Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS11545

Experiment: PDB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS11540 and HGI48_RS11545 are separated by 209 nucleotidesHGI48_RS11545 and HGI48_RS11550 are separated by 24 nucleotides HGI48_RS11540: HGI48_RS11540 - adenylosuccinate lyase, at 2,512,818 to 2,514,185 _RS11540 HGI48_RS11545: HGI48_RS11545 - two-component system response regulator PhoP, at 2,514,395 to 2,515,063 _RS11545 HGI48_RS11550: HGI48_RS11550 - two-component system sensor histidine kinase PhoQ, at 2,515,088 to 2,516,551 _RS11550 Position (kb) 2514 2515 2516Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2514.266 kb on + strandat 2514.295 kb on + strandat 2514.295 kb on + strandat 2514.295 kb on + strandat 2514.296 kb on - strandat 2514.296 kb on - strandat 2514.301 kb on + strandat 2514.301 kb on + strandat 2514.301 kb on + strandat 2514.302 kb on - strandat 2514.305 kb on + strandat 2514.305 kb on + strandat 2514.306 kb on - strandat 2514.312 kb on + strandat 2514.312 kb on + strandat 2514.313 kb on - strandat 2514.313 kb on - strandat 2514.313 kb on - strandat 2514.335 kb on - strandat 2514.343 kb on - strandat 2514.350 kb on + strandat 2514.418 kb on + strandat 2514.418 kb on + strandat 2514.419 kb on - strandat 2514.419 kb on - strandat 2514.507 kb on - strand, within HGI48_RS11545at 2514.507 kb on - strand, within HGI48_RS11545at 2514.538 kb on + strand, within HGI48_RS11545at 2514.539 kb on - strand, within HGI48_RS11545at 2514.686 kb on + strand, within HGI48_RS11545at 2514.686 kb on + strand, within HGI48_RS11545at 2514.686 kb on + strand, within HGI48_RS11545at 2514.687 kb on - strand, within HGI48_RS11545at 2514.857 kb on + strand, within HGI48_RS11545at 2514.857 kb on + strand, within HGI48_RS11545at 2514.858 kb on - strand, within HGI48_RS11545at 2514.858 kb on - strand, within HGI48_RS11545at 2515.061 kb on + strandat 2515.062 kb on - strandat 2515.066 kb on - strandat 2515.080 kb on - strandat 2515.096 kb on + strandat 2515.097 kb on - strandat 2515.097 kb on - strandat 2515.097 kb on - strandat 2515.098 kb on + strandat 2515.099 kb on - strandat 2515.203 kb on - strandat 2515.262 kb on + strand, within HGI48_RS11550at 2515.263 kb on - strand, within HGI48_RS11550at 2515.345 kb on + strand, within HGI48_RS11550at 2515.345 kb on + strand, within HGI48_RS11550at 2515.350 kb on - strand, within HGI48_RS11550at 2515.350 kb on - strand, within HGI48_RS11550at 2515.355 kb on - strand, within HGI48_RS11550at 2515.480 kb on - strand, within HGI48_RS11550at 2515.482 kb on + strand, within HGI48_RS11550at 2515.482 kb on + strand, within HGI48_RS11550at 2515.483 kb on - strand, within HGI48_RS11550at 2515.483 kb on - strand, within HGI48_RS11550at 2515.483 kb on - strand, within HGI48_RS11550at 2515.483 kb on - strand, within HGI48_RS11550at 2515.483 kb on - strandat 2515.483 kb on - strand, within HGI48_RS11550at 2515.483 kb on - strand, within HGI48_RS11550at 2515.523 kb on + strand, within HGI48_RS11550at 2515.523 kb on + strand, within HGI48_RS11550at 2515.558 kb on + strand, within HGI48_RS11550at 2515.567 kb on + strand, within HGI48_RS11550at 2515.617 kb on + strand, within HGI48_RS11550at 2515.702 kb on - strand, within HGI48_RS11550at 2515.767 kb on + strand, within HGI48_RS11550at 2515.849 kb on + strand, within HGI48_RS11550at 2515.850 kb on - strand, within HGI48_RS11550at 2515.883 kb on - strand, within HGI48_RS11550at 2515.883 kb on - strand, within HGI48_RS11550at 2515.883 kb on - strand, within HGI48_RS11550at 2515.883 kb on - strandat 2515.883 kb on - strandat 2516.049 kb on - strand, within HGI48_RS11550at 2516.049 kb on - strand, within HGI48_RS11550

