Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS05995 and HGI48_RS06000 are separated by 57 nucleotides HGI48_RS06000 and HGI48_RS06005 are separated by 62 nucleotides HGI48_RS06005 and HGI48_RS06010 are separated by 145 nucleotides HGI48_RS06010 and HGI48_RS06015 overlap by 33 nucleotides
HGI48_RS05995: HGI48_RS05995 - nicotinamide mononucleotide deamidase-related protein YfaY, at 1,276,186 to 1,277,379
_RS05995
HGI48_RS06000: HGI48_RS06000 - co-chaperone YbbN, at 1,277,437 to 1,278,297
_RS06000
HGI48_RS06005: HGI48_RS06005 - SDR family oxidoreductase, at 1,278,360 to 1,279,136
_RS06005
HGI48_RS06010: HGI48_RS06010 - multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1, at 1,279,282 to 1,279,923
_RS06010
HGI48_RS06015: HGI48_RS06015 - ABC transporter ATP-binding protein, at 1,279,891 to 1,280,577
_RS06015
Position (kb)
1278
1279
1280 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1277.377 kb on + strand at 1277.453 kb on + strand at 1277.453 kb on + strand at 1277.512 kb on - strand at 1277.614 kb on + strand, within HGI48_RS06000 at 1277.614 kb on + strand, within HGI48_RS06000 at 1277.614 kb on + strand, within HGI48_RS06000 at 1277.614 kb on + strand, within HGI48_RS06000 at 1277.615 kb on - strand at 1277.615 kb on - strand at 1277.615 kb on - strand, within HGI48_RS06000 at 1277.615 kb on - strand, within HGI48_RS06000 at 1277.856 kb on + strand, within HGI48_RS06000 at 1277.959 kb on - strand, within HGI48_RS06000 at 1278.047 kb on + strand, within HGI48_RS06000 at 1278.048 kb on - strand, within HGI48_RS06000 at 1278.123 kb on + strand, within HGI48_RS06000 at 1278.206 kb on + strand, within HGI48_RS06000 at 1278.206 kb on + strand, within HGI48_RS06000 at 1278.206 kb on + strand, within HGI48_RS06000 at 1278.206 kb on + strand, within HGI48_RS06000 at 1278.207 kb on - strand, within HGI48_RS06000 at 1278.267 kb on + strand at 1278.292 kb on + strand at 1278.292 kb on + strand at 1278.292 kb on + strand at 1278.293 kb on - strand at 1278.293 kb on - strand at 1278.293 kb on - strand at 1278.293 kb on - strand at 1278.417 kb on + strand at 1278.417 kb on + strand at 1278.417 kb on + strand at 1278.418 kb on - strand at 1278.499 kb on - strand, within HGI48_RS06005 at 1278.624 kb on + strand, within HGI48_RS06005 at 1278.624 kb on + strand, within HGI48_RS06005 at 1278.625 kb on - strand, within HGI48_RS06005 at 1278.685 kb on + strand, within HGI48_RS06005 at 1278.878 kb on - strand, within HGI48_RS06005 at 1278.942 kb on - strand, within HGI48_RS06005 at 1279.136 kb on + strand at 1279.142 kb on + strand at 1279.164 kb on - strand at 1279.183 kb on + strand at 1279.183 kb on + strand at 1279.183 kb on + strand at 1279.183 kb on + strand at 1279.184 kb on - strand at 1279.184 kb on - strand at 1279.201 kb on + strand at 1279.217 kb on - strand at 1279.223 kb on - strand at 1279.269 kb on + strand at 1279.270 kb on - strand at 1279.270 kb on - strand at 1279.270 kb on - strand at 1279.276 kb on + strand at 1279.276 kb on + strand at 1279.276 kb on + strand at 1279.276 kb on + strand at 1279.276 kb on + strand at 1279.276 kb on + strand at 1279.277 kb on - strand at 1279.283 kb on + strand at 1279.283 kb on + strand at 1279.283 kb on + strand at 1279.283 