Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS07115

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,509,292	-		HGI48_RS07110	0.28	-0.4
1,509,306	+		HGI48_RS07110	0.29	-0.9
1,509,307	-				-1.1
1,509,340	-		HGI48_RS07110	0.32	+0.0
1,509,340	-		HGI48_RS07110	0.32	-2.2
1,509,345	+		HGI48_RS07110	0.33	-0.5
1,509,346	-		HGI48_RS07110	0.33	+0.2
1,509,346	-		HGI48_RS07110	0.33	+0.5
1,509,367	-		HGI48_RS07110	0.35	+0.2
1,509,375	+		HGI48_RS07110	0.36	-2.7
1,509,375	+				-0.5
1,509,376	-		HGI48_RS07110	0.36	+0.9
1,509,380	-		HGI48_RS07110	0.36	+0.2
1,509,380	-		HGI48_RS07110	0.36	+0.9
1,509,380	-		HGI48_RS07110	0.36	-1.1
1,509,384	+		HGI48_RS07110	0.37	-0.3
1,509,385	-		HGI48_RS07110	0.37	-1.8
1,509,396	-		HGI48_RS07110	0.38	+1.2
1,509,399	+				+1.1
1,509,418	+		HGI48_RS07110	0.40	+1.4
1,509,418	+		HGI48_RS07110	0.40	-0.8
1,509,438	+		HGI48_RS07110	0.42	+0.2
1,509,438	+		HGI48_RS07110	0.42	-1.0
1,509,438	+				+1.5
1,509,438	+		HGI48_RS07110	0.42	-0.4
1,509,439	-		HGI48_RS07110	0.42	+0.0
1,509,497	+				+0.5
1,509,497	+		HGI48_RS07110	0.48	+0.7
1,509,498	-		HGI48_RS07110	0.48	+0.9
1,509,498	-		HGI48_RS07110	0.48	-1.3
1,509,517	+		HGI48_RS07110	0.50	-0.2
1,509,517	+		HGI48_RS07110	0.50	+0.9
1,509,517	+		HGI48_RS07110	0.50	+0.6
1,509,517	+		HGI48_RS07110	0.50	-2.0
1,509,518	-		HGI48_RS07110	0.50	-1.5
1,509,538	+		HGI48_RS07110	0.52	+0.3
1,509,541	+		HGI48_RS07110	0.52	-1.7
1,509,542	-		HGI48_RS07110	0.52	+0.0
1,509,542	-		HGI48_RS07110	0.52	-1.9
1,509,542	-		HGI48_RS07110	0.52	-0.2
1,509,573	+				+1.1
1,509,574	-		HGI48_RS07110	0.55	-0.3
1,509,574	-		HGI48_RS07110	0.55	-0.9
1,509,597	+		HGI48_RS07110	0.57	-0.4
1,509,643	+		HGI48_RS07110	0.62	-0.2
1,509,643	+		HGI48_RS07110	0.62	-1.8
1,509,643	+		HGI48_RS07110	0.62	-0.1
1,509,643	+				+1.7
1,509,643	+		HGI48_RS07110	0.62	+1.2
1,509,647	+		HGI48_RS07110	0.62	+0.0
1,509,647	+		HGI48_RS07110	0.62	-0.7
1,509,729	+		HGI48_RS07110	0.70	+0.7
1,509,729	+		HGI48_RS07110	0.70	-1.5
1,509,729	+				+1.5
1,509,729	+		HGI48_RS07110	0.70	+0.5
1,509,730	-		HGI48_RS07110	0.70	+0.2
1,509,802	+		HGI48_RS07110	0.77	-1.2
1,509,820	+		HGI48_RS07110	0.79	+0.7
1,509,821	-		HGI48_RS07110	0.79	-1.0
1,509,824	-		HGI48_RS07110	0.79	+1.2
1,509,835	+		HGI48_RS07110	0.80	-0.5
1,509,835	+				+3.0
1,509,899	+				+0.9
1,509,910	+		HGI48_RS07110	0.88	-0.8
1,509,910	+		HGI48_RS07110	0.88	-1.8
1,509,911	-		HGI48_RS07110	0.88	-0.3
1,509,911	-				+1.5
1,509,911	-		HGI48_RS07110	0.88	-1.1
1,509,911	-		HGI48_RS07110	0.88	+1.2
1,509,911	-		HGI48_RS07110	0.88	+0.3
1,509,953	+				-0.0
1,509,976	+				-2.5
1,509,976	+				-0.5
1,509,977	-				-0.2
1,509,977	-				-0.3
