Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS10540 and HGI48_RS10545 are separated by 96 nucleotides HGI48_RS10545 and HGI48_RS10550 are separated by 1 nucleotides HGI48_RS10550 and HGI48_RS10555 overlap by 4 nucleotides HGI48_RS10555 and HGI48_RS10560 are separated by 9 nucleotides
HGI48_RS10540: HGI48_RS10540 - HTH-type transcriptional regulator CysB, at 2,274,663 to 2,275,637
_RS10540
HGI48_RS10545: HGI48_RS10545 - endonuclease III, at 2,275,734 to 2,276,369
_RS10545
HGI48_RS10550: HGI48_RS10550 - electron transport complex subunit E, at 2,276,371 to 2,277,075
_RS10550
HGI48_RS10555: HGI48_RS10555 - electron transport complex subunit RsxG, at 2,277,072 to 2,277,704
_RS10555
HGI48_RS10560: HGI48_RS10560 - electron transport complex subunit RsxD, at 2,277,714 to 2,278,766
_RS10560
Position (kb)
2276
2277
2278 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2275.461 kb on + strand, within HGI48_RS10540 at 2275.462 kb on - strand, within HGI48_RS10540 at 2275.463 kb on + strand, within HGI48_RS10540 at 2275.463 kb on + strand, within HGI48_RS10540 at 2275.463 kb on + strand, within HGI48_RS10540 at 2275.464 kb on - strand, within HGI48_RS10540 at 2275.464 kb on - strand, within HGI48_RS10540 at 2275.464 kb on - strand, within HGI48_RS10540 at 2275.505 kb on + strand at 2275.506 kb on - strand, within HGI48_RS10540 at 2275.506 kb on - strand, within HGI48_RS10540 at 2275.509 kb on + strand, within HGI48_RS10540 at 2275.509 kb on + strand, within HGI48_RS10540 at 2275.509 kb on + strand at 2275.509 kb on + strand, within HGI48_RS10540 at 2275.509 kb on + strand, within HGI48_RS10540 at 2275.509 kb on + strand at 2275.510 kb on - strand, within HGI48_RS10540 at 2275.511 kb on + strand, within HGI48_RS10540 at 2275.511 kb on + strand at 2275.511 kb on + strand, within HGI48_RS10540 at 2275.511 kb on + strand, within HGI48_RS10540 at 2275.511 kb on + strand, within HGI48_RS10540 at 2275.512 kb on - strand, within HGI48_RS10540 at 2275.512 kb on - strand, within HGI48_RS10540 at 2275.515 kb on + strand at 2275.516 kb on - strand, within HGI48_RS10540 at 2275.516 kb on - strand, within HGI48_RS10540 at 2275.635 kb on + strand at 2275.635 kb on + strand at 2275.636 kb on - strand at 2275.636 kb on - strand at 2275.719 kb on + strand at 2275.754 kb on + strand at 2275.754 kb on + strand at 2275.754 kb on + strand at 2275.757 kb on - strand at 2275.773 kb on + strand at 2275.814 kb on + strand, within HGI48_RS10545 at 2275.815 kb on - strand, within HGI48_RS10545 at 2275.815 kb on - strand, within HGI48_RS10545 at 2275.817 kb on - strand, within HGI48_RS10545 at 2275.817 kb on - strand, within HGI48_RS10545 at 2275.873 kb on + strand, within HGI48_RS10545 at 2275.874 kb on - strand at 2275.874 kb on - strand at 2276.013 kb on - strand, within HGI48_RS10545 at 2276.087 kb on + strand, within HGI48_RS10545 at 2276.087 kb on + strand, within HGI48_RS10545 at 2276.088 kb on - strand, within HGI48_RS10545 at 2276.088 kb on - strand, within HGI48_RS10545 at 2276.144 kb on + strand, within HGI48_RS10545 at 2276.145 kb on - strand, within HGI48_RS10545 at 2276.146 kb on + strand, within HGI48_RS10545 at 2276.146 kb on + strand, within HGI48_RS10545 at 2276.146 kb on + strand, within HGI48_RS10545 at 2276.146 kb on + strand, within HGI48_RS10545 at 2276.146 kb on + strand, within HGI48_RS10545 at 2276.147 kb on - strand, within