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Per-strain Table

Position Strand Gene LocusTag Fraction PDB
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2,514,266 + -0.2
2,514,295 + -1.9
2,514,295 + +1.2
2,514,295 + +1.1
2,514,296 - +0.2
2,514,296 - +0.6
2,514,301 + +0.2
2,514,301 + -0.8
2,514,301 + +0.7
2,514,302 - -0.8
2,514,305 + +0.0
2,514,305 + -0.6
2,514,306 - -1.9
2,514,312 + -0.2
2,514,312 + +1.4
2,514,313 - +0.4
2,514,313 - +0.6
2,514,313 - +1.1
2,514,335 - -1.0
2,514,343 - -1.6
2,514,350 + +0.1
2,514,418 + +1.6
2,514,418 + +0.1
2,514,419 - -2.9
2,514,419 - +1.1
2,514,507 - HGI48_RS11545 0.17 -0.4
2,514,507 - HGI48_RS11545 0.17 -3.3
2,514,538 + HGI48_RS11545 0.21 -0.6
2,514,539 - HGI48_RS11545 0.22 +0.7
2,514,686 + HGI48_RS11545 0.43 -1.3
2,514,686 + HGI48_RS11545 0.43 -0.8
2,514,686 + HGI48_RS11545 0.43 -1.4
2,514,687 - HGI48_RS11545 0.44 +1.5
2,514,857 + HGI48_RS11545 0.69 -1.2
2,514,857 + HGI48_RS11545 0.69 -0.9
2,514,858 - HGI48_RS11545 0.69 -1.6
2,514,858 - HGI48_RS11545 0.69 -0.2
2,515,061 + +2.0
2,515,062 - +0.4
2,515,066 - -1.9
2,515,080 - -0.4
2,515,096 + -1.8
2,515,097 - -1.2
2,515,097 - +0.5
2,515,097 - +0.9
2,515,098 + -0.6
2,515,099 - -0.2
2,515,203 - -2.2
2,515,262 + HGI48_RS11550 0.12 +0.2
2,515,263 - HGI48_RS11550 0.12 +0.2
2,515,345 + HGI48_RS11550 0.18 -2.2
2,515,345 + HGI48_RS11550 0.18 -0.4
2,515,350 - HGI48_RS11550 0.18 -0.6
2,515,350 - HGI48_RS11550 0.18 +1.0
2,515,355 - HGI48_RS11550 0.18 -0.3
2,515,480 - HGI48_RS11550 0.27 -0.3
2,515,482 + HGI48_RS11550 0.27 -2.2
2,515,482 + HGI48_RS11550 0.27 +0.6
2,515,483 - HGI48_RS11550 0.27 +0.6
2,515,483 - HGI48_RS11550 0.27 -0.5
2,515,483 - HGI48_RS11550 0.27 -0.3
2,515,483 - HGI48_RS11550 0.27 -1.6
2,515,483 - +1.7
2,515,483 - HGI48_RS11550 0.27 +0.6
2,515,483 - HGI48_RS11550 0.27 +1.4
2,515,523 + HGI48_RS11550 0.30 +0.6
2,515,523 + HGI48_RS11550 0.30 +0.9
2,515,558 + HGI48_RS11550 0.32 +1.0
2,515,567 + HGI48_RS11550 0.33 -2.2
2,515,617 + HGI48_RS11550 0.36 +0.2
2,515,702 - HGI48_RS11550 0.42 +1.7
2,515,767 + HGI48_RS11550 0.46 -1.4
2,515,849 + HGI48_RS11550 0.52 +2.2
2,515,850 - HGI48_RS11550 0.52 -1.6
2,515,883 - HGI48_RS11550 0.54 -0.2
2,515,883 - HGI48_RS11550 0.54 -0.6
2,515,883 - HGI48_RS11550 0.54 -2.2
2,515,883 - -1.2
2,515,883 - +1.1
2,516,049 - HGI48_RS11550 0.66 +0.9
2,516,049 - HGI48_RS11550 0.66 +0.1

Or see this region's nucleotide sequence