Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS06005

Experiment: PDB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS05995 and HGI48_RS06000 are separated by 57 nucleotidesHGI48_RS06000 and HGI48_RS06005 are separated by 62 nucleotidesHGI48_RS06005 and HGI48_RS06010 are separated by 145 nucleotidesHGI48_RS06010 and HGI48_RS06015 overlap by 33 nucleotides HGI48_RS05995: HGI48_RS05995 - nicotinamide mononucleotide deamidase-related protein YfaY, at 1,276,186 to 1,277,379 _RS05995 HGI48_RS06000: HGI48_RS06000 - co-chaperone YbbN, at 1,277,437 to 1,278,297 _RS06000 HGI48_RS06005: HGI48_RS06005 - SDR family oxidoreductase, at 1,278,360 to 1,279,136 _RS06005 HGI48_RS06010: HGI48_RS06010 - multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1, at 1,279,282 to 1,279,923 _RS06010 HGI48_RS06015: HGI48_RS06015 - ABC transporter ATP-binding protein, at 1,279,891 to 1,280,577 _RS06015 Position (kb) 1278 1279 1280Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1277.377 kb on + strandat 1277.453 kb on + strandat 1277.453 kb on + strandat 1277.512 kb on - strandat 1277.614 kb on + strand, within HGI48_RS06000at 1277.614 kb on + strand, within HGI48_RS06000at 1277.614 kb on + strand, within HGI48_RS06000at 1277.614 kb on + strand, within HGI48_RS06000at 1277.615 kb on - strandat 1277.615 kb on - strandat 1277.615 kb on - strand, within HGI48_RS06000at 1277.615 kb on - strand, within HGI48_RS06000at 1277.856 kb on + strand, within HGI48_RS06000at 1277.959 kb on - strand, within HGI48_RS06000at 1278.047 kb on + strand, within HGI48_RS06000at 1278.048 kb on - strand, within HGI48_RS06000at 1278.123 kb on + strand, within HGI48_RS06000at 1278.206 kb on + strand, within HGI48_RS06000at 1278.206 kb on + strand, within HGI48_RS06000at 1278.206 kb on + strand, within HGI48_RS06000at 1278.206 kb on + strand, within HGI48_RS06000at 1278.207 kb on - strand, within HGI48_RS06000at 1278.267 kb on + strandat 1278.292 kb on + strandat 1278.292 kb on + strandat 1278.292 kb on + strandat 1278.293 kb on - strandat 1278.293 kb on - strandat 1278.293 kb on - strandat 1278.293 kb on - strandat 1278.417 kb on + strandat 1278.417 kb on + strandat 1278.417 kb on + strandat 1278.418 kb on - strandat 1278.499 kb on - strand, within HGI48_RS06005at 1278.624 kb on + strand, within HGI48_RS06005at 1278.624 kb on + strand, within HGI48_RS06005at 1278.625 kb on - strand, within HGI48_RS06005at 1278.685 kb on + strand, within HGI48_RS06005at 1278.878 kb on - strand, within HGI48_RS06005at 1278.942 kb on - strand, within HGI48_RS06005at 1279.136 kb on + strandat 1279.142 kb on + strandat 1279.164 kb on - strandat 1279.183 kb on + strandat 1279.183 kb on + strandat 1279.183 kb on + strandat 1279.183 kb on + strandat 1279.184 kb on - strandat 1279.184 kb on - strandat 1279.201 kb on + strandat 1279.217 kb on - strandat 1279.223 kb on - strandat 1279.269 kb on + strandat 1279.270 kb on - strandat 1279.270 kb on - strandat 1279.270 kb on - strandat 1279.276 kb on + strandat 1279.276 kb on + strandat 1279.276 kb on + strandat 1279.276 kb on + strandat 1279.276 kb on + strandat 1279.276 kb on + strandat 1279.277 kb on - strandat 1279.283 kb on + strandat 1279.283 kb on + strandat 1279.283 kb on + strandat 1279.283 kb on + strandat 