Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS09215 and HGI48_RS09220 are separated by 1 nucleotides HGI48_RS09220 and HGI48_RS09225 overlap by 4 nucleotides
HGI48_RS09215: HGI48_RS09215 - microcin C ABC transporter ATP-binding protein YejF, at 1,976,883 to 1,978,475
_RS09215
HGI48_RS09220: HGI48_RS09220 - ABC transporter permease subunit, at 1,978,477 to 1,979,502
_RS09220
HGI48_RS09225: HGI48_RS09225 - microcin C ABC transporter permease YejB, at 1,979,499 to 1,980,590
_RS09225
Position (kb)
1978
1979
1980 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1977.552 kb on - strand, within HGI48_RS09215 at 1977.600 kb on + strand, within HGI48_RS09215 at 1977.600 kb on + strand, within HGI48_RS09215 at 1977.600 kb on + strand, within HGI48_RS09215 at 1977.600 kb on + strand, within HGI48_RS09215 at 1977.601 kb on - strand, within HGI48_RS09215 at 1978.276 kb on + strand, within HGI48_RS09215 at 1978.276 kb on + strand, within HGI48_RS09215 at 1978.458 kb on + strand at 1978.458 kb on + strand at 1978.458 kb on + strand at 1978.459 kb on - strand at 1978.459 kb on - strand at 1978.475 kb on + strand at 1978.475 kb on + strand at 1978.475 kb on + strand at 1978.476 kb on - strand at 1978.488 kb on + strand at 1978.530 kb on + strand at 1978.531 kb on - strand at 1978.712 kb on + strand, within HGI48_RS09220 at 1978.713 kb on - strand, within HGI48_RS09220 at 1978.713 kb on - strand, within HGI48_RS09220 at 1978.758 kb on + strand, within HGI48_RS09220 at 1978.758 kb on + strand, within HGI48_RS09220 at 1978.758 kb on + strand, within HGI48_RS09220 at 1978.758 kb on + strand, within HGI48_RS09220 at 1978.758 kb on + strand, within HGI48_RS09220 at 1978.759 kb on - strand, within HGI48_RS09220 at 1978.759 kb on - strand, within HGI48_RS09220 at 1978.759 kb on - strand, within HGI48_RS09220 at 1978.759 kb on - strand, within HGI48_RS09220 at 1978.801 kb on - strand, within HGI48_RS09220 at 1978.802 kb on + strand, within HGI48_RS09220 at 1978.803 kb on - strand at 1978.803 kb on - strand, within HGI48_RS09220 at 1978.803 kb on - strand, within HGI48_RS09220 at 1978.926 kb on + strand, within HGI48_RS09220 at 1978.936 kb on + strand, within HGI48_RS09220 at 1979.000 kb on + strand, within HGI48_RS09220 at 1979.000 kb on + strand, within HGI48_RS09220 at 1979.003 kb on + strand, within HGI48_RS09220 at 1979.091 kb on - strand at 1979.183 kb on + strand, within HGI48_RS09220 at 1979.187 kb on + strand, within HGI48_RS09220 at 1979.187 kb on + strand at 1979.187 kb on + strand, within HGI48_RS09220 at 1979.188 kb on - strand, within HGI48_RS09220 at 1979.188 kb on - strand at 1979.315 kb on + strand, within HGI48_RS09220 at 1979.336 kb on + strand, within HGI48_RS09220 at 1979.336 kb on + strand, within HGI48_RS09220 at 1979.336 kb on + strand at 1979.336 kb on + strand, within HGI48_RS09220 at 1979.337 kb on - strand, within HGI48_RS09220 at 1979.337 kb on - strand at 1979.352 kb on - strand, within HGI48_RS09220 at 1979.411 kb on - strand at 1979.411 kb on - strand at 1979.484 kb on + strand at 1979.540 kb on + strand at 1979.540 kb on + strand at 1979.541 kb on - strand at 1979.542 kb on + strand at 1979.542 kb on + strand at 1979.542 kb on + strand at 1979.543 kb on - strand at 1979.543 kb on - strand at 1979.562 kb on - strand at 1979.594 kb on - strand at 1979.763 kb on + strand, within HGI48_RS09225 at 1979.763 kb on + strand, within HGI48_RS09225 at 1979.764 kb on - strand, within HGI48_RS09225 at 1979.764 kb on - strand, within HGI48_RS09225 at 1979.821 kb on + strand, within HGI48_RS09225 at 1979.821 kb on + strand at 1979.821 kb on + strand, within