Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS09220

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS09215 and HGI48_RS09220 are separated by 1 nucleotidesHGI48_RS09220 and HGI48_RS09225 overlap by 4 nucleotides HGI48_RS09215: HGI48_RS09215 - microcin C ABC transporter ATP-binding protein YejF, at 1,976,883 to 1,978,475 _RS09215 HGI48_RS09220: HGI48_RS09220 - ABC transporter permease subunit, at 1,978,477 to 1,979,502 _RS09220 HGI48_RS09225: HGI48_RS09225 - microcin C ABC transporter permease YejB, at 1,979,499 to 1,980,590 _RS09225 Position (kb) 1978 1979 1980Strain fitness (log2 ratio) -2 -1 0 1 2at 1977.552 kb on - strand, within HGI48_RS09215at 1977.600 kb on + strand, within HGI48_RS09215at 1977.600 kb on + strand, within HGI48_RS09215at 1977.600 kb on + strand, within HGI48_RS09215at 1977.600 kb on + strand, within HGI48_RS09215at 1977.601 kb on - strand, within HGI48_RS09215at 1978.276 kb on + strand, within HGI48_RS09215at 1978.276 kb on + strand, within HGI48_RS09215at 1978.458 kb on + strandat 1978.458 kb on + strandat 1978.458 kb on + strandat 1978.459 kb on - strandat 1978.459 kb on - strandat 1978.475 kb on + strandat 1978.475 kb on + strandat 1978.475 kb on + strandat 1978.476 kb on - strandat 1978.488 kb on + strandat 1978.530 kb on + strandat 1978.531 kb on - strandat 1978.712 kb on + strand, within HGI48_RS09220at 1978.713 kb on - strand, within HGI48_RS09220at 1978.713 kb on - strand, within HGI48_RS09220at 1978.758 kb on + strand, within HGI48_RS09220at 1978.758 kb on + strand, within HGI48_RS09220at 1978.758 kb on + strand, within HGI48_RS09220at 1978.758 kb on + strand, within HGI48_RS09220at 1978.758 kb on + strand, within HGI48_RS09220at 1978.759 kb on - strand, within HGI48_RS09220at 1978.759 kb on - strand, within HGI48_RS09220at 1978.759 kb on - strand, within HGI48_RS09220at 1978.759 kb on - strand, within HGI48_RS09220at 1978.801 kb on - strand, within HGI48_RS09220at 1978.802 kb on + strand, within HGI48_RS09220at 1978.803 kb on - strandat 1978.803 kb on - strand, within HGI48_RS09220at 1978.803 kb on - strand, within HGI48_RS09220at 1978.926 kb on + strand, within HGI48_RS09220at 1978.936 kb on + strand, within HGI48_RS09220at 1979.000 kb on + strand, within HGI48_RS09220at 1979.000 kb on + strand, within HGI48_RS09220at 1979.003 kb on + strand, within HGI48_RS09220at 1979.091 kb on - strandat 1979.183 kb on + strand, within HGI48_RS09220at 1979.187 kb on + strand, within HGI48_RS09220at 1979.187 kb on + strandat 1979.187 kb on + strand, within HGI48_RS09220at 1979.188 kb on - strand, within HGI48_RS09220at 1979.188 kb on - strandat 1979.315 kb on + strand, within HGI48_RS09220at 1979.336 kb on + strand, within HGI48_RS09220at 1979.336 kb on + strand, within HGI48_RS09220at 1979.336 kb on + strandat 1979.336 kb on + strand, within HGI48_RS09220at 1979.337 kb on - strand, within HGI48_RS09220at 1979.337 kb on - strandat 1979.352 kb on - strand, within HGI48_RS09220at 1979.411 kb on - strandat 1979.411 kb on - strandat 1979.484 kb on + strandat 1979.540 kb on + strandat 1979.540 kb on + strandat 1979.541 kb on - strandat 1979.542 kb on + strandat 1979.542 kb on + strandat 1979.542 kb on + strandat 1979.543 kb on - strandat 1979.543 kb on - strandat 1979.562 kb on - strandat 1979.594 kb on - strandat 1979.763 kb on + strand, within HGI48_RS09225at 1979.763 kb on + strand, within HGI48_RS09225at 1979.764 kb on - strand, within HGI48_RS09225at 1979.764 kb on - strand, within HGI48_RS09225at 1979.821 kb on + strand, within HGI48_RS09225at 1979.821 kb on + strandat 1979.821 kb on + strand, within HGI48_RS09225at 1979.822 kb on - strand, within HGI48_RS09225at 1979.822 kb on - strand, within HGI48_RS09225at 1980.086 kb on + strand, within HGI48_RS09225at 1980.086 kb on + strand, within HGI48_RS09225at 1980.144 kb on - strand, within HGI48_RS09225at 1980.144 kb on - strand, within HGI48_RS09225at 1980.154 kb on + strand, within HGI48_RS09225at 1980.154 kb on + strandat 1980.154 kb on + strandat 1980.155 kb on - strand, within HGI48_RS09225at 1980.155 kb on - strand, within HGI48_RS09225at 1980.200 kb on + strand, within HGI48_RS09225at 1980.200 kb on + strand, within HGI48_RS09225at 1980.201 kb on - strand, within HGI48_RS09225at 1980.269 kb on - strand, within HGI48_RS09225at 1980.374 kb on - strand, within HGI48_RS09225at 1980.374 kb on - strand, within HGI48_RS09225

