Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS07600

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,619,793	+		HGI48_RS07590	0.86	-0.1
1,619,794	-		HGI48_RS07590	0.87	-0.5
1,619,794	-		HGI48_RS07590	0.87	+0.8
1,619,815	+				+0.2
1,619,815	+				-1.1
1,619,816	-				-0.2
1,619,823	+				-1.1
1,619,824	-				-0.5
1,619,826	+				+0.5
1,619,827	-				-1.1
1,619,827	-				+0.6
1,619,832	+				-0.5
1,619,914	+				-1.1
1,619,914	+				+0.1
1,619,914	+				-3.4
1,619,915	-				-0.8
1,619,915	-				+0.4
1,619,944	+				-0.5
1,619,944	+				-2.7
1,619,945	-				+0.1
1,619,956	+				-1.0
1,619,959	+				+0.3
1,619,965	+				+0.8
1,619,965	+				+0.5
1,619,965	+				-0.1
1,619,965	+				+0.5
1,619,965	+				-0.1
1,619,965	+				-0.5
1,619,965	+				+1.2
1,619,966	-				+0.4
1,619,966	-				+3.1
1,619,966	-				+1.5
1,619,966	-				-2.1
1,619,966	-				+0.8
1,619,966	-				+0.7
1,619,966	-				+1.3
1,619,980	+				-0.4
1,619,995	+				+1.7
1,620,002	-				-1.1
1,620,002	-				+2.5
1,620,017	+				+1.1
1,620,017	+				-1.0
1,620,025	+				-1.5
1,620,063	+				+1.5
1,620,063	+				-0.1
1,620,067	+				-2.1
1,620,068	-				-1.1
1,620,094	+				+0.2
1,620,159	+				-0.1
1,620,159	+				+1.0
1,620,159	+				+1.5
1,620,159	+				-0.5
1,620,160	-				+0.7
1,620,160	-				-0.5
1,620,160	-				-0.4
1,620,160	-				-1.5
1,620,175	+				+1.2
1,620,175	+				-0.1
1,620,175	+				-0.3
1,620,315	+		HGI48_RS07595	0.37	-1.5
1,620,315	+		HGI48_RS07595	0.37	-0.3
1,620,315	+		HGI48_RS07595	0.37	+0.3
1,620,315	+		HGI48_RS07595	0.37	+1.1
1,620,315	+				+0.9
1,620,316	-		HGI48_RS07595	0.37	+0.3
1,620,316	-		HGI48_RS07595	0.37	-1.5
1,620,316	-		HGI48_RS07595	0.37	+0.7
1,620,362	-		HGI48_RS07595	0.50	+1.1
1,620,377	-		HGI48_RS07595	0.54	+0.6
1,620,377	-		HGI48_RS07595	0.54	+0.6
1,620,380	-		HGI48_RS07595	0.54	+1.5
1,620,429	+		HGI48_RS07595	0.68	+0.2
1,620,452	-		HGI48_RS07595	0.74	+0.0
1,620,477	+		HGI48_RS07595	0.81	-0.3
1,620,485	+		HGI48_RS07595	0.83	-0.9
1,620,529	+				-0.0
1,620,529	+				+0.7
1,620,532	-				+0.3
1,620,584	+				+1.5
1,620,584	+				-0.4
1,620,584	+				-0.1
1,620,584	+				+0.1
1,620,584	+				+0.5
1,620,584	+				-1.9
1,620,585	-				-1.9
1,620,585	-				-1.3
1,620,585	-				-1.3
1,620,585	-				-1.1
1,620,585	-				-0.4
1,620,585	-				-1.9
1,620,625	+				+0.5
1,620,625	+				-1.9
1,620,625	+				-1.0
1,620,626	-				+0.8
1,620,683	+		HGI48_RS07600	0.24	-0.1
1,620,684	-		HGI48_RS07600	0.24	-2.1
1,620,684	-		HGI48_RS07600	0.24	+0.0
1,620,732	-		HGI48_RS07600	0.43	-0.7
1,620,732	-		HGI48_RS07600	0.43	-1.1
1,620,877	-				-0.0
1,620,877	-				-0.3
1,620,908	-				+1.4
1,620,921	-				-2.5
1,620,971	+				+0.2
