Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS10550

Experiment: PDB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHGI48_RS10540 and HGI48_RS10545 are separated by 96 nucleotidesHGI48_RS10545 and HGI48_RS10550 are separated by 1 nucleotidesHGI48_RS10550 and HGI48_RS10555 overlap by 4 nucleotidesHGI48_RS10555 and HGI48_RS10560 are separated by 9 nucleotides HGI48_RS10540: HGI48_RS10540 - HTH-type transcriptional regulator CysB, at 2,274,663 to 2,275,637 _RS10540 HGI48_RS10545: HGI48_RS10545 - endonuclease III, at 2,275,734 to 2,276,369 _RS10545 HGI48_RS10550: HGI48_RS10550 - electron transport complex subunit E, at 2,276,371 to 2,277,075 _RS10550 HGI48_RS10555: HGI48_RS10555 - electron transport complex subunit RsxG, at 2,277,072 to 2,277,704 _RS10555 HGI48_RS10560: HGI48_RS10560 - electron transport complex subunit RsxD, at 2,277,714 to 2,278,766 _RS10560 Position (kb) 2276 2277 2278Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2275.461 kb on + strand, within HGI48_RS10540at 2275.462 kb on - strand, within HGI48_RS10540at 2275.463 kb on + strand, within HGI48_RS10540at 2275.463 kb on + strand, within HGI48_RS10540at 2275.463 kb on + strand, within HGI48_RS10540at 2275.464 kb on - strand, within HGI48_RS10540at 2275.464 kb on - strand, within HGI48_RS10540at 2275.464 kb on - strand, within HGI48_RS10540at 2275.505 kb on + strandat 2275.506 kb on - strand, within HGI48_RS10540at 2275.506 kb on - strand, within HGI48_RS10540at 2275.509 kb on + strand, within HGI48_RS10540at 2275.509 kb on + strand, within HGI48_RS10540at 2275.509 kb on + strandat 2275.509 kb on + strand, within HGI48_RS10540at 2275.509 kb on + strand, within HGI48_RS10540at 2275.509 kb on + strandat 2275.510 kb on - strand, within HGI48_RS10540at 2275.511 kb on + strand, within HGI48_RS10540at 2275.511 kb on + strandat 2275.511 kb on + strand, within HGI48_RS10540at 2275.511 kb on + strand, within HGI48_RS10540at 2275.511 kb on + strand, within HGI48_RS10540at 2275.512 kb on - strand, within HGI48_RS10540at 2275.512 kb on - strand, within HGI48_RS10540at 2275.515 kb on + strandat 2275.516 kb on - strand, within HGI48_RS10540at 2275.516 kb on - strand, within HGI48_RS10540at 2275.635 kb on + strandat 2275.635 kb on + strandat 2275.636 kb on - strandat 2275.636 kb on - strandat 2275.719 kb on + strandat 2275.754 kb on + strandat 2275.754 kb on + strandat 2275.754 kb on + strandat 2275.757 kb on - strandat 2275.773 kb on + strandat 2275.814 kb on + strand, within HGI48_RS10545at 2275.815 kb on - strand, within HGI48_RS10545at 2275.815 kb on - strand, within HGI48_RS10545at 2275.817 kb on - strand, within HGI48_RS10545at 2275.817 kb on - strand, within HGI48_RS10545at 2275.873 kb on + strand, within HGI48_RS10545at 2275.874 kb on - strandat 2275.874 kb on - strandat 2276.013 kb on - strand, within HGI48_RS10545at 2276.087 kb on + strand, within HGI48_RS10545at 2276.087 kb on + strand, within HGI48_RS10545at 2276.088 kb on - strand, within HGI48_RS10545at 2276.088 kb on - strand, within HGI48_RS10545at 2276.144 kb on + strand, within HGI48_RS10545at 2276.145 kb on - strand, within HGI48_RS10545at 2276.146 kb on + strand, within HGI48_RS10545at 2276.146 kb on + strand, within HGI48_RS10545at 2276.146 kb on + strand, within HGI48_RS10545at 2276.146 kb on + strand, within HGI48_RS10545at 2276.146 kb on + strand, within HGI48_RS10545at 2276.147 kb on - strand, within HGI48_RS10545at 2276.369 kb on + strandat 2276.370 kb on - strandat 2276.370 kb on - strandat 2276.370 kb on - strandat 2276.385 kb on + strandat 2276.386 kb on - strandat 2276.386 kb on - strandat 2276.386 kb on - strandat 2276.397 kb on + strandat 2276.801 kb on + strand, within HGI48_RS10550at 2276.808 kb on - strand, within HGI48_RS10550at 2276.862 kb on - strand, within HGI48_RS10550at 2277.081 kb on - strandat 2277.081 kb on - strandat 2277.463 kb on + strand, within HGI48_RS10555at 2277.464 kb on - strand, within HGI48_RS10555at 2277.464 kb on - strand, within HGI48_RS10555at 2277.511 kb on + strand, within HGI48_RS10555at 2277.538 kb on + strand, within HGI48_RS10555at 2277.538 kb on + strand, within HGI48_RS10555at 2277.587 kb on + strand, within HGI48_RS10555at 2277.817 kb on + strandat 2278.067 kb on + strand, within HGI48_RS10560