1279.283 kb on + strandat 1279.284 kb on - strandat 1279.284 kb on - strandat 1279.394 kb on + strand, within HGI48_RS06010at 1279.395 kb on - strand, within HGI48_RS06010at 1279.395 kb on - strand, within HGI48_RS06010at 1279.395 kb on - strand, within HGI48_RS06010at 1279.478 kb on + strand, within HGI48_RS06010at 1279.490 kb on + strandat 1279.491 kb on - strand, within HGI48_RS06010at 1279.491 kb on - strandat 1279.551 kb on + strand, within HGI48_RS06010at 1279.551 kb on + strand, within HGI48_RS06010at 1279.795 kb on - strand, within HGI48_RS06010at 1279.795 kb on - strand, within HGI48_RS06010at 1279.811 kb on - strand, within HGI48_RS06010at 1279.837 kb on - strand, within HGI48_RS06010at 1279.926 kb on + strandat 1279.927 kb on - strandat 1279.927 kb on - strandat 1279.929 kb on + strandat 1279.929 kb on + strandat 1279.930 kb on - strandat 1279.930 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PDB
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1,277,377 + +0.5
1,277,453 + -2.1
1,277,453 + +0.2
1,277,512 - -0.7
1,277,614 + HGI48_RS06000 0.21 -1.8
1,277,614 + HGI48_RS06000 0.21 -3.3
1,277,614 + HGI48_RS06000 0.21 +1.3
1,277,614 + HGI48_RS06000 0.21 +0.7
1,277,615 - +1.5
1,277,615 - +2.1
1,277,615 - HGI48_RS06000 0.21 -0.1
1,277,615 - HGI48_RS06000 0.21 -1.9
1,277,856 + HGI48_RS06000 0.49 -0.3
1,277,959 - HGI48_RS06000 0.61 -0.8
1,278,047 + HGI48_RS06000 0.71 +0.8
1,278,048 - HGI48_RS06000 0.71 -1.5
1,278,123 + HGI48_RS06000 0.80 -2.2
1,278,206 + HGI48_RS06000 0.89 -0.4
1,278,206 + HGI48_RS06000 0.89 -0.1
1,278,206 + HGI48_RS06000 0.89 +0.1
1,278,206 + HGI48_RS06000 0.89 +0.7
1,278,207 - HGI48_RS06000 0.89 +0.5
1,278,267 + +0.9
1,278,292 + -0.8
1,278,292 + -0.5
1,278,292 + -0.8
1,278,293 - -1.1
1,278,293 - +1.5
1,278,293 - -1.1
1,278,293 - -0.5
1,278,417 + -1.3
1,278,417 + -0.8
1,278,417 + -0.9
1,278,418 - +2.1
1,278,499 - HGI48_RS06005 0.18 -2.5
1,278,624 + HGI48_RS06005 0.34 -1.3
1,278,624 + HGI48_RS06005 0.34 +0.0
1,278,625 - HGI48_RS06005 0.34 -0.4
1,278,685 + HGI48_RS06005 0.42 -1.7
1,278,878 - HGI48_RS06005 0.67 -1.2
1,278,942 - HGI48_RS06005 0.75 +0.4
1,279,136 + -1.8
1,279,142 + -0.3
1,279,164 - -0.5
1,279,183 + -1.3
1,279,183 + -1.5
1,279,183 + -3.2
1,279,183 + -1.4
1,279,184 - -0.2
1,279,184 - -0.1
1,279,201 + -0.9
1,279,217 - -0.2
1,279,223 - -1.1
1,279,269 + +0.8
1,279,270 - -1.1
1,279,270 - +0.5
1,279,270 - -0.5
1,279,276 + -0.5
1,279,276 + -0.1
1,279,276 + +0.9
1,279,276 + -2.5
1,279,276 + -0.4
1,279,276 + -2.3
1,279,277 - +1.2
1,279,283 + -0.1
1,279,283 + +0.1
1,279,283 + -0.3
1,279,283 + +0.3
1,279,283 + -1.8
1,279,284 - -1.1
1,279,284 - -0.5
1,279,394 + HGI48_RS06010 0.17 +0.1
1,279,395 - HGI48_RS06010 0.18 -0.3
1,279,395 - HGI48_RS06010 0.18 +0.5
1,279,395 - HGI48_RS06010 0.18 +1.4
1,279,478 + HGI48_RS06010 0.31 -1.6
1,279,490 + +3.1
1,279,491 - HGI48_RS06010 0.33 +0.8
1,279,491 - +0.5
1,279,551 + HGI48_RS06010 0.42 -1.8
1,279,551 + HGI48_RS06010 0.42 -0.2
1,279,795 - HGI48_RS06010 0.80 -0.5
1,279,795 - HGI48_RS06010 0.80 +0.5
1,279,811 - HGI48_RS06010 0.82 +0.9
1,279,837 - HGI48_RS06010 0.86 -1.3
1,279,926 + -0.2
1,279,927 - -0.6
1,279,927 - -1.1
1,279,929 + -0.2
1,279,929 + -1.7
1,279,930 - +0.3
1,279,930 - -0.6

Or see this region's nucleotide sequence