HGI48_RS09225 at 1979.822 kb on - strand, within HGI48_RS09225 at 1979.822 kb on - strand, within HGI48_RS09225 at 1980.086 kb on + strand, within HGI48_RS09225 at 1980.086 kb on + strand, within HGI48_RS09225 at 1980.144 kb on - strand, within HGI48_RS09225 at 1980.144 kb on - strand, within HGI48_RS09225 at 1980.154 kb on + strand, within HGI48_RS09225 at 1980.154 kb on + strand at 1980.154 kb on + strand at 1980.155 kb on - strand, within HGI48_RS09225 at 1980.155 kb on - strand, within HGI48_RS09225 at 1980.200 kb on + strand, within HGI48_RS09225 at 1980.200 kb on + strand, within HGI48_RS09225 at 1980.201 kb on - strand, within HGI48_RS09225 at 1980.269 kb on - strand, within HGI48_RS09225 at 1980.374 kb on - strand, within HGI48_RS09225 at 1980.374 kb on - strand, within HGI48_RS09225
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 1,977,552 - HGI48_RS09215 0.42 -1.7 1,977,600 + HGI48_RS09215 0.45 -0.6 1,977,600 + HGI48_RS09215 0.45 +0.1 1,977,600 + HGI48_RS09215 0.45 -0.5 1,977,600 + HGI48_RS09215 0.45 -0.2 1,977,601 - HGI48_RS09215 0.45 +1.8 1,978,276 + HGI48_RS09215 0.87 -1.9 1,978,276 + HGI48_RS09215 0.87 -1.1 1,978,458 + -1.0 1,978,458 + -0.9 1,978,458 + -1.9 1,978,459 - +0.5 1,978,459 - -0.3 1,978,475 + +0.1 1,978,475 + -0.4 1,978,475 + -0.5 1,978,476 - -1.4 1,978,488 + -0.3 1,978,530 + +0.5 1,978,531 - +1.1 1,978,712 + HGI48_RS09220 0.23 -2.1 1,978,713 - HGI48_RS09220 0.23 +0.5 1,978,713 - HGI48_RS09220 0.23 -1.9 1,978,758 + HGI48_RS09220 0.27 -1.1 1,978,758 + HGI48_RS09220 0.27 -1.9 1,978,758 + HGI48_RS09220 0.27 -1.2 1,978,758 + HGI48_RS09220 0.27 -0.5 1,978,758 + HGI48_RS09220 0.27 -1.5 1,978,759 - HGI48_RS09220 0.27 -0.1 1,978,759 - HGI48_RS09220 0.27 -0.1 1,978,759 - HGI48_RS09220 0.27 +0.5 1,978,759 - HGI48_RS09220 0.27 +0.9 1,978,801 - HGI48_RS09220 0.32 +0.8 1,978,802 + HGI48_RS09220 0.32 -0.2 1,978,803 - +2.0 1,978,803 - HGI48_RS09220 0.32 -1.5 1,978,803 - HGI48_RS09220 0.32 -1.2 1,978,926 + HGI48_RS09220 0.44 -0.4 1,978,936 + HGI48_RS09220 0.45 -0.5 1,979,000 + HGI48_RS09220 0.51 -0.2 1,979,000 + HGI48_RS09220 0.51 -0.9 1,979,003 + HGI48_RS09220 0.51 +0.3 1,979,091 - +1.9 1,979,183 + HGI48_RS09220 0.69 -1.5 1,979,187 + HGI48_RS09220 0.69 -0.9 1,979,187 + -0.5 1,979,187 + HGI48_RS09220 0.69 -0.1 1,979,188 - HGI48_RS09220 0.69 -0.9 1,979,188 - -0.1 1,979,315 + HGI48_RS09220 0.82 -2.4 1,979,336 + HGI48_RS09220 0.84 -1.1 1,979,336 + HGI48_RS09220 0.84 -1.8 1,979,336 + -0.5 1,979,336 + HGI48_RS09220 0.84 -0.4 1,979,337 - HGI48_RS09220 0.84 -0.5 1,979,337 - -1.1 1,979,352 - HGI48_RS09220 0.85 -1.5 1,979,411 - -1.3 1,979,411 - -0.3 1,979,484 + -1.0 1,979,540 + -1.1 1,979,540 + +0.1 1,979,541 - -0.5 1,979,542 + +0.2 1,979,542 + -1.5 1,979,542 + -0.3 1,979,543 - +1.7 1,979,543 - -0.5 1,979,562 - +0.0 1,979,594 - -1.1 1,979,763 + HGI48_RS09225 0.24 +0.6 1,979,763 + HGI48_RS09225 0.24 -0.9 1,979,764 - HGI48_RS09225 0.24 -1.9 1,979,764 - HGI48_RS09225 0.24 +0.2 1,979,821 + HGI48_RS09225 0.29 -0.5 1,979,821 + -1.1 1,979,821 + HGI48_RS09225 0.29 -0.1 1,979,822 - HGI48_RS09225 0.30 +0.2 1,979,822 - HGI48_RS09225 0.30 +0.5 1,980,086 + HGI48_RS09225 0.54 -0.6 1,980,086 + HGI48_RS09225 0.54 -0.2 1,980,144 - HGI48_RS09225 0.59 -0.5 1,980,144 - HGI48_RS09225 0.59 -0.7 1,980,154 + HGI48_RS09225 0.60 -0.1 1,980,154 + +1.2 1,980,154 + -1.1 1,980,155 - HGI48_RS09225 0.60 -0.7 1,980,155 - HGI48_RS09225 0.60 -2.3 1,980,200 + HGI48_RS09225 0.64 +0.2 1,980,200 + HGI48_RS09225 0.64 -1.9 1,980,201 - HGI48_RS09225 0.64 -0.9 1,980,269 - HGI48_RS09225 0.71 -0.9 1,980,374 - HGI48_RS09225 0.80 -1.1 1,980,374 - HGI48_RS09225 0.80 -0.7
Or see this region's nucleotide sequence