Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS08895 and HGI48_RS08900 are separated by 406 nucleotides HGI48_RS08900 and HGI48_RS08905 are separated by 72 nucleotides HGI48_RS08905 and HGI48_RS08910 are separated by 115 nucleotides
HGI48_RS08895: HGI48_RS08895 - threonine/homoserine exporter RhtA, at 1,918,269 to 1,919,150
_RS08895
HGI48_RS08900: HGI48_RS08900 - outer membrane protein OmpX, at 1,919,557 to 1,920,069
_RS08900
HGI48_RS08905: HGI48_RS08905 - MarR family transcriptional regulator, at 1,920,142 to 1,920,636
_RS08905
HGI48_RS08910: HGI48_RS08910 - MFS transporter, at 1,920,752 to 1,921,933
_RS08910
Position (kb)
1919
1920
1921 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1918.583 kb on - strand, within HGI48_RS08895 at 1918.583 kb on - strand, within HGI48_RS08895 at 1918.583 kb on - strand, within HGI48_RS08895 at 1918.596 kb on + strand, within HGI48_RS08895 at 1918.661 kb on + strand at 1918.661 kb on + strand, within HGI48_RS08895 at 1918.662 kb on - strand, within HGI48_RS08895 at 1918.662 kb on - strand, within HGI48_RS08895 at 1918.664 kb on - strand, within HGI48_RS08895 at 1918.776 kb on + strand, within HGI48_RS08895 at 1918.894 kb on + strand, within HGI48_RS08895 at 1918.894 kb on + strand, within HGI48_RS08895 at 1918.894 kb on + strand, within HGI48_RS08895 at 1918.894 kb on + strand, within HGI48_RS08895 at 1918.894 kb on + strand, within HGI48_RS08895 at 1918.895 kb on - strand, within HGI48_RS08895 at 1918.921 kb on + strand, within HGI48_RS08895 at 1919.106 kb on + strand at 1919.106 kb on + strand at 1919.107 kb on - strand at 1919.107 kb on - strand at 1919.115 kb on + strand at 1919.131 kb on - strand at 1919.169 kb on + strand at 1919.169 kb on + strand at 1919.169 kb on + strand at 1919.169 kb on + strand at 1919.170 kb on - strand at 1919.170 kb on - strand at 1919.170 kb on - strand at 1919.188 kb on - strand at 1919.205 kb on + strand at 1919.206 kb on - strand at 1919.206 kb on - strand at 1919.206 kb on - strand at 1919.232 kb on - strand at 1919.254 kb on + strand at 1919.311 kb on - strand at 1919.557 kb on - strand at 1919.557 kb on - strand at 1919.639 kb on + strand, within HGI48_RS08900 at 1919.639 kb on + strand, within HGI48_RS08900 at 1919.639 kb on + strand, within HGI48_RS08900 at 1919.640 kb on - strand, within HGI48_RS08900 at 1919.708 kb on - strand, within HGI48_RS08900 at 1919.755 kb on + strand, within HGI48_RS08900 at 1919.755 kb on + strand at 1919.755 kb on + strand, within HGI48_RS08900 at 1919.756 kb on - strand, within HGI48_RS08900 at 1919.804 kb on - strand, within HGI48_RS08900 at 1919.806 kb on + strand, within HGI48_RS08900 at 1919.807 kb on - strand, within HGI48_RS08900 at 1919.857 kb on + strand, within HGI48_RS08900 at 1919.858 kb on - strand, within HGI48_RS08900 at 1920.053 kb on + strand at 1920.054 kb on - strand