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Per-strain Table

Position Strand Gene LocusTag Fraction PDB
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1,977,552 - HGI48_RS09215 0.42 -1.7
1,977,600 + HGI48_RS09215 0.45 -0.6
1,977,600 + HGI48_RS09215 0.45 +0.1
1,977,600 + HGI48_RS09215 0.45 -0.5
1,977,600 + HGI48_RS09215 0.45 -0.2
1,977,601 - HGI48_RS09215 0.45 +1.8
1,978,276 + HGI48_RS09215 0.87 -1.9
1,978,276 + HGI48_RS09215 0.87 -1.1
1,978,458 + -1.0
1,978,458 + -0.9
1,978,458 + -1.9
1,978,459 - +0.5
1,978,459 - -0.3
1,978,475 + +0.1
1,978,475 + -0.4
1,978,475 + -0.5
1,978,476 - -1.4
1,978,488 + -0.3
1,978,530 + +0.5
1,978,531 - +1.1
1,978,712 + HGI48_RS09220 0.23 -2.1
1,978,713 - HGI48_RS09220 0.23 +0.5
1,978,713 - HGI48_RS09220 0.23 -1.9
1,978,758 + HGI48_RS09220 0.27 -1.1
1,978,758 + HGI48_RS09220 0.27 -1.9
1,978,758 + HGI48_RS09220 0.27 -1.2
1,978,758 + HGI48_RS09220 0.27 -0.5
1,978,758 + HGI48_RS09220 0.27 -1.5
1,978,759 - HGI48_RS09220 0.27 -0.1
1,978,759 - HGI48_RS09220 0.27 -0.1
1,978,759 - HGI48_RS09220 0.27 +0.5
1,978,759 - HGI48_RS09220 0.27 +0.9
1,978,801 - HGI48_RS09220 0.32 +0.8
1,978,802 + HGI48_RS09220 0.32 -0.2
1,978,803 - +2.0
1,978,803 - HGI48_RS09220 0.32 -1.5
1,978,803 - HGI48_RS09220 0.32 -1.2
1,978,926 + HGI48_RS09220 0.44 -0.4
1,978,936 + HGI48_RS09220 0.45 -0.5
1,979,000 + HGI48_RS09220 0.51 -0.2
1,979,000 + HGI48_RS09220 0.51 -0.9
1,979,003 + HGI48_RS09220 0.51 +0.3
1,979,091 - +1.9
1,979,183 + HGI48_RS09220 0.69 -1.5
1,979,187 + HGI48_RS09220 0.69 -0.9
1,979,187 + -0.5
1,979,187 + HGI48_RS09220 0.69 -0.1
1,979,188 - HGI48_RS09220 0.69 -0.9
1,979,188 - -0.1
1,979,315 + HGI48_RS09220 0.82 -2.4
1,979,336 + HGI48_RS09220 0.84 -1.1
1,979,336 + HGI48_RS09220 0.84 -1.8
1,979,336 + -0.5
1,979,336 + HGI48_RS09220 0.84 -0.4
1,979,337 - HGI48_RS09220 0.84 -0.5
1,979,337 - -1.1
1,979,352 - HGI48_RS09220 0.85 -1.5
1,979,411 - -1.3
1,979,411 - -0.3
1,979,484 + -1.0
1,979,540 + -1.1
1,979,540 + +0.1
1,979,541 - -0.5
1,979,542 + +0.2
1,979,542 + -1.5
1,979,542 + -0.3
1,979,543 - +1.7
1,979,543 - -0.5
1,979,562 - +0.0
1,979,594 - -1.1
1,979,763 + HGI48_RS09225 0.24 +0.6
1,979,763 + HGI48_RS09225 0.24 -0.9
1,979,764 - HGI48_RS09225 0.24 -1.9
1,979,764 - HGI48_RS09225 0.24 +0.2
1,979,821 + HGI48_RS09225 0.29 -0.5
1,979,821 + -1.1
1,979,821 + HGI48_RS09225 0.29 -0.1
1,979,822 - HGI48_RS09225 0.30 +0.2
1,979,822 - HGI48_RS09225 0.30 +0.5
1,980,086 + HGI48_RS09225 0.54 -0.6
1,980,086 + HGI48_RS09225 0.54 -0.2
1,980,144 - HGI48_RS09225 0.59 -0.5
1,980,144 - HGI48_RS09225 0.59 -0.7
1,980,154 + HGI48_RS09225 0.60 -0.1
1,980,154 + +1.2
1,980,154 + -1.1
1,980,155 - HGI48_RS09225 0.60 -0.7
1,980,155 - HGI48_RS09225 0.60 -2.3
1,980,200 + HGI48_RS09225 0.64 +0.2
1,980,200 + HGI48_RS09225 0.64 -1.9
1,980,201 - HGI48_RS09225 0.64 -0.9
1,980,269 - HGI48_RS09225 0.71 -0.9
1,980,374 - HGI48_RS09225 0.80 -1.1
1,980,374 - HGI48_RS09225 0.80 -0.7

Or see this region's nucleotide sequence