Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS07950

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,702,227	+				+2.6
1,702,242	+				-2.6
1,702,242	+				-0.6
1,702,242	+				-1.6
1,702,244	+				+0.4
1,702,276	+				+1.6
1,702,277	-				+1.8
1,702,306	+				+0.7
1,702,337	-				+0.8
1,702,490	+				+1.0
1,702,491	-				+0.4
1,702,491	-				-1.0
1,702,547	-				+0.6
1,702,547	-				-1.9
1,702,547	-				-0.9
1,702,557	+				-0.3
1,702,558	-				+0.3
1,702,558	-				+1.0
1,702,558	-				-0.6
1,702,628	-				+2.0
1,702,652	-				+0.9
1,702,652	-				+0.4
1,702,652	-				-0.5
1,702,660	-				-0.3
1,702,712	+				+1.2
1,702,712	+				+1.2
1,702,713	-				+2.3
1,702,715	+				+0.4
1,702,716	-				-0.6
1,702,716	-				+0.4
1,702,716	-				-2.1
1,702,721	+				+1.8
1,702,722	-		HGI48_RS07945	0.11	+0.6
1,702,725	+		HGI48_RS07945	0.11	+0.4
1,702,725	+		HGI48_RS07945	0.11	+0.7
1,702,725	+				+0.4
1,702,726	-		HGI48_RS07945	0.12	+0.1
1,702,793	+		HGI48_RS07945	0.25	+0.7
1,702,793	+				+0.4
1,702,911	-		HGI48_RS07945	0.48	-1.9
1,702,911	-		HGI48_RS07945	0.48	+1.2
1,703,072	+		HGI48_RS07945	0.80	-2.4
1,703,072	+		HGI48_RS07945	0.80	+0.1
1,703,073	-		HGI48_RS07945	0.80	+1.4
1,703,073	-		HGI48_RS07945	0.80	-1.5
1,703,170	-				-0.6
1,703,308	+				-0.4
1,703,308	+				+0.6
1,703,308	+				+1.3
1,703,309	-				+3.1
1,703,309	-				+1.3
1,703,309	-				-0.3
1,703,310	+				+0.4
1,703,311	-				-0.1
1,703,311	-				+1.2
1,703,311	-				-0.1
1,703,403	+		HGI48_RS07950	0.14	+0.1
1,703,403	+				+0.4
1,703,403	+		HGI48_RS07950	0.14	-0.9
1,703,404	-		HGI48_RS07950	0.14	+0.8
1,703,404	-		HGI48_RS07950	0.14	+0.0
1,703,404	-		HGI48_RS07950	0.14	-1.6
1,703,404	-		HGI48_RS07950	0.14	-0.6
1,703,447	+		HGI48_RS07950	0.16	+0.8
1,703,447	+		HGI48_RS07950	0.16	-0.6
1,703,448	-		HGI48_RS07950	0.17	-0.1
1,703,448	-		HGI48_RS07950	0.17	+1.5
1,703,604	+		HGI48_RS07950	0.27	-1.6
1,703,633	-		HGI48_RS07950	0.29	+0.0
1,703,633	-		HGI48_RS07950	0.29	+0.2
1,703,731	+		HGI48_RS07950	0.36	+0.2
1,703,731	+		HGI48_RS07950	0.36	+0.0
1,703,731	+		HGI48_RS07950	0.36	-1.4
1,703,731	+		HGI48_RS07950	0.36	+0.6
1,703,731	+		HGI48_RS07950	0.36	-0.1
1,703,732	-		HGI48_RS07950	0.36	-2.1
1,703,732	-		HGI48_RS07950	0.36	-2.1
1,703,812	-				+1.4
1,703,983	+		HGI48_RS07950	0.53	+1.3
1,703,984	-		HGI48_RS07950	0.53	+0.4
1,703,984	-		HGI48_RS07950	0.53	-0.7
1,704,016	+		HGI48_RS07950	0.55	+0.7
1,704,016	+		HGI48_RS07950	0.55	-0.2
1,704,016	+		HGI48_RS07950	0.55	+0.7
1,704,016	+		HGI48_RS07950	0.55	-1.0
1,704,017	-		HGI48_RS07950	0.55	-2.4
1,704,017	-		HGI48_RS07950	0.55	-0.9
1,704,017	-		HGI48_RS07950	0.55	+0.2
1,704,017	-		HGI48_RS07950	0.55	+1.8
1,704,017	-		HGI48_RS07950	0.55	+1.5
1,704,017	-		HGI48_RS07950	0.55	-1.6
1,704,017	-		HGI48_RS07950	0.55	+0.1
1,704,017	-		HGI48_RS07950	0.55	+1.4
1,704,017	-		HGI48_RS07950	0.55	-0.6
1,704,017	-		HGI48_RS07950	0.55	+0.6
1,704,038	-		HGI48_RS07950	0.56	-0.3
1,704,077	-				-0.1
1,704,077	-				+0.9
1,704,077	-		HGI48_RS07950	0.59	-2.1
1,704,077	-		HGI48_RS07950	0.59	+1.0
1,704,146	-		HGI48_RS07950	0.64	+0.2
1,704,146	-		HGI48_RS07950	0.64	-1.1
1,704,146	-		HGI48_RS07950	0.64	+0.4
