Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS07050

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,493,312	-		HGI48_RS07040	0.47	+0.9
1,493,338	+		HGI48_RS07040	0.51	-1.4
1,493,339	-		HGI48_RS07040	0.51	+0.2
1,493,390	+		HGI48_RS07040	0.59	-1.5
1,493,391	-		HGI48_RS07040	0.59	+0.5
1,493,400	+		HGI48_RS07040	0.60	+1.5
1,493,401	-				+2.1
1,493,447	+		HGI48_RS07040	0.67	+0.1
1,493,447	+		HGI48_RS07040	0.67	-2.0
1,493,447	+		HGI48_RS07040	0.67	-1.8
1,493,448	-		HGI48_RS07040	0.67	-2.1
1,493,448	-		HGI48_RS07040	0.67	+0.1
1,493,449	+		HGI48_RS07040	0.67	-0.1
1,493,450	-		HGI48_RS07040	0.67	+1.3
1,493,473	+		HGI48_RS07040	0.71	-0.6
1,493,473	+		HGI48_RS07040	0.71	-2.3
1,493,513	+		HGI48_RS07040	0.77	-0.8
1,493,514	-		HGI48_RS07040	0.77	-0.8
1,493,514	-				-1.1
1,493,514	-		HGI48_RS07040	0.77	-2.1
1,493,514	-		HGI48_RS07040	0.77	+0.1
1,493,546	-		HGI48_RS07040	0.81	-1.7
1,493,588	-		HGI48_RS07040	0.87	-0.6
1,493,603	-				-0.5
1,493,605	+		HGI48_RS07040	0.90	+1.5
1,493,605	+		HGI48_RS07040	0.90	+0.8
1,493,606	-				-0.4
1,493,695	+				-0.2
1,493,696	-				-0.1
1,493,696	-				+0.2
1,493,712	-				-0.3
1,493,729	+				-0.2
1,493,730	-				-0.7
1,493,734	+				+1.1
1,493,738	+				-0.0
1,493,739	-				-1.5
1,493,807	+				-0.8
1,493,808	-				-0.7
1,493,925	+				+0.2
1,493,925	+				-1.2
1,493,925	+				-1.5
1,493,925	+				+0.5
1,493,925	+				-1.8
1,493,926	-				+0.8
1,493,926	-				-0.5
1,493,926	-				+0.5
1,494,004	-		HGI48_RS07045	0.34	-0.5
1,494,004	-				+2.3
1,494,005	+		HGI48_RS07045	0.34	-2.3
1,494,005	+		HGI48_RS07045	0.34	+0.1
1,494,005	+		HGI48_RS07045	0.34	+0.2
1,494,005	+		HGI48_RS07045	0.34	+0.0
1,494,006	-		HGI48_RS07045	0.34	-1.0
1,494,006	-		HGI48_RS07045	0.34	+0.3
1,494,006	-		HGI48_RS07045	0.34	-0.8
1,494,006	-		HGI48_RS07045	0.34	-2.3
1,494,006	-		HGI48_RS07045	0.34	-0.1
1,494,010	+		HGI48_RS07045	0.36	-1.8
1,494,010	+		HGI48_RS07045	0.36	-1.3
1,494,010	+		HGI48_RS07045	0.36	-2.1
1,494,011	-		HGI48_RS07045	0.36	+1.2
1,494,011	-		HGI48_RS07045	0.36	+1.0
1,494,011	-		HGI48_RS07045	0.36	-0.5
1,494,011	-		HGI48_RS07045	0.36	-1.1
1,494,011	-		HGI48_RS07045	0.36	+0.3
1,494,011	-		HGI48_RS07045	0.36	-1.7
1,494,011	-		HGI48_RS07045	0.36	-0.9
1,494,112	-		HGI48_RS07045	0.73	+1.0
1,494,213	-				-1.1
1,494,298	+				-3.6
1,494,299	-				+2.1
1,494,311	-				+0.4
1,494,494	-		HGI48_RS07050	0.16	-3.3
1,494,528	+		HGI48_RS07050	0.19	+1.4
1,494,528	+		HGI48_RS07050	0.19	+0.5
1,494,528	+		HGI48_RS07050	0.19	-1.5
1,494,532	+		HGI48_RS07050	0.19	+0.1
1,494,532	+		HGI48_RS07050	0.19	-0.6
1,494,532	+		HGI48_RS07050	0.19	+0.4
1,494,532	+		HGI48_RS07050	0.19	-0.5
1,494,595	-		HGI48_RS07050	0.24	+0.5
1,494,595	-		HGI48_RS07050	0.24	-2.8
1,494,595	-		HGI48_RS07050	0.24	-2.5
1,494,599	-		HGI48_RS07050	0.25	-1.1
