Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS08900

Experiment: PDB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHGI48_RS08895 and HGI48_RS08900 are separated by 406 nucleotidesHGI48_RS08900 and HGI48_RS08905 are separated by 72 nucleotidesHGI48_RS08905 and HGI48_RS08910 are separated by 115 nucleotides HGI48_RS08895: HGI48_RS08895 - threonine/homoserine exporter RhtA, at 1,918,269 to 1,919,150 _RS08895 HGI48_RS08900: HGI48_RS08900 - outer membrane protein OmpX, at 1,919,557 to 1,920,069 _RS08900 HGI48_RS08905: HGI48_RS08905 - MarR family transcriptional regulator, at 1,920,142 to 1,920,636 _RS08905 HGI48_RS08910: HGI48_RS08910 - MFS transporter, at 1,920,752 to 1,921,933 _RS08910 Position (kb) 1919 1920 1921Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1918.583 kb on - strand, within HGI48_RS08895at 1918.583 kb on - strand, within HGI48_RS08895at 1918.583 kb on - strand, within HGI48_RS08895at 1918.596 kb on + strand, within HGI48_RS08895at 1918.661 kb on + strandat 1918.661 kb on + strand, within HGI48_RS08895at 1918.662 kb on - strand, within HGI48_RS08895at 1918.662 kb on - strand, within HGI48_RS08895at 1918.664 kb on - strand, within HGI48_RS08895at 1918.776 kb on + strand, within HGI48_RS08895at 1918.894 kb on + strand, within HGI48_RS08895at 1918.894 kb on + strand, within HGI48_RS08895at 1918.894 kb on + strand, within HGI48_RS08895at 1918.894 kb on + strand, within HGI48_RS08895at 1918.894 kb on + strand, within HGI48_RS08895at 1918.895 kb on - strand, within HGI48_RS08895at 1918.921 kb on + strand, within HGI48_RS08895at 1919.106 kb on + strandat 1919.106 kb on + strandat 1919.107 kb on - strandat 1919.107 kb on - strandat 1919.115 kb on + strandat 1919.131 kb on - strandat 1919.169 kb on + strandat 1919.169 kb on + strandat 1919.169 kb on + strandat 1919.169 kb on + strandat 1919.170 kb on - strandat 1919.170 kb on - strandat 1919.170 kb on - strandat 1919.188 kb on - strandat 1919.205 kb on + strandat 1919.206 kb on - strandat 1919.206 kb on - strandat 1919.206 kb on - strandat 1919.232 kb on - strandat 1919.254 kb on + strandat 1919.311 kb on - strandat 1919.557 kb on - strandat 1919.557 kb on - strandat 1919.639 kb on + strand, within HGI48_RS08900at 1919.639 kb on + strand, within HGI48_RS08900at 1919.639 kb on + strand, within HGI48_RS08900at 1919.640 kb on - strand, within HGI48_RS08900at 1919.708 kb on - strand, within HGI48_RS08900at 1919.755 kb on + strand, within HGI48_RS08900at 1919.755 kb on + strandat 1919.755 kb on + strand, within HGI48_RS08900at 1919.756 kb on - strand, within HGI48_RS08900at 1919.804 kb on - strand, within HGI48_RS08900at 1919.806 kb on + strand, within HGI48_RS08900at 1919.807 kb on - strand, within HGI48_RS08900at 1919.857 kb on + strand, within HGI48_RS08900at 1919.858 kb on - strand, within HGI48_RS08900at 1920.053 kb