Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS07250

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,540,100	+		HGI48_RS07245	0.27	+0.2
1,540,101	-		HGI48_RS07245	0.27	-0.3
1,540,101	-		HGI48_RS07245	0.27	-0.5
1,540,333	+		HGI48_RS07245	0.49	+0.5
1,540,369	-		HGI48_RS07245	0.52	+0.5
1,540,587	+		HGI48_RS07245	0.72	-0.4
1,540,587	+		HGI48_RS07245	0.72	+0.1
1,540,587	+				+0.5
1,540,587	+		HGI48_RS07245	0.72	+1.0
1,540,587	+		HGI48_RS07245	0.72	-0.6
1,540,587	+		HGI48_RS07245	0.72	-0.3
1,540,587	+		HGI48_RS07245	0.72	-1.3
1,540,587	+		HGI48_RS07245	0.72	-0.1
1,540,587	+		HGI48_RS07245	0.72	-0.9
1,540,587	+		HGI48_RS07245	0.72	+2.0
1,540,588	-		HGI48_RS07245	0.72	-0.5
1,540,588	-				+0.5
1,540,588	-		HGI48_RS07245	0.72	+0.8
1,540,588	-		HGI48_RS07245	0.72	+0.1
1,540,588	-		HGI48_RS07245	0.72	+0.9
1,540,588	-		HGI48_RS07245	0.72	-3.8
1,540,588	-		HGI48_RS07245	0.72	-2.1
1,540,588	-				+0.9
1,540,588	-		HGI48_RS07245	0.72	-1.3
1,540,588	-				+1.5
1,540,588	-				+1.8
1,540,588	-		HGI48_RS07245	0.72	+2.5
1,540,588	-		HGI48_RS07245	0.72	-1.5
1,540,591	+				+1.9
1,540,591	+				+1.0
1,540,591	+				+0.5
1,540,592	-		HGI48_RS07245	0.73	-0.6
1,540,592	-		HGI48_RS07245	0.73	+0.3
1,540,592	-		HGI48_RS07245	0.73	-0.1
1,540,592	-		HGI48_RS07245	0.73	-0.1
1,540,629	+		HGI48_RS07245	0.76	+0.3
1,540,739	+		HGI48_RS07245	0.86	+1.5
1,540,739	+				-0.1
1,540,739	+		HGI48_RS07245	0.86	-0.3
1,540,740	-		HGI48_RS07245	0.86	-2.1
1,540,740	-		HGI48_RS07245	0.86	-1.0
1,540,829	+				+0.0
1,540,895	+				+0.7
1,540,908	+				-0.4
1,540,909	-				-1.5
1,540,909	-				+0.8
1,540,929	+				+0.2
1,540,929	+				-1.9
1,540,973	-				-0.8
1,541,005	+				+1.8
1,541,053	+		HGI48_RS07250	0.11	-1.3
1,541,053	+		HGI48_RS07250	0.11	+0.4
1,541,054	-		HGI48_RS07250	0.12	-2.5
1,541,155	-		HGI48_RS07250	0.26	+0.5
1,541,200	+		HGI48_RS07250	0.32	-0.4
1,541,200	+		HGI48_RS07250	0.32	-0.3
1,541,200	+		HGI48_RS07250	0.32	+0.5
1,541,200	+		HGI48_RS07250	0.32	+0.2
1,541,200	+		HGI48_RS07250	0.32	-1.3
1,541,200	+		HGI48_RS07250	0.32	+0.1
1,541,201	-		HGI48_RS07250	0.32	-1.7
1,541,201	-				+1.2
1,541,201	-		HGI48_RS07250	0.32	+0.5
1,541,201	-		HGI48_RS07250	0.32	+1.7
1,541,201	-		HGI48_RS07250	0.32	-0.1
1,541,201	-		HGI48_RS07250	0.32	-0.4
1,541,201	-		HGI48_RS07250	0.32	-0.8
1,541,201	-		HGI48_RS07250	0.32	-1.9
1,541,201	-		HGI48_RS07250	0.32	+0.3
1,541,206	+		HGI48_RS07250	0.33	+0.3
1,541,206	+		HGI48_RS07250	0.33	-0.3
1,541,206	+		HGI48_RS07250	0.33	-0.3
