Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS07520 and HGI48_RS07525 are separated by 414 nucleotides HGI48_RS07525 and HGI48_RS07530 are separated by 158 nucleotides
HGI48_RS07520: HGI48_RS07520 - phosphonate ABC transporter, permease protein PhnE, at 1,600,386 to 1,601,276
_RS07520
HGI48_RS07525: HGI48_RS07525 - diaminobutyrate--2-oxoglutarate transaminase, at 1,601,691 to 1,603,115
_RS07525
HGI48_RS07530: HGI48_RS07530 - TonB-dependent receptor, at 1,603,274 to 1,605,388
_RS07530
Position (kb)
1601
1602
1603
1604 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1600.811 kb on + strand, within HGI48_RS07520 at 1600.908 kb on + strand, within HGI48_RS07520 at 1601.040 kb on + strand, within HGI48_RS07520 at 1601.040 kb on + strand, within HGI48_RS07520 at 1601.113 kb on - strand, within HGI48_RS07520 at 1601.113 kb on - strand, within HGI48_RS07520 at 1601.223 kb on + strand at 1601.223 kb on + strand at 1601.223 kb on + strand at 1601.388 kb on - strand at 1601.534 kb on + strand at 1601.534 kb on + strand at 1601.534 kb on + strand at 1601.534 kb on + strand at 1601.535 kb on - strand at 1601.567 kb on + strand at 1601.592 kb on - strand at 1601.619 kb on + strand at 1601.624 kb on - strand at 1601.624 kb on - strand at 1601.778 kb on + strand at 1601.779 kb on - strand at 1601.812 kb on + strand at 1601.812 kb on + strand at 1601.812 kb on + strand at 1601.812 kb on + strand at 1601.813 kb on - strand at 1601.821 kb on - strand at 1601.996 kb on + strand, within HGI48_RS07525 at 1601.996 kb on + strand, within HGI48_RS07525 at 1601.996 kb on + strand, within HGI48_RS07525 at 1601.997 kb on - strand, within HGI48_RS07525 at 1601.997 kb on - strand, within HGI48_RS07525 at 1601.997 kb on - strand, within HGI48_RS07525 at 1601.997 kb on - strand, within HGI48_RS07525 at 1602.145 kb on - strand, within HGI48_RS07525 at 1602.145 kb on - strand, within HGI48_RS07525 at 1602.346 kb on - strand, within HGI48_RS07525 at 1602.795 kb on - strand, within HGI48_RS07525 at 1603.045 kb on + strand at 1603.046 kb on - strand at 1603.046 kb on - strand at 1603.119 kb on + strand at 1603.119 kb on + strand at 1603.120 kb on - strand at 1603.120 kb on - strand at 1603.135 kb on - strand at 1603.149 kb on - strand at 1603.185 kb on + strand at 1603.186 kb on - strand at 1603.186 kb on - strand at 1603.186 kb on - strand at 1603.186 kb on - strand at 1603.291 kb on - strand at 1603.292 kb on + strand at 1603.292 kb on + strand at 1603.309 kb on - strand at 1603.339 kb on + strand at 1603.340 kb on - strand at 1603.427 kb on - strand at 1603.429 kb on + strand at 1603.430 kb on - strand at 1603.482 kb on + strand at 1603.482 kb on + strand at 1603.485 kb on + strand at 1603.486 kb on - strand, within HGI48_RS07530 at 1603.490 kb on - strand at 1603.494 kb on + strand at 1603.582 kb on + strand, within HGI48_RS07530 at 1603.583 kb on - strand at 1603.583 kb on - strand at 1603.717 kb on + strand, within HGI48_RS07530 at 1603.717 kb on + strand, within HGI48_RS07530 at 1603.717 kb on + strand at 1603.718 kb on - strand at 1603.718 kb on - strand, within HGI48_RS07530 at 1603.718 kb on - strand, within HGI48_RS07530 at 1603.718 kb on - strand at 1603.720 kb on + strand, within HGI48_RS07530 at 1603.720 kb on + strand, within HGI48_RS07530 at 1603.721 kb on - strand at 1603.721 kb on - strand, within