on + strandat 1920.054 kb on - strandat 1920.078 kb on + strandat 1920.175 kb on - strandat 1920.247 kb on + strandat 1920.247 kb on + strand, within HGI48_RS08905at 1920.247 kb on + strand, within HGI48_RS08905at 1920.248 kb on - strandat 1920.248 kb on - strand, within HGI48_RS08905at 1920.248 kb on - strand, within HGI48_RS08905at 1920.407 kb on + strand, within HGI48_RS08905at 1920.407 kb on + strandat 1920.407 kb on + strand, within HGI48_RS08905at 1920.408 kb on - strand, within HGI48_RS08905at 1920.611 kb on + strandat 1920.611 kb on + strandat 1920.611 kb on + strandat 1920.612 kb on - strandat 1920.618 kb on + strandat 1920.636 kb on + strandat 1920.636 kb on + strandat 1920.637 kb on - strandat 1920.637 kb on - strandat 1920.637 kb on - strandat 1920.637 kb on - strandat 1920.641 kb on - strandat 1920.654 kb on + strandat 1920.654 kb on + strandat 1920.654 kb on + strandat 1920.654 kb on + strandat 1920.654 kb on + strandat 1920.654 kb on + strandat 1920.654 kb on + strandat 1920.655 kb on - strandat 1920.655 kb on - strandat 1920.655 kb on - strandat 1920.655 kb on - strandat 1920.697 kb on - strandat 1920.742 kb on - strandat 1920.742 kb on - strandat 1920.751 kb on + strandat 1920.751 kb on + strandat 1920.751 kb on + strandat 1920.751 kb on + strandat 1920.752 kb on - strandat 1920.752 kb on - strandat 1920.752 kb on - strandat 1920.752 kb on - strandat 1920.947 kb on + strandat 1920.948 kb on - strand, within HGI48_RS08910at 1920.948 kb on - strand, within HGI48_RS08910at 1920.948 kb on - strand, within HGI48_RS08910at 1920.980 kb on + strand, within HGI48_RS08910at 1920.996 kb on + strand, within HGI48_RS08910at 1920.997 kb on - strand, within HGI48_RS08910at 1920.997 kb on - strand, within HGI48_RS08910at 1921.000 kb on + strandat 1921.000 kb on + strand, within HGI48_RS08910at 1921.000 kb on + strand, within HGI48_RS08910at 1921.000 kb on + strand, within HGI48_RS08910at 1921.000 kb on + strand, within HGI48_RS08910at 1921.000 kb on + strand, within HGI48_RS08910at 1921.000 kb on + strand, within HGI48_RS08910at 1921.000 kb on + strand, within HGI48_RS08910at 1921.001 kb on - strand, within HGI48_RS08910at 1921.001 kb on - strand, within HGI48_RS08910at 1921.001 kb on - strand, within HGI48_RS08910at 1921.001 kb on - strand, within HGI48_RS08910at 1921.001 kb on - strand, within HGI48_RS08910at 1921.059 kb on + strand, within HGI48_RS08910

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PDB
remove
1,918,583 - HGI48_RS08895 0.36 +0.5
1,918,583 - HGI48_RS08895 0.36 -0.4
1,918,583 - HGI48_RS08895 0.36 +1.1
1,918,596 + HGI48_RS08895 0.37 -0.0
1,918,661 + +2.9
1,918,661 + HGI48_RS08895 0.44 -1.5
1,918,662 - HGI48_RS08895 0.45 -2.1
1,918,662 - HGI48_RS08895 0.45 -1.3
1,918,664 - HGI48_RS08895 0.45 -3.1
1,918,776 + HGI48_RS08895 0.57 +0.2
1,918,894 + HGI48_RS08895 0.71 -0.3