kb on + strand at 1279.283 kb on + strand at 1279.284 kb on - strand at 1279.284 kb on - strand at 1279.394 kb on + strand, within HGI48_RS06010 at 1279.395 kb on - strand, within HGI48_RS06010 at 1279.395 kb on - strand, within HGI48_RS06010 at 1279.395 kb on - strand, within HGI48_RS06010 at 1279.478 kb on + strand, within HGI48_RS06010 at 1279.490 kb on + strand at 1279.491 kb on - strand, within HGI48_RS06010 at 1279.491 kb on - strand at 1279.551 kb on + strand, within HGI48_RS06010 at 1279.551 kb on + strand, within HGI48_RS06010 at 1279.795 kb on - strand, within HGI48_RS06010 at 1279.795 kb on - strand, within HGI48_RS06010 at 1279.811 kb on - strand, within HGI48_RS06010 at 1279.837 kb on - strand, within HGI48_RS06010 at 1279.926 kb on + strand at 1279.927 kb on - strand at 1279.927 kb on - strand at 1279.929 kb on + strand at 1279.929 kb on + strand at 1279.930 kb on - strand at 1279.930 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 1,277,377 + +0.5 1,277,453 + -2.1 1,277,453 + +0.2 1,277,512 - -0.7 1,277,614 + HGI48_RS06000 0.21 -1.8 1,277,614 + HGI48_RS06000 0.21 -3.3 1,277,614 + HGI48_RS06000 0.21 +1.3 1,277,614 + HGI48_RS06000 0.21 +0.7 1,277,615 - +1.5 1,277,615 - +2.1 1,277,615 - HGI48_RS06000 0.21 -0.1 1,277,615 - HGI48_RS06000 0.21 -1.9 1,277,856 + HGI48_RS06000 0.49 -0.3 1,277,959 - HGI48_RS06000 0.61 -0.8 1,278,047 + HGI48_RS06000 0.71 +0.8 1,278,048 - HGI48_RS06000 0.71 -1.5 1,278,123 + HGI48_RS06000 0.80 -2.2 1,278,206 + HGI48_RS06000 0.89 -0.4 1,278,206 + HGI48_RS06000 0.89 -0.1 1,278,206 + HGI48_RS06000 0.89 +0.1 1,278,206 + HGI48_RS06000 0.89 +0.7 1,278,207 - HGI48_RS06000 0.89 +0.5 1,278,267 + +0.9 1,278,292 + -0.8 1,278,292 + -0.5 1,278,292 + -0.8 1,278,293 - -1.1 1,278,293 - +1.5 1,278,293 - -1.1 1,278,293 - -0.5 1,278,417 + -1.3 1,278,417 + -0.8 1,278,417 + -0.9 1,278,418 - +2.1 1,278,499 - HGI48_RS06005 0.18 -2.5 1,278,624 + HGI48_RS06005 0.34 -1.3 1,278,624 + HGI48_RS06005 0.34 +0.0 1,278,625 - HGI48_RS06005 0.34 -0.4 1,278,685 + HGI48_RS06005 0.42 -1.7 1,278,878 - HGI48_RS06005 0.67 -1.2 1,278,942 - HGI48_RS06005 0.75 +0.4 1,279,136 + -1.8 1,279,142 + -0.3 1,279,164 - -0.5 1,279,183 + -1.3 1,279,183 + -1.5 1,279,183 + -3.2 1,279,183 + -1.4 1,279,184 - -0.2 1,279,184 - -0.1 1,279,201 + -0.9 1,279,217 - -0.2 1,279,223 - -1.1 1,279,269 + +0.8 1,279,270 - -1.1 1,279,270 - +0.5 1,279,270 - -0.5 1,279,276 + -0.5 1,279,276 + -0.1 1,279,276 + +0.9 1,279,276 + -2.5 1,279,276 + -0.4 1,279,276 + -2.3 1,279,277 - +1.2 1,279,283 + -0.1 1,279,283 + +0.1 1,279,283 + -0.3 1,279,283 + +0.3 1,279,283 + -1.8 1,279,284 - -1.1 1,279,284 - -0.5 1,279,394 + HGI48_RS06010 0.17 +0.1 1,279,395 - HGI48_RS06010 0.18 -0.3 1,279,395 - HGI48_RS06010 0.18 +0.5 1,279,395 - HGI48_RS06010 0.18 +1.4 1,279,478 + HGI48_RS06010 0.31 -1.6 1,279,490 + +3.1 1,279,491 - HGI48_RS06010 0.33 +0.8 1,279,491 - +0.5 1,279,551 + HGI48_RS06010 0.42 -1.8 1,279,551 + HGI48_RS06010 0.42 -0.2 1,279,795 - HGI48_RS06010 0.80 -0.5 1,279,795 - HGI48_RS06010 0.80 +0.5 1,279,811 - HGI48_RS06010 0.82 +0.9 1,279,837 - HGI48_RS06010 0.86 -1.3 1,279,926 + -0.2 1,279,927 - -0.6 1,279,927 - -1.1 1,279,929 + -0.2 1,279,929 + -1.7 1,279,930 - +0.3 1,279,930 - -0.6
Or see this region's nucleotide sequence