at 1920.078 kb on + strand at 1920.175 kb on - strand at 1920.247 kb on + strand at 1920.247 kb on + strand, within HGI48_RS08905 at 1920.247 kb on + strand, within HGI48_RS08905 at 1920.248 kb on - strand at 1920.248 kb on - strand, within HGI48_RS08905 at 1920.248 kb on - strand, within HGI48_RS08905 at 1920.407 kb on + strand, within HGI48_RS08905 at 1920.407 kb on + strand at 1920.407 kb on + strand, within HGI48_RS08905 at 1920.408 kb on - strand, within HGI48_RS08905 at 1920.611 kb on + strand at 1920.611 kb on + strand at 1920.611 kb on + strand at 1920.612 kb on - strand at 1920.618 kb on + strand at 1920.636 kb on + strand at 1920.636 kb on + strand at 1920.637 kb on - strand at 1920.637 kb on - strand at 1920.637 kb on - strand at 1920.637 kb on - strand at 1920.641 kb on - strand at 1920.654 kb on + strand at 1920.654 kb on + strand at 1920.654 kb on + strand at 1920.654 kb on + strand at 1920.654 kb on + strand at 1920.654 kb on + strand at 1920.654 kb on + strand at 1920.655 kb on - strand at 1920.655 kb on - strand at 1920.655 kb on - strand at 1920.655 kb on - strand at 1920.697 kb on - strand at 1920.742 kb on - strand at 1920.742 kb on - strand at 1920.751 kb on + strand at 1920.751 kb on + strand at 1920.751 kb on + strand at 1920.751 kb on + strand at 1920.752 kb on - strand at 1920.752 kb on - strand at 1920.752 kb on - strand at 1920.752 kb on - strand at 1920.947 kb on + strand at 1920.948 kb on - strand, within HGI48_RS08910 at 1920.948 kb on - strand, within HGI48_RS08910 at 1920.948 kb on - strand, within HGI48_RS08910 at 1920.980 kb on + strand, within HGI48_RS08910 at 1920.996 kb on + strand, within HGI48_RS08910 at 1920.997 kb on - strand, within HGI48_RS08910 at 1920.997 kb on - strand, within HGI48_RS08910 at 1921.000 kb on + strand at 1921.000 kb on + strand, within HGI48_RS08910 at 1921.000 kb on + strand, within HGI48_RS08910 at 1921.000 kb on + strand, within HGI48_RS08910 at 1921.000 kb on + strand, within HGI48_RS08910 at 1921.000 kb on + strand, within HGI48_RS08910 at 1921.000 kb on + strand, within HGI48_RS08910 at 1921.000 kb on + strand, within HGI48_RS08910 at 1921.001 kb on - strand, within HGI48_RS08910 at 1921.001 kb on - strand, within HGI48_RS08910 at 1921.001 kb on - strand, within HGI48_RS08910 at 1921.001 kb on - strand, within HGI48_RS08910 at 1921.001 kb on - strand, within HGI48_RS08910 at 1921.059 kb on + strand, within HGI48_RS08910