1,918,894 + HGI48_RS08895 0.71 -0.3
1,918,894 + HGI48_RS08895 0.71 -0.1
1,918,894 + HGI48_RS08895 0.71 -0.3
1,918,894 + HGI48_RS08895 0.71 +1.8
1,918,895 - HGI48_RS08895 0.71 -0.9
1,918,921 + HGI48_RS08895 0.74 -2.5
1,919,106 + -0.3
1,919,106 + +0.0
1,919,107 - +0.7
1,919,107 - -2.5
1,919,115 + -0.1
1,919,131 - -0.3
1,919,169 + +0.0
1,919,169 + +1.0
1,919,169 + -1.1
1,919,169 + +0.5
1,919,170 - +0.5
1,919,170 - -0.2
1,919,170 - -0.8
1,919,188 - -0.0
1,919,205 + -0.5
1,919,206 - -0.2
1,919,206 - -0.5
1,919,206 - -0.5
1,919,232 - +0.6
1,919,254 + -0.0
1,919,311 - +0.2
1,919,557 - -0.3
1,919,557 - +0.2
1,919,639 + HGI48_RS08900 0.16 +0.2
1,919,639 + HGI48_RS08900 0.16 +0.5
1,919,639 + HGI48_RS08900 0.16 -1.5
1,919,640 - HGI48_RS08900 0.16 -1.7
1,919,708 - HGI48_RS08900 0.29 -0.5
1,919,755 + HGI48_RS08900 0.39 -2.4
1,919,755 + +0.9
1,919,755 + HGI48_RS08900 0.39 +0.7
1,919,756 - HGI48_RS08900 0.39 -0.2
1,919,804 - HGI48_RS08900 0.48 -0.7
1,919,806 + HGI48_RS08900 0.49 -1.1
1,919,807 - HGI48_RS08900 0.49 -1.7
1,919,857 + HGI48_RS08900 0.58 +1.3
1,919,858 - HGI48_RS08900 0.59 -2.1
1,920,053 + +0.9
1,920,054 - -3.1
1,920,078 + +1.6
1,920,175 - +1.0
1,920,247 + +1.4
1,920,247 + HGI48_RS08905 0.21 +0.9
1,920,247 + HGI48_RS08905 0.21 +0.0
1,920,248 - +2.3
1,920,248 - HGI48_RS08905 0.21 +0.2
1,920,248 - HGI48_RS08905 0.21 +0.4
1,920,407 + HGI48_RS08905 0.54 -0.6
1,920,407 + +2.6
1,920,407 + HGI48_RS08905 0.54 +1.4
1,920,408 - HGI48_RS08905 0.54 +0.7
1,920,611 + +0.3
1,920,611 + +1.3
1,920,611 + -1.9
1,920,612 - -0.7
1,920,618 + +0.4
1,920,636 + -0.0
1,920,636 + +0.5
1,920,637 - +2.0
1,920,637 - +2.3
1,920,637 - -0.1
1,920,637 - +0.7
1,920,641 - +0.4
1,920,654 + +0.5
1,920,654 + +0.4
1,920,654 + +1.0
1,920,654 + -0.7
1,920,654 + +0.3
1,920,654 + -1.1
1,920,654 + -0.6
1,920,655 - -1.7
1,920,655 - -1.0
1,920,655 - -0.6
1,920,655 - +0.8
1,920,697 - -1.6
1,920,742 - +0.6
1,920,742 - +1.7
1,920,751 + +0.6
1,920,751 + -1.1
1,920,751 + +0.4
1,920,751 + +0.4
1,920,752 - -2.7
1,920,752 - -1.1
1,920,752 - +0.1
1,920,752 - +0.4
1,920,947 + -0.1
1,920,948 - HGI48_RS08910 0.17 -0.8
1,920,948 - HGI48_RS08910 0.17 -0.0
1,920,948 - HGI48_RS08910 0.17 +0.0
1,920,980 + HGI48_RS08910 0.19 +0.1
1,920,996 + HGI48_RS08910 0.21 +0.1
1,920,997 - HGI48_RS08910 0.21 -0.4
1,920,997 - HGI48_RS08910 0.21 +1.1
1,921,000 + -1.1
1,921,000 + HGI48_RS08910 0.21 -1.6
1,921,000 + HGI48_RS08910 0.21 -0.1
1,921,000 + HGI48_RS08910 0.21 -0.6
1,921,000 + HGI48_RS08910 0.21 -1.6
1,921,000 + HGI48_RS08910 0.21 -0.2
1,921,000 + HGI48_RS08910 0.21 +0.1
1,921,000 + HGI48_RS08910 0.21 -1.6
1,921,001 - HGI48_RS08910 0.21 -0.1
1,921,001 - HGI48_RS08910 0.21 -0.5
1,921,001 - HGI48_RS08910 0.21 -0.6
1,921,001 - HGI48_RS08910 0.21 +0.1
1,921,001 - HGI48_RS08910 0.21 -0.1
1,921,059 + HGI48_RS08910 0.26 +0.2

Or see this region's nucleotide sequence