1,620,994	-				-0.1
1,621,037	+				+0.8
1,621,037	+				-0.3
1,621,037	+				-0.2
1,621,037	+				-1.1
1,621,037	+				-0.2
1,621,037	+				-0.1
1,621,037	+				+0.1
1,621,037	+				+0.5
1,621,037	+				-1.5
1,621,037	+				-0.9
1,621,038	-				+0.7
1,621,038	-				-0.3
1,621,038	-				-1.5
1,621,038	-				-0.0
1,621,038	-				+0.9
1,621,038	-				+0.8
1,621,038	-				+2.4
1,621,038	-				-1.1
1,621,038	-				+0.8
1,621,039	+				-0.1
1,621,039	+				-1.2
1,621,039	+				+0.3
1,621,039	+				+0.5
1,621,039	+				+0.3
1,621,039	+				-1.7
1,621,039	+				-0.7
1,621,039	+				+0.5
1,621,039	+				-0.9
1,621,039	+				-0.9
1,621,039	+				-1.5
1,621,040	-				-1.9
1,621,040	-				+0.7
1,621,040	-				-2.1
1,621,040	-				+1.5
1,621,040	-				+1.1
1,621,040	-				-0.5
1,621,040	-				+0.3
1,621,040	-				+1.9
1,621,040	-				+0.7
1,621,040	-				-0.1
1,621,040	-				-1.2
1,621,040	-				+1.6
1,621,040	-				+0.7
1,621,040	-				+0.5
1,621,040	-				-0.3
1,621,105	+		HGI48_RS07605	0.36	-2.5
1,621,105	+		HGI48_RS07605	0.36	-0.1
1,621,105	+		HGI48_RS07605	0.36	-0.5
1,621,105	+		HGI48_RS07605	0.36	-0.9
1,621,105	+		HGI48_RS07605	0.36	-0.4
1,621,105	+		HGI48_RS07605	0.36	+0.7
1,621,106	-		HGI48_RS07605	0.36	+1.3
1,621,106	-				+0.9
1,621,106	-		HGI48_RS07605	0.36	+1.5
1,621,106	-		HGI48_RS07605	0.36	+0.2
1,621,106	-		HGI48_RS07605	0.36	-0.1
1,621,106	-		HGI48_RS07605	0.36	+1.2
1,621,163	+				-0.5
1,621,163	+		HGI48_RS07605	0.68	+0.8
1,621,164	-		HGI48_RS07605	0.68	-1.6
1,621,164	-		HGI48_RS07605	0.68	-3.3
1,621,164	-				-1.1
1,621,164	-				-1.1
1,621,164	-		HGI48_RS07605	0.68	+0.2
1,621,303	+				-1.5
1,621,304	-				-1.3
1,621,304	-				-0.0
1,621,304	-				-0.8
1,621,304	-				-0.7
1,621,344	-				-0.5
1,621,360	+				-1.1
1,621,360	+				-1.1
1,621,361	-				-0.9
1,621,429	-		HGI48_RS07610	0.12	-0.3
1,621,438	-		HGI48_RS07610	0.13	+1.6
1,621,438	-		HGI48_RS07610	0.13	+0.6
1,621,438	-				-0.5
1,621,529	+		HGI48_RS07610	0.21	-1.9
1,621,529	+		HGI48_RS07610	0.21	-0.5
1,621,530	-		HGI48_RS07610	0.22	-0.4
1,621,609	+		HGI48_RS07610	0.29	+0.4
1,621,609	+		HGI48_RS07610	0.29	+1.3
1,621,609	+		HGI48_RS07610	0.29	-1.3
1,621,609	+		HGI48_RS07610	0.29	-0.9
1,621,609	+		HGI48_RS07610	0.29	-1.5
1,621,610	-		HGI48_RS07610	0.29	-0.2
1,621,610	-		HGI48_RS07610	0.29	+0.5
1,621,610	-		HGI48_RS07610	0.29	+0.5
1,621,610	-		HGI48_RS07610	0.29	-0.8
1,621,610	-		HGI48_RS07610	0.29	+1.3
1,621,610	-		HGI48_RS07610	0.29	+0.3
1,621,610	-		HGI48_RS07610	0.29	-0.1
1,621,610	-		HGI48_RS07610	0.29	+0.2
1,621,824	-		HGI48_RS07610	0.49	-0.1
1,621,824	-		HGI48_RS07610	0.49	-1.5
1,621,834	+		HGI48_RS07610	0.50	+0.5