Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS07525

Experiment: PDB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS07520 and HGI48_RS07525 are separated by 414 nucleotidesHGI48_RS07525 and HGI48_RS07530 are separated by 158 nucleotides HGI48_RS07520: HGI48_RS07520 - phosphonate ABC transporter, permease protein PhnE, at 1,600,386 to 1,601,276 _RS07520 HGI48_RS07525: HGI48_RS07525 - diaminobutyrate--2-oxoglutarate transaminase, at 1,601,691 to 1,603,115 _RS07525 HGI48_RS07530: HGI48_RS07530 - TonB-dependent receptor, at 1,603,274 to 1,605,388 _RS07530 Position (kb) 1601 1602 1603 1604Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1600.811 kb on + strand, within HGI48_RS07520at 1600.908 kb on + strand, within HGI48_RS07520at 1601.040 kb on + strand, within HGI48_RS07520at 1601.040 kb on + strand, within HGI48_RS07520at 1601.113 kb on - strand, within HGI48_RS07520at 1601.113 kb on - strand, within HGI48_RS07520at 1601.223 kb on + strandat 1601.223 kb on + strandat 1601.223 kb on + strandat 1601.388 kb on - strandat 1601.534 kb on + strandat 1601.534 kb on + strandat 1601.534 kb on + strandat 1601.534 kb on + strandat 1601.535 kb on - strandat 1601.567 kb on + strandat 1601.592 kb on - strandat 1601.619 kb on + strandat 1601.624 kb on - strandat 1601.624 kb on - strandat 1601.778 kb on + strandat 1601.779 kb on - strandat 1601.812 kb on + strandat 1601.812 kb on + strandat 1601.812 kb on + strandat 1601.812 kb on + strandat 1601.813 kb on - strandat 1601.821 kb on - strandat 1601.996 kb on + strand, within HGI48_RS07525at 1601.996 kb on + strand, within HGI48_RS07525at 1601.996 kb on + strand, within HGI48_RS07525at 1601.997 kb on - strand, within HGI48_RS07525at 1601.997 kb on - strand, within HGI48_RS07525at 1601.997 kb on - strand, within HGI48_RS07525at 1601.997 kb on - strand, within HGI48_RS07525at 1602.145 kb on - strand, within HGI48_RS07525at 1602.145 kb on - strand, within HGI48_RS07525at 1602.346 kb on - strand, within HGI48_RS07525at 1602.795 kb on - strand, within HGI48_RS07525at 1603.045 kb on + strandat 1603.046 kb on - strandat 1603.046 kb on - strandat 1603.119 kb on + strandat 1603.119 kb on + strandat 1603.120 kb on - strandat 1603.120 kb on - strandat 1603.135 kb on - strandat 1603.149 kb on - strandat 1603.185 kb on + strandat 1603.186 kb on - strandat 1603.186 kb on - strandat 1603.186 kb on - strandat 1603.186 kb on - strandat 1603.291 kb on - strandat 1603.292 kb on + strandat 1603.292 kb on + strandat 1603.309 kb on - strandat 1603.339 kb on + strandat 1603.340 kb on - strandat 1603.427 kb on - strandat 1603.429 kb on + strandat 1603.430 kb on - strandat 1603.482 kb on + strandat 1603.482 kb on + strandat 1603.485 kb on + strandat 1603.486 kb on - strand, within HGI48_RS07530at 1603.490 kb on - strandat 1603.494 kb on + strandat 1603.582 kb on + strand, within HGI48_RS07530at 1603.583 kb on - strandat 1603.583 kb on - strandat 1603.717 kb on + strand, within HGI48_RS07530at 1603.717 kb on + strand, within HGI48_RS07530at 1603.717 kb on + strandat 1603.718 kb on - strandat 1603.718 kb on - strand, within HGI48_RS07530at 1603.718 kb on - strand, within HGI48_RS07530at 1603.718 kb on - strandat 1603.720 kb on + strand, within HGI48_RS07530at 1603.720 kb on + strand, within HGI48_RS07530at 1603.721 kb on - strandat 1603.721 kb on - strand, within HGI48_RS07530at 1603.721 kb on - strand, within HGI48_RS07530at 1603.721 kb on - strand, within HGI48_RS07530at 1603.775 kb on - strand, within HGI48_RS07530at 1603.775 kb on - strandat 1603.775 kb on - strand, within HGI48_RS07530at 1603.812 kb on - strandat 1603.823 kb on + strand, within HGI48_RS07530at 1603.823 kb on + strand, within HGI48_RS07530at 1603.894 kb on + strand, within HGI48_RS07530at 1603.928 kb on - strand, within HGI48_RS07530at 1604.054 kb on + strand, within HGI48_RS07530at 1604.054 kb on + strandat 1604.054 kb on + strandat 1604.055 kb on - strand, within HGI48_RS07530at 1604.055 kb on - strand, within HGI48_RS07530at 1604.055 kb on - strand, within HGI48_RS07530at 1604.077 kb on + strand, within HGI48_RS07530at 1604.078 kb on - strand, within HGI48_RS07530