1,509,985	+				-1.5
1,509,985	+				-0.5
1,509,985	+				-0.2
1,509,986	-				-1.8
1,510,023	+				-0.4
1,510,024	-				-0.0
1,510,024	-				+0.5
1,510,024	-				-1.1
1,510,024	-				+1.4
1,510,035	+				+2.5
1,510,035	+				-0.2
1,510,036	-				-0.8
1,510,036	-				-1.5
1,510,036	-				+1.2
1,510,036	-				+0.6
1,510,036	-				+1.0
1,510,048	+				-0.8
1,510,186	+		HGI48_RS07115	0.62	+0.2
1,510,187	-				+0.5
1,510,187	-		HGI48_RS07115	0.62	-1.3
1,510,187	-		HGI48_RS07115	0.62	-1.8
1,510,208	+				+2.1
1,510,222	-		HGI48_RS07115	0.78	-3.1
1,510,653	+		HGI48_RS07120	0.52	+0.1
1,510,654	-		HGI48_RS07120	0.52	+0.1
1,510,655	+		HGI48_RS07120	0.52	-0.1
1,510,655	+		HGI48_RS07120	0.52	-1.5
1,510,656	-		HGI48_RS07120	0.52	-1.2
1,510,657	+		HGI48_RS07120	0.52	-0.7
1,510,657	+				+0.5
1,510,657	+		HGI48_RS07120	0.52	+0.9
1,510,658	-		HGI48_RS07120	0.52	-0.2
1,510,658	-				-1.1
1,510,658	-		HGI48_RS07120	0.52	-0.7
1,510,679	+		HGI48_RS07120	0.55	-1.3
1,510,680	-		HGI48_RS07120	0.56	+0.2
1,510,680	-		HGI48_RS07120	0.56	-0.2
1,510,719	+		HGI48_RS07120	0.61	-1.1
1,510,719	+		HGI48_RS07120	0.61	-0.8
1,510,821	+		HGI48_RS07120	0.75	+0.7
1,510,821	+				+2.5
1,510,822	-		HGI48_RS07120	0.75	-2.7
1,510,823	+		HGI48_RS07120	0.75	-1.5
1,510,823	+		HGI48_RS07120	0.75	+1.1
1,510,823	+		HGI48_RS07120	0.75	-1.5
1,510,842	+		HGI48_RS07120	0.78	+0.2
1,510,842	+		HGI48_RS07120	0.78	-0.3
1,510,842	+		HGI48_RS07120	0.78	-0.1
1,510,842	+		HGI48_RS07120	0.78	-0.5
1,510,843	-		HGI48_RS07120	0.78	-0.5
1,510,843	-		HGI48_RS07120	0.78	+0.5
1,510,843	-		HGI48_RS07120	0.78	-0.8
1,510,843	-		HGI48_RS07120	0.78	+0.1
1,510,843	-		HGI48_RS07120	0.78	-0.9
1,510,844	+		HGI48_RS07120	0.78	+0.2
1,510,845	-		HGI48_RS07120	0.79	+0.1
1,510,845	-				-0.1
1,511,070	+				-0.5
1,511,070	+				+0.5
1,511,070	+				-0.6
1,511,070	+				-0.5
1,511,070	+				-2.5
1,511,070	+				+0.8
1,511,070	+				-0.2
1,511,070	+				+0.3
1,511,070	+				+0.5
1,511,070	+				-1.0
1,511,070	+				-0.1
1,511,071	-				-1.3
1,511,071	-				+0.5
1,511,071	-				+0.2
1,511,071	-				-0.9
1,511,071	-				-1.1
1,511,223	+				-1.5
1,511,223	+				-1.8
1,511,223	+				-1.8
1,511,224	-				-1.5
1,511,224	-				+0.6
1,511,224	-				-1.5
1,511,224	-				-0.8
1,511,224	-				-1.5
1,511,224	-				-0.4
1,511,224	-				-2.5
1,511,224	-				-2.3
1,511,225	+				-0.1
1,511,225	+				+0.2
1,511,225	+				-1.3
1,511,225	+				+0.6
1,511,225	+				-1.5
1,511,225	+				+1.1
1,511,225	+				+0.5
1,511,226	-				-0.1
1,511,226	-				-0.3
1,511,226	-				-0.6
1,511,226	-				+0.0
1,511,226	-				+1.1
1,511,226	-				-1.1
1,511,226	-				-0.6
1,511,226	-				-1.1
1,511,261	+				-0.3
1,511,262	-				-1.1