HGI48_RS10545 at 2276.369 kb on + strand at 2276.370 kb on - strand at 2276.370 kb on - strand at 2276.370 kb on - strand at 2276.385 kb on + strand at 2276.386 kb on - strand at 2276.386 kb on - strand at 2276.386 kb on - strand at 2276.397 kb on + strand at 2276.801 kb on + strand, within HGI48_RS10550 at 2276.808 kb on - strand, within HGI48_RS10550 at 2276.862 kb on - strand, within HGI48_RS10550 at 2277.081 kb on - strand at 2277.081 kb on - strand at 2277.463 kb on + strand, within HGI48_RS10555 at 2277.464 kb on - strand, within HGI48_RS10555 at 2277.464 kb on - strand, within HGI48_RS10555 at 2277.511 kb on + strand, within HGI48_RS10555 at 2277.538 kb on + strand, within HGI48_RS10555 at 2277.538 kb on + strand, within HGI48_RS10555 at 2277.587 kb on + strand, within HGI48_RS10555 at 2277.817 kb on + strand at 2278.067 kb on + strand, within HGI48_RS10560
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 2,275,461 + HGI48_RS10540 0.82 -0.7 2,275,462 - HGI48_RS10540 0.82 +1.5 2,275,463 + HGI48_RS10540 0.82 +1.5 2,275,463 + HGI48_RS10540 0.82 +1.3 2,275,463 + HGI48_RS10540 0.82 +0.3 2,275,464 - HGI48_RS10540 0.82 +1.7 2,275,464 - HGI48_RS10540 0.82 +1.1 2,275,464 - HGI48_RS10540 0.82 +1.5 2,275,505 + +0.9 2,275,506 - HGI48_RS10540 0.86 +0.5 2,275,506 - HGI48_RS10540 0.86 +0.1 2,275,509 + HGI48_RS10540 0.87 -1.5 2,275,509 + HGI48_RS10540 0.87 +1.6 2,275,509 + +1.2 2,275,509 + HGI48_RS10540 0.87 +1.1 2,275,509 + HGI48_RS10540 0.87 +0.5 2,275,509 + +1.7 2,275,510 - HGI48_RS10540 0.87 +1.3 2,275,511 + HGI48_RS10540 0.87 +0.6 2,275,511 + +0.9 2,275,511 + HGI48_RS10540 0.87 -2.1 2,275,511 + HGI48_RS10540 0.87 +0.2 2,275,511 + HGI48_RS10540 0.87 +0.1 2,275,512 - HGI48_RS10540 0.87 +0.7 2,275,512 - HGI48_RS10540 0.87 -0.3 2,275,515 + +2.3 2,275,516 - HGI48_RS10540 0.87 +1.1 2,275,516 - HGI48_RS10540 0.87 +0.3 2,275,635 + -1.9 2,275,635 + -1.1 2,275,636 - +1.3 2,275,636 - +0.7 2,275,719 + -1.5 2,275,754 + +0.5 2,275,754 + +1.7 2,275,754 + -0.1 2,275,757 - -0.9 2,275,773 + -0.0 2,275,814 + HGI48_RS10545 0.13 -0.4 2,275,815 - HGI48_RS10545 0.13 +0.7 2,275,815 - HGI48_RS10545 0.13 +0.9 2,275,817 - HGI48_RS10545 0.13 -2.1 2,275,817 - HGI48_RS10545 0.13 +1.3 2,275,873 + HGI48_RS10545 0.22 -0.1 2,275,874 - -0.1 2,275,874 - -1.1 2,276,013 - HGI48_RS10545 0.44 -2.1 2,276,087 + HGI48_RS10545 0.56 -0.0 2,276,087 + HGI48_RS10545 0.56 +1.1 2,276,088 - HGI48_RS10545 0.56 +0.1 2,276,088 - HGI48_RS10545 0.56 -0.9 2,276,144 + HGI48_RS10545 0.64 -0.3 2,276,145 - HGI48_RS10545 0.65 -2.5 2,276,146 + HGI48_RS10545 0.65 -0.2 2,276,146 + HGI48_RS10545 0.65 -0.4 2,276,146 + HGI48_RS10545 0.65 -0.5 2,276,146 + HGI48_RS10545 0.65 -0.4 2,276,146 + HGI48_RS10545 0.65 +0.0 2,276,147 - HGI48_RS10545 0.65 -0.4 2,276,369 + -1.3 2,276,370 - +0.0 2,276,370 - +0.5 2,276,370 - +3.0 2,276,385 + -1.1 2,276,386 - -1.1 2,276,386 - -0.1 2,276,386 - -1.9 2,276,397 + +0.6 2,276,801 + HGI48_RS10550 0.61 -2.4 2,276,808 - HGI48_RS10550 0.62 -1.9 2,276,862 - HGI48_RS10550 0.70 -0.4 2,277,081 - -0.0 2,277,081 - -1.0 2,277,463 + HGI48_RS10555 0.62 +0.2 2,277,464 - HGI48_RS10555 0.62 -1.5 2,277,464 - HGI48_RS10555 0.62 -0.4 2,277,511 + HGI48_RS10555 0.69 -1.1 2,277,538 + HGI48_RS10555 0.74 -0.8 2,277,538 + HGI48_RS10555 0.74 -0.7 2,277,587 + HGI48_RS10555 0.81 -2.4 2,277,817 + +1.8 2,278,067 + HGI48_RS10560 0.34 +0.0
Or see this region's nucleotide sequence