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Per-strain Table

Position Strand Gene LocusTag Fraction PDB
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1,600,811 + HGI48_RS07520 0.48 +0.5
1,600,908 + HGI48_RS07520 0.59 -2.3
1,601,040 + HGI48_RS07520 0.73 +1.3
1,601,040 + HGI48_RS07520 0.73 -0.1
1,601,113 - HGI48_RS07520 0.82 +1.4
1,601,113 - HGI48_RS07520 0.82 +0.0
1,601,223 + +0.5
1,601,223 + -0.0
1,601,223 + +0.3
1,601,388 - -1.1
1,601,534 + +0.9
1,601,534 + -1.2
1,601,534 + -1.0
1,601,534 + +0.5
1,601,535 - +0.2
1,601,567 + -0.3
1,601,592 - +0.8
1,601,619 + -1.5
1,601,624 - +1.7
1,601,624 - -1.1
1,601,778 + +2.1
1,601,779 - -2.1
1,601,812 + -0.3
1,601,812 + +0.1
1,601,812 + -1.1
1,601,812 + +0.3
1,601,813 - +0.0
1,601,821 - -1.3
1,601,996 + HGI48_RS07525 0.21 -1.3
1,601,996 + HGI48_RS07525 0.21 +0.5
1,601,996 + HGI48_RS07525 0.21 +0.7
1,601,997 - HGI48_RS07525 0.21 -1.9
1,601,997 - HGI48_RS07525 0.21 -1.5
1,601,997 - HGI48_RS07525 0.21 -2.1
1,601,997 - HGI48_RS07525 0.21 -1.7
1,602,145 - HGI48_RS07525 0.32 -1.5
1,602,145 - HGI48_RS07525 0.32 +0.2
1,602,346 - HGI48_RS07525 0.46 +0.5
1,602,795 - HGI48_RS07525 0.77 -1.3
1,603,045 + -0.5
1,603,046 - -0.2
1,603,046 - +2.9
1,603,119 + +0.2
1,603,119 + +1.0
1,603,120 - -0.7
1,603,120 - -0.8
1,603,135 - -0.5
1,603,149 - -0.5
1,603,185 + +1.5
1,603,186 - -1.0
1,603,186 - +0.3
1,603,186 - -0.4
1,603,186 - -0.1
1,603,291 - -1.0
1,603,292 + -0.1
1,603,292 + +1.5
1,603,309 - +0.6
1,603,339 + +0.0
1,603,340 - +1.4
1,603,427 - -1.1
1,603,429 + -1.5
1,603,430 - +1.1
1,603,482 + -0.9
1,603,482 + +1.5
1,603,485 + -1.9
1,603,486 - HGI48_RS07530 0.10 -1.3
1,603,490 - -0.1
1,603,494 + -1.1
1,603,582 + HGI48_RS07530 0.15 -1.3
1,603,583 - +1.5
1,603,583 - -0.1
1,603,717 + HGI48_RS07530 0.21 -0.2
1,603,717 + HGI48_RS07530 0.21 +0.2
1,603,717 + +1.9
1,603,718 - -1.1
1,603,718 - HGI48_RS07530 0.21 -0.1
1,603,718 - HGI48_RS07530 0.21 +0.1
1,603,718 - -0.1
1,603,720 + HGI48_RS07530 0.21 -1.5
1,603,720 + HGI48_RS07530 0.21 -1.9
1,603,721 - +0.5
1,603,721 - HGI48_RS07530 0.21 -0.9
1,603,721 - HGI48_RS07530 0.21 +0.8
1,603,721 - HGI48_RS07530 0.21 -0.0
1,603,775 - HGI48_RS07530 0.24 +1.5
1,603,775 - +0.5
1,603,775 - HGI48_RS07530 0.24 +0.5
1,603,812 - +2.1
1,603,823 + HGI48_RS07530 0.26 -0.5
1,603,823 + HGI48_RS07530 0.26 -0.3
1,603,894 + HGI48_RS07530 0.29 -1.9
1,603,928 - HGI48_RS07530 0.31 +0.2
1,604,054 + HGI48_RS07530 0.37 -0.3
1,604,054 + +0.5
1,604,054 + +0.5
1,604,055 - HGI48_RS07530 0.37 +0.6
1,604,055 - HGI48_RS07530 0.37 -1.3
1,604,055 - HGI48_RS07530 0.37 -0.5
1,604,077 + HGI48_RS07530 0.38 +0.5
1,604,078 - HGI48_RS07530 0.38 +0.9

Or see this region's nucleotide sequence