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PDB
remove
2,275,461 + HGI48_RS10540 0.82 -0.7
2,275,462 - HGI48_RS10540 0.82 +1.5
2,275,463 + HGI48_RS10540 0.82 +1.5
2,275,463 + HGI48_RS10540 0.82 +1.3
2,275,463 + HGI48_RS10540 0.82 +0.3
2,275,464 - HGI48_RS10540 0.82 +1.7
2,275,464 - HGI48_RS10540 0.82 +1.1
2,275,464 - HGI48_RS10540 0.82 +1.5
2,275,505 + +0.9
2,275,506 - HGI48_RS10540 0.86 +0.5
2,275,506 - HGI48_RS10540 0.86 +0.1
2,275,509 + HGI48_RS10540 0.87 -1.5
2,275,509 + HGI48_RS10540 0.87 +1.6
2,275,509 + +1.2
2,275,509 + HGI48_RS10540 0.87 +1.1
2,275,509 + HGI48_RS10540 0.87 +0.5
2,275,509 + +1.7
2,275,510 - HGI48_RS10540 0.87 +1.3
2,275,511 + HGI48_RS10540 0.87 +0.6
2,275,511 + +0.9
2,275,511 + HGI48_RS10540 0.87 -2.1
2,275,511 + HGI48_RS10540 0.87 +0.2
2,275,511 + HGI48_RS10540 0.87 +0.1
2,275,512 - HGI48_RS10540 0.87 +0.7
2,275,512 - HGI48_RS10540 0.87 -0.3
2,275,515 + +2.3
2,275,516 - HGI48_RS10540 0.87 +1.1
2,275,516 - HGI48_RS10540 0.87 +0.3
2,275,635 + -1.9
2,275,635 + -1.1
2,275,636 - +1.3
2,275,636 - +0.7
2,275,719 + -1.5
2,275,754 + +0.5
2,275,754 + +1.7
2,275,754 + -0.1
2,275,757 - -0.9
2,275,773 + -0.0
2,275,814 + HGI48_RS10545 0.13 -0.4
2,275,815 - HGI48_RS10545 0.13 +0.7
2,275,815 - HGI48_RS10545 0.13 +0.9
2,275,817 - HGI48_RS10545 0.13 -2.1
2,275,817 - HGI48_RS10545 0.13 +1.3
2,275,873 + HGI48_RS10545 0.22 -0.1
2,275,874 - -0.1
2,275,874 - -1.1
2,276,013 - HGI48_RS10545 0.44 -2.1
2,276,087 + HGI48_RS10545 0.56 -0.0
2,276,087 + HGI48_RS10545 0.56 +1.1
2,276,088 - HGI48_RS10545 0.56 +0.1
2,276,088 - HGI48_RS10545 0.56 -0.9
2,276,144 + HGI48_RS10545 0.64 -0.3
2,276,145 - HGI48_RS10545 0.65 -2.5
2,276,146 + HGI48_RS10545 0.65 -0.2
2,276,146 + HGI48_RS10545 0.65 -0.4
2,276,146 + HGI48_RS10545 0.65 -0.5
2,276,146 + HGI48_RS10545 0.65 -0.4
2,276,146 + HGI48_RS10545 0.65 +0.0
2,276,147 - HGI48_RS10545 0.65 -0.4
2,276,369 + -1.3
2,276,370 - +0.0
2,276,370 - +0.5
2,276,370 - +3.0
2,276,385 + -1.1
2,276,386 - -1.1
2,276,386 - -0.1
2,276,386 - -1.9
2,276,397 + +0.6
2,276,801 + HGI48_RS10550 0.61 -2.4
2,276,808 - HGI48_RS10550 0.62 -1.9
2,276,862 - HGI48_RS10550 0.70 -0.4
2,277,081 - -0.0
2,277,081 - -1.0
2,277,463 + HGI48_RS10555 0.62 +0.2
2,277,464 - HGI48_RS10555 0.62 -1.5
2,277,464 - HGI48_RS10555 0.62 -0.4
2,277,511 + HGI48_RS10555 0.69 -1.1
2,277,538 + HGI48_RS10555 0.74 -0.8
2,277,538 + HGI48_RS10555 0.74 -0.7
2,277,587 + HGI48_RS10555 0.81 -2.4
2,277,817 + +1.8
2,278,067 + HGI48_RS10560 0.34 +0.0

Or see this region's nucleotide sequence