1,704,146	-		HGI48_RS07950	0.64	+0.4
1,704,146	-				-0.1
1,704,309	-		HGI48_RS07950	0.75	-0.0
1,704,309	-		HGI48_RS07950	0.75	-0.9
1,704,330	+				+0.9
1,704,330	+		HGI48_RS07950	0.76	+0.2
1,704,330	+		HGI48_RS07950	0.76	+1.0
1,704,331	-		HGI48_RS07950	0.76	+0.2
1,704,331	-		HGI48_RS07950	0.76	+1.6
1,704,349	+				-1.1
1,704,349	+		HGI48_RS07950	0.77	-0.6
1,704,349	+		HGI48_RS07950	0.77	+0.3
1,704,350	-		HGI48_RS07950	0.78	+1.0
1,704,350	-		HGI48_RS07950	0.78	-1.6
1,704,373	+		HGI48_RS07950	0.79	+0.8
1,704,373	+				+0.4
1,704,373	+		HGI48_RS07950	0.79	-1.6
1,704,373	+		HGI48_RS07950	0.79	-1.4
1,704,373	+		HGI48_RS07950	0.79	+0.4
1,704,373	+		HGI48_RS07950	0.79	+0.3
1,704,374	-		HGI48_RS07950	0.79	-0.8
1,704,374	-		HGI48_RS07950	0.79	-0.9
1,704,374	-		HGI48_RS07950	0.79	-0.9
1,704,374	-		HGI48_RS07950	0.79	+0.4
1,704,374	-		HGI48_RS07950	0.79	+1.5
1,704,403	+		HGI48_RS07950	0.81	+1.8
1,704,403	+		HGI48_RS07950	0.81	+0.5
1,704,404	-		HGI48_RS07950	0.81	-0.6
1,704,474	+		HGI48_RS07950	0.86	+0.4
1,704,474	+		HGI48_RS07950	0.86	+0.4
1,704,475	-		HGI48_RS07950	0.86	+1.0
1,704,475	-		HGI48_RS07950	0.86	+0.3
1,704,490	+				-0.6
1,704,491	-		HGI48_RS07950	0.87	-1.6
1,704,491	-		HGI48_RS07950	0.87	-0.7
1,704,491	-		HGI48_RS07950	0.87	-1.3
1,704,491	-		HGI48_RS07950	0.87	+0.2
1,704,524	+		HGI48_RS07950	0.89	+2.0
1,704,524	+				-1.1
1,704,525	-		HGI48_RS07950	0.89	+0.4
1,704,525	-		HGI48_RS07950	0.89	-2.9
1,704,525	-				-0.1
1,704,628	+				+0.4
1,704,628	+				+0.2
1,704,628	+				+0.7
1,704,628	+				+0.9
1,704,628	+				-0.4
1,704,629	-				-0.6
1,704,629	-				+0.1
1,704,629	-				+1.8
1,704,629	-				-1.1
1,704,680	-				+1.3
1,704,824	+		HGI48_RS07955	0.31	+0.8
1,704,825	-				-0.6
1,704,832	-		HGI48_RS07955	0.33	+0.2
1,704,883	-		HGI48_RS07955	0.45	+0.6
1,704,883	-		HGI48_RS07955	0.45	+2.5
1,704,883	-		HGI48_RS07955	0.45	+0.9
1,704,892	-		HGI48_RS07955	0.47	-1.6
1,704,945	+		HGI48_RS07955	0.59	-0.0
1,704,945	+		HGI48_RS07955	0.59	+0.6
1,704,945	+		HGI48_RS07955	0.59	-0.3
1,704,945	+		HGI48_RS07955	0.59	-2.4
1,704,945	+				-0.6
1,704,945	+		HGI48_RS07955	0.59	+1.4
1,704,945	+		HGI48_RS07955	0.59	+0.5
1,704,946	-		HGI48_RS07955	0.60	+0.3
1,704,946	-		HGI48_RS07955	0.60	+0.7
1,704,946	-		HGI48_RS07955	0.60	+1.0
1,704,946	-		HGI48_RS07955	0.60	+0.7
1,704,946	-		HGI48_RS07955	0.60	-0.1
1,704,946	-		HGI48_RS07955	0.60	-0.2
1,704,946	-		HGI48_RS07955	0.60	+0.7
1,704,946	-		HGI48_RS07955	0.60	+0.8
1,704,946	-		HGI48_RS07955	0.60	+0.6
1,704,946	-		HGI48_RS07955	0.60	-0.1
1,705,121	+				+0.7
1,705,121	+				-0.1
1,705,121	+				+0.4
1,705,121	+				+1.1
1,705,122	-				+1.1
1,705,122	-				-0.6
1,705,122	-				-0.1
1,705,158	+				+1.1
1,705,158	+				-1.1
1,705,158	+				+1.4
1,705,158	+				+1.1
1,705,159	-				+1.2
1,705,159	-				+1.4
1,705,337	+		HGI48_RS07960	0.12	-0.1
1,705,353	+		HGI48_RS07960	0.13	+1.9
1,705,353	+				+1.0
1,705,354	-		HGI48_RS07960	0.13	+1.0
1,705,509	+		HGI48_RS07960	0.22	+0.1
1,705,510	-		HGI48_RS07960	0.22	+0.7
1,705,650	+		HGI48_RS07960	0.30	+1.3
1,705,652	+		HGI48_RS07960	0.30	-1.1
1,705,652	+		HGI48_RS07960	0.30	-0.9
1,705,668	+		HGI48_RS07960	0.31	-0.5