1,541,206	+		HGI48_RS07250	0.33	+1.3
1,541,206	+				-0.1
1,541,206	+		HGI48_RS07250	0.33	+0.1
1,541,206	+		HGI48_RS07250	0.33	-0.7
1,541,206	+		HGI48_RS07250	0.33	-1.0
1,541,206	+		HGI48_RS07250	0.33	-0.6
1,541,206	+		HGI48_RS07250	0.33	+0.9
1,541,207	-		HGI48_RS07250	0.33	+1.3
1,541,207	-		HGI48_RS07250	0.33	+0.6
1,541,207	-		HGI48_RS07250	0.33	-0.1
1,541,207	-		HGI48_RS07250	0.33	+0.3
1,541,207	-		HGI48_RS07250	0.33	-1.1
1,541,207	-		HGI48_RS07250	0.33	-0.4
1,541,207	-		HGI48_RS07250	0.33	-0.0
1,541,207	-		HGI48_RS07250	0.33	-0.5
1,541,207	-		HGI48_RS07250	0.33	+0.7
1,541,375	+		HGI48_RS07250	0.56	-0.8
1,541,375	+		HGI48_RS07250	0.56	+0.6
1,541,376	-		HGI48_RS07250	0.56	-1.7
1,541,376	-		HGI48_RS07250	0.56	+0.9
1,541,426	-		HGI48_RS07250	0.63	-0.3
1,541,459	+		HGI48_RS07250	0.68	+0.9
1,541,488	+				-0.5
1,541,488	+		HGI48_RS07250	0.72	+0.3
1,541,488	+		HGI48_RS07250	0.72	-0.3
1,541,488	+		HGI48_RS07250	0.72	-2.5
1,541,488	+		HGI48_RS07250	0.72	-0.9
1,541,488	+		HGI48_RS07250	0.72	+0.5
1,541,489	-		HGI48_RS07250	0.72	+0.7
1,541,489	-				+1.9
1,541,582	+		HGI48_RS07250	0.85	-0.4
1,541,582	+		HGI48_RS07250	0.85	-0.1
1,541,582	+		HGI48_RS07250	0.85	-1.7
1,541,583	-		HGI48_RS07250	0.85	+0.9
1,541,583	-		HGI48_RS07250	0.85	-0.4
1,541,777	-				+0.5
1,541,847	+				-0.9
1,541,870	-				-0.3
1,542,079	+		HGI48_RS07255	0.27	+1.7
1,542,112	+		HGI48_RS07255	0.31	+0.6
1,542,113	-		HGI48_RS07255	0.31	+0.2
1,542,113	-		HGI48_RS07255	0.31	+0.1
1,542,113	-		HGI48_RS07255	0.31	-1.9
1,542,125	+		HGI48_RS07255	0.32	+0.5
1,542,126	-				-0.5
1,542,126	-		HGI48_RS07255	0.32	+0.1
1,542,211	+		HGI48_RS07255	0.42	+0.6
1,542,274	-		HGI48_RS07255	0.49	-2.3
1,542,287	-		HGI48_RS07255	0.50	-0.0
1,542,322	-		HGI48_RS07255	0.54	-1.3
1,542,347	-		HGI48_RS07255	0.57	-1.0
1,542,417	+		HGI48_RS07255	0.65	+0.2
1,542,417	+		HGI48_RS07255	0.65	+0.1
1,542,417	+		HGI48_RS07255	0.65	+0.8
1,542,417	+		HGI48_RS07255	0.65	-0.2
1,542,418	-		HGI48_RS07255	0.65	-0.0
1,542,418	-		HGI48_RS07255	0.65	-1.3
1,542,422	-		HGI48_RS07255	0.65	-2.1
1,542,422	-		HGI48_RS07255	0.65	-0.1
1,542,436	+		HGI48_RS07255	0.67	-1.3
1,542,436	+		HGI48_RS07255	0.67	+0.1
1,542,437	-		HGI48_RS07255	0.67	+0.9
1,542,437	-		HGI48_RS07255	0.67	-0.3
1,542,532	-		HGI48_RS07255	0.78	+1.1
1,542,571	+		HGI48_RS07255	0.82	+0.9
1,542,649	+				-0.2
1,542,649	+				+0.1
1,542,649	+				-0.8
1,542,650	-				-0.2
1,542,675	+				+0.7
1,542,675	+				+0.1
1,542,676	-				-1.5
1,542,676	-				-0.3