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 1,918,583 - HGI48_RS08895 0.36 +0.5 1,918,583 - HGI48_RS08895 0.36 -0.4 1,918,583 - HGI48_RS08895 0.36 +1.1 1,918,596 + HGI48_RS08895 0.37 -0.0 1,918,661 + +2.9 1,918,661 + HGI48_RS08895 0.44 -1.5 1,918,662 - HGI48_RS08895 0.45 -2.1 1,918,662 - HGI48_RS08895 0.45 -1.3 1,918,664 - HGI48_RS08895 0.45 -3.1 1,918,776 + HGI48_RS08895 0.57 +0.2 1,918,894 + HGI48_RS08895 0.71 -0.3 1,918,894 + HGI48_RS08895 0.71 -0.3 1,918,894 + HGI48_RS08895 0.71 -0.1 1,918,894 + HGI48_RS08895 0.71 -0.3 1,918,894 + HGI48_RS08895 0.71 +1.8 1,918,895 - HGI48_RS08895 0.71 -0.9 1,918,921 + HGI48_RS08895 0.74 -2.5 1,919,106 + -0.3 1,919,106 + +0.0 1,919,107 - +0.7 1,919,107 - -2.5 1,919,115 + -0.1 1,919,131 - -0.3 1,919,169 + +0.0 1,919,169 + +1.0 1,919,169 + -1.1 1,919,169 + +0.5 1,919,170 - +0.5 1,919,170 - -0.2 1,919,170 - -0.8 1,919,188 - -0.0 1,919,205 + -0.5 1,919,206 - -0.2 1,919,206 - -0.5 1,919,206 - -0.5 1,919,232 - +0.6 1,919,254 + -0.0 1,919,311 - +0.2 1,919,557 - -0.3 1,919,557 - +0.2 1,919,639 + HGI48_RS08900 0.16 +0.2 1,919,639 + HGI48_RS08900 0.16 +0.5 1,919,639 + HGI48_RS08900 0.16 -1.5 1,919,640 - HGI48_RS08900 0.16 -1.7 1,919,708 - HGI48_RS08900 0.29 -0.5 1,919,755 + HGI48_RS08900 0.39 -2.4 1,919,755 + +0.9 1,919,755 + HGI48_RS08900 0.39 +0.7 1,919,756 - HGI48_RS08900 0.39 -0.2 1,919,804 - HGI48_RS08900 0.48 -0.7 1,919,806 + HGI48_RS08900 0.49 -1.1 1,919,807 - HGI48_RS08900 0.49 -1.7 1,919,857 + HGI48_RS08900 0.58 +1.3 1,919,858 - HGI48_RS08900 0.59 -2.1 1,920,053 + +0.9 1,920,054 - -3.1 1,920,078 + +1.6 1,920,175 - +1.0 1,920,247 + +1.4 1,920,247 + HGI48_RS08905 0.21 +0.9 1,920,247 + HGI48_RS08905 0.21 +0.0 1,920,248 - +2.3 1,920,248 - HGI48_RS08905 0.21 +0.2 1,920,248 - HGI48_RS08905 0.21 +0.4 1,920,407 + HGI48_RS08905 0.54 -0.6 1,920,407 + +2.6 1,920,407 + HGI48_RS08905 0.54 +1.4 1,920,408 - HGI48_RS08905 0.54 +0.7 1,920,611 + +0.3 1,920,611 + +1.3 1,920,611 + -1.9 1,920,612 - -0.7 1,920,618 + +0.4 1,920,636 + -0.0 1,920,636 + +0.5 1,920,637 - +2.0 1,920,637 - +2.3 1,920,637 - -0.1 1,920,637 - +0.7 1,920,641 - +0.4 1,920,654 + +0.5 1,920,654 + +0.4 1,920,654 + +1.0 1,920,654 + -0.7 1,920,654 + +0.3 1,920,654 + -1.1 1,920,654 + -0.6 1,920,655 - -1.7 1,920,655 - -1.0 1,920,655 - -0.6 1,920,655 - +0.8 1,920,697 - -1.6 1,920,742 - +0.6 1,920,742 - +1.7 1,920,751 + +0.6 1,920,751 + -1.1 1,920,751 + +0.4 1,920,751 + +0.4 1,920,752 - -2.7 1,920,752 - -1.1 1,920,752 - +0.1 1,920,752 - +0.4 1,920,947 + -0.1 1,920,948 - HGI48_RS08910 0.17 -0.8 1,920,948 - HGI48_RS08910 0.17 -0.0 1,920,948 - HGI48_RS08910 0.17 +0.0 1,920,980 + HGI48_RS08910 0.19 +0.1 1,920,996 + HGI48_RS08910 0.21 +0.1 1,920,997 - HGI48_RS08910 0.21 -0.4 1,920,997 - HGI48_RS08910 0.21 +1.1 1,921,000 + -1.1 1,921,000 + HGI48_RS08910 0.21 -1.6 1,921,000 + HGI48_RS08910 0.21 -0.1 1,921,000 + HGI48_RS08910 0.21 -0.6 1,921,000 + HGI48_RS08910 0.21 -1.6 1,921,000 + HGI48_RS08910 0.21 -0.2 1,921,000 + HGI48_RS08910 0.21 +0.1 1,921,000 + HGI48_RS08910 0.21 -1.6 1,921,001 - HGI48_RS08910 0.21 -0.1 1,921,001 - HGI48_RS08910 0.21 -0.5 1,921,001 - HGI48_RS08910 0.21 -0.6 1,921,001 - HGI48_RS08910 0.21 +0.1 1,921,001 - HGI48_RS08910 0.21 -0.1 1,921,059 + HGI48_RS08910 0.26 +0.2
Or see this region's nucleotide sequence