HGI48_RS07530 at 1603.721 kb on - strand, within HGI48_RS07530 at 1603.721 kb on - strand, within HGI48_RS07530 at 1603.775 kb on - strand, within HGI48_RS07530 at 1603.775 kb on - strand at 1603.775 kb on - strand, within HGI48_RS07530 at 1603.812 kb on - strand at 1603.823 kb on + strand, within HGI48_RS07530 at 1603.823 kb on + strand, within HGI48_RS07530 at 1603.894 kb on + strand, within HGI48_RS07530 at 1603.928 kb on - strand, within HGI48_RS07530 at 1604.054 kb on + strand, within HGI48_RS07530 at 1604.054 kb on + strand at 1604.054 kb on + strand at 1604.055 kb on - strand, within HGI48_RS07530 at 1604.055 kb on - strand, within HGI48_RS07530 at 1604.055 kb on - strand, within HGI48_RS07530 at 1604.077 kb on + strand, within HGI48_RS07530 at 1604.078 kb on - strand, within HGI48_RS07530
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 1,600,811 + HGI48_RS07520 0.48 +0.5 1,600,908 + HGI48_RS07520 0.59 -2.3 1,601,040 + HGI48_RS07520 0.73 +1.3 1,601,040 + HGI48_RS07520 0.73 -0.1 1,601,113 - HGI48_RS07520 0.82 +1.4 1,601,113 - HGI48_RS07520 0.82 +0.0 1,601,223 + +0.5 1,601,223 + -0.0 1,601,223 + +0.3 1,601,388 - -1.1 1,601,534 + +0.9 1,601,534 + -1.2 1,601,534 + -1.0 1,601,534 + +0.5 1,601,535 - +0.2 1,601,567 + -0.3 1,601,592 - +0.8 1,601,619 + -1.5 1,601,624 - +1.7 1,601,624 - -1.1 1,601,778 + +2.1 1,601,779 - -2.1 1,601,812 + -0.3 1,601,812 + +0.1 1,601,812 + -1.1 1,601,812 + +0.3 1,601,813 - +0.0 1,601,821 - -1.3 1,601,996 + HGI48_RS07525 0.21 -1.3 1,601,996 + HGI48_RS07525 0.21 +0.5 1,601,996 + HGI48_RS07525 0.21 +0.7 1,601,997 - HGI48_RS07525 0.21 -1.9 1,601,997 - HGI48_RS07525 0.21 -1.5 1,601,997 - HGI48_RS07525 0.21 -2.1 1,601,997 - HGI48_RS07525 0.21 -1.7 1,602,145 - HGI48_RS07525 0.32 -1.5 1,602,145 - HGI48_RS07525 0.32 +0.2 1,602,346 - HGI48_RS07525 0.46 +0.5 1,602,795 - HGI48_RS07525 0.77 -1.3 1,603,045 + -0.5 1,603,046 - -0.2 1,603,046 - +2.9 1,603,119 + +0.2 1,603,119 + +1.0 1,603,120 - -0.7 1,603,120 - -0.8 1,603,135 - -0.5 1,603,149 - -0.5 1,603,185 + +1.5 1,603,186 - -1.0 1,603,186 - +0.3 1,603,186 - -0.4 1,603,186 - -0.1 1,603,291 - -1.0 1,603,292 + -0.1 1,603,292 + +1.5 1,603,309 - +0.6 1,603,339 + +0.0 1,603,340 - +1.4 1,603,427 - -1.1 1,603,429 + -1.5 1,603,430 - +1.1 1,603,482 + -0.9 1,603,482 + +1.5 1,603,485 + -1.9 1,603,486 - HGI48_RS07530 0.10 -1.3 1,603,490 - -0.1 1,603,494 + -1.1 1,603,582 + HGI48_RS07530 0.15 -1.3 1,603,583 - +1.5 1,603,583 - -0.1 1,603,717 + HGI48_RS07530 0.21 -0.2 1,603,717 + HGI48_RS07530 0.21 +0.2 1,603,717 + +1.9 1,603,718 - -1.1 1,603,718 - HGI48_RS07530 0.21 -0.1 1,603,718 - HGI48_RS07530 0.21 +0.1 1,603,718 - -0.1 1,603,720 + HGI48_RS07530 0.21 -1.5 1,603,720 + HGI48_RS07530 0.21 -1.9 1,603,721 - +0.5 1,603,721 - HGI48_RS07530 0.21 -0.9 1,603,721 - HGI48_RS07530 0.21 +0.8 1,603,721 - HGI48_RS07530 0.21 -0.0 1,603,775 - HGI48_RS07530 0.24 +1.5 1,603,775 - +0.5 1,603,775 - HGI48_RS07530 0.24 +0.5 1,603,812 - +2.1 1,603,823 + HGI48_RS07530 0.26 -0.5 1,603,823 + HGI48_RS07530 0.26 -0.3 1,603,894 + HGI48_RS07530 0.29 -1.9 1,603,928 - HGI48_RS07530 0.31 +0.2 1,604,054 + HGI48_RS07530 0.37 -0.3 1,604,054 + +0.5 1,604,054 + +0.5 1,604,055 - HGI48_RS07530 0.37 +0.6 1,604,055 - HGI48_RS07530 0.37 -1.3 1,604,055 - HGI48_RS07530 0.37 -0.5 1,604,077 + HGI48_RS07530 0.38 +0.5 1,604,078 - HGI48_RS07530 0.38 +0.9
Or see this region's nucleotide sequence