1,494,640	+		HGI48_RS07050	0.28	-0.3
1,494,663	+				+1.1
1,494,708	+		HGI48_RS07050	0.33	+0.0
1,494,708	+		HGI48_RS07050	0.33	-1.3
1,494,718	-		HGI48_RS07050	0.34	+0.4
1,494,718	-		HGI48_RS07050	0.34	+1.0
1,494,728	+		HGI48_RS07050	0.35	-0.1
1,494,782	+		HGI48_RS07050	0.39	+0.1
1,494,782	+		HGI48_RS07050	0.39	+1.3
1,494,823	+		HGI48_RS07050	0.43	-2.0
1,494,824	-		HGI48_RS07050	0.43	-0.3
1,494,824	-		HGI48_RS07050	0.43	-1.0
1,494,824	-		HGI48_RS07050	0.43	-0.5
1,494,880	+		HGI48_RS07050	0.47	-1.5
1,494,880	+		HGI48_RS07050	0.47	+0.5
1,494,881	-		HGI48_RS07050	0.47	-0.5
1,494,881	-		HGI48_RS07050	0.47	-0.7
1,494,881	-		HGI48_RS07050	0.47	+0.5
1,494,883	+		HGI48_RS07050	0.47	-0.1
1,494,883	+		HGI48_RS07050	0.47	-0.4
1,494,883	+		HGI48_RS07050	0.47	-0.3
1,494,883	+		HGI48_RS07050	0.47	-0.2
1,494,883	+		HGI48_RS07050	0.47	+0.5
1,494,883	+		HGI48_RS07050	0.47	-0.7
1,494,884	-		HGI48_RS07050	0.47	-0.2
1,494,945	-		HGI48_RS07050	0.52	+0.3
1,494,947	-		HGI48_RS07050	0.53	-1.5
1,494,971	+		HGI48_RS07050	0.54	-0.0
1,494,972	-		HGI48_RS07050	0.55	-0.2
1,494,972	-		HGI48_RS07050	0.55	+0.5
1,494,972	-		HGI48_RS07050	0.55	-0.3
1,494,972	-		HGI48_RS07050	0.55	+1.6
1,494,972	-		HGI48_RS07050	0.55	-1.5
1,495,041	+		HGI48_RS07050	0.60	+1.7
1,495,055	+		HGI48_RS07050	0.61	-2.1
1,495,110	+				-1.1
1,495,137	+		HGI48_RS07050	0.68	-1.3
1,495,137	+		HGI48_RS07050	0.68	+0.5
1,495,138	-		HGI48_RS07050	0.68	-1.9
1,495,138	-		HGI48_RS07050	0.68	-0.5
1,495,142	-		HGI48_RS07050	0.68	-0.7
1,495,142	-		HGI48_RS07050	0.68	+0.5
1,495,142	-		HGI48_RS07050	0.68	+0.8
1,495,174	+		HGI48_RS07050	0.71	-0.1
1,495,175	-		HGI48_RS07050	0.71	-0.2
1,495,179	+		HGI48_RS07050	0.71	-0.4
1,495,179	+		HGI48_RS07050	0.71	+0.2
1,495,180	-		HGI48_RS07050	0.71	+1.1
1,495,226	+		HGI48_RS07050	0.75	-0.8
1,495,246	+		HGI48_RS07050	0.77	+0.3
1,495,247	-				-1.1
1,495,279	+		HGI48_RS07050	0.79	-0.4
1,495,287	-		HGI48_RS07050	0.80	-2.1
1,495,322	+		HGI48_RS07050	0.83	-0.5
1,495,322	+		HGI48_RS07050	0.83	+1.2
1,495,323	-		HGI48_RS07050	0.83	+0.7
1,495,323	-		HGI48_RS07050	0.83	-0.6
1,495,385	+		HGI48_RS07050	0.88	-1.1
1,495,385	+		HGI48_RS07050	0.88	+0.5
1,495,386	-		HGI48_RS07050	0.88	-0.3
1,495,386	-		HGI48_RS07050	0.88	+0.9
1,495,386	-		HGI48_RS07050	0.88	-0.0
1,495,395	-		HGI48_RS07050	0.89	+1.1
1,495,395	-		HGI48_RS07050	0.89	+0.1
1,495,396	+				+0.5
1,495,396	+		HGI48_RS07050	0.89	-1.5
1,495,397	-		HGI48_RS07050	0.89	-1.5
1,495,450	-				-0.1
1,495,450	-				+0.5
1,495,450	-				+1.9
1,495,522	-				+0.1
1,495,569	+				-0.5
1,495,570	-				+0.8
1,495,574	-				-1.1
1,495,574	-				-0.9
1,495,581	-				+0.2
1,495,581	-				-1.5
1,495,584	-				+0.5
1,496,077	-		HGI48_RS07055	0.42	-2.3
1,496,375	-		HGI48_RS07055	0.71	-0.2
1,496,375	-		HGI48_RS07055	0.71	+1.1
1,496,375	-		HGI48_RS07055	0.71	-0.8