066 kb on - strand at 2515.080 kb on - strand at 2515.096 kb on + strand at 2515.097 kb on - strand at 2515.097 kb on - strand at 2515.097 kb on - strand at 2515.098 kb on + strand at 2515.099 kb on - strand at 2515.203 kb on - strand at 2515.262 kb on + strand, within HGI48_RS11550 at 2515.263 kb on - strand, within HGI48_RS11550 at 2515.345 kb on + strand, within HGI48_RS11550 at 2515.345 kb on + strand, within HGI48_RS11550 at 2515.350 kb on - strand, within HGI48_RS11550 at 2515.350 kb on - strand, within HGI48_RS11550 at 2515.355 kb on - strand, within HGI48_RS11550 at 2515.480 kb on - strand, within HGI48_RS11550 at 2515.482 kb on + strand, within HGI48_RS11550 at 2515.482 kb on + strand, within HGI48_RS11550 at 2515.483 kb on - strand, within HGI48_RS11550 at 2515.483 kb on - strand, within HGI48_RS11550 at 2515.483 kb on - strand, within HGI48_RS11550 at 2515.483 kb on - strand, within HGI48_RS11550 at 2515.483 kb on - strand at 2515.483 kb on - strand, within HGI48_RS11550 at 2515.483 kb on - strand, within HGI48_RS11550 at 2515.523 kb on + strand, within HGI48_RS11550 at 2515.523 kb on + strand, within HGI48_RS11550 at 2515.558 kb on + strand, within HGI48_RS11550 at 2515.567 kb on + strand, within HGI48_RS11550 at 2515.617 kb on + strand, within HGI48_RS11550 at 2515.702 kb on - strand, within HGI48_RS11550 at 2515.767 kb on + strand, within HGI48_RS11550 at 2515.849 kb on + strand, within HGI48_RS11550 at 2515.850 kb on - strand, within HGI48_RS11550 at 2515.883 kb on - strand, within HGI48_RS11550 at 2515.883 kb on - strand, within HGI48_RS11550 at 2515.883 kb on - strand, within HGI48_RS11550 at 2515.883 kb on - strand at 2515.883 kb on - strand at 2516.049 kb on - strand, within HGI48_RS11550 at 2516.049 kb on - strand, within HGI48_RS11550
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 2,514,266 + -0.2 2,514,295 + -1.9 2,514,295 + +1.2 2,514,295 + +1.1 2,514,296 - +0.2 2,514,296 - +0.6 2,514,301 + +0.2 2,514,301 + -0.8 2,514,301 + +0.7 2,514,302 - -0.8 2,514,305 + +0.0 2,514,305 + -0.6 2,514,306 - -1.9 2,514,312 + -0.2 2,514,312 + +1.4 2,514,313 - +0.4 2,514,313 - +0.6 2,514,313 - +1.1 2,514,335 - -1.0 2,514,343 - -1.6 2,514,350 + +0.1 2,514,418 + +1.6 2,514,418 + +0.1 2,514,419 - -2.9 2,514,419 - +1.1 2,514,507 - HGI48_RS11545 0.17 -0.4 2,514,507 - HGI48_RS11545 0.17 -3.3 2,514,538 + HGI48_RS11545 0.21 -0.6 2,514,539 - HGI48_RS11545 0.22 +0.7 2,514,686 + HGI48_RS11545 0.43 -1.3 2,514,686 + HGI48_RS11545 0.43 -0.8 2,514,686 + HGI48_RS11545 0.43 -1.4 2,514,687 - HGI48_RS11545 0.44 +1.5 2,514,857 + HGI48_RS11545 0.69 -1.2 2,514,857 + HGI48_RS11545 0.69 -0.9 2,514,858 - HGI48_RS11545 0.69 -1.6 2,514,858 - HGI48_RS11545 0.69 -0.2 2,515,061 + +2.0 2,515,062 - +0.4 2,515,066 - -1.9 2,515,080 - -0.4 2,515,096 + -1.8 2,515,097 - -1.2 2,515,097 - +0.5 2,515,097 - +0.9 2,515,098 + -0.6 2,515,099 - -0.2 2,515,203 - -2.2 2,515,262 + HGI48_RS11550 0.12 +0.2 2,515,263 - HGI48_RS11550 0.12 +0.2 2,515,345 + HGI48_RS11550 0.18 -2.2 2,515,345 + HGI48_RS11550 0.18 -0.4 2,515,350 - HGI48_RS11550 0.18 -0.6 2,515,350 - HGI48_RS11550 0.18 +1.0 2,515,355 - HGI48_RS11550 0.18 -0.3 2,515,480 - HGI48_RS11550 0.27 -0.3 2,515,482 + HGI48_RS11550 0.27 -2.2 2,515,482 + HGI48_RS11550 0.27 +0.6 2,515,483 - HGI48_RS11550 0.27 +0.6 2,515,483 - HGI48_RS11550 0.27 -0.5 2,515,483 - HGI48_RS11550 0.27 -0.3 2,515,483 - HGI48_RS11550 0.27 -1.6 2,515,483 - +1.7 2,515,483 - HGI48_RS11550 0.27 +0.6 2,515,483 - HGI48_RS11550 0.27 +1.4 2,515,523 + HGI48_RS11550 0.30 +0.6 2,515,523 + HGI48_RS11550 0.30 +0.9 2,515,558 + HGI48_RS11550 0.32 +1.0 2,515,567 + HGI48_RS11550 0.33 -2.2 2,515,617 + HGI48_RS11550 0.36 +0.2 2,515,702 - HGI48_RS11550 0.42 +1.7 2,515,767 + HGI48_RS11550 0.46 -1.4 2,515,849 + HGI48_RS11550 0.52 +2.2 2,515,850 - HGI48_RS11550 0.52 -1.6 2,515,883 - HGI48_RS11550 0.54 -0.2 2,515,883 - HGI48_RS11550 0.54 -0.6 2,515,883 - HGI48_RS11550 0.54 -2.2 2,515,883 - -1.2 2,515,883 - +1.1 2,516,049 - HGI48_RS11550 0.66 +0.9 2,516,049 - HGI48_RS11550 0.66 +0.1
Or see this region's nucleotide sequence