Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS05695

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,199,355	+		HGI48_RS05690	0.43	-1.4
1,199,356	-		HGI48_RS05690	0.43	-0.4
1,199,938	+		HGI48_RS05690	0.88	-1.8
1,200,174	+				+0.6
1,200,175	-				-0.0
1,200,175	-				-2.4
1,200,178	+				+0.9
1,200,187	-				+0.6
1,200,187	-				-1.8
1,200,188	+				+0.8
1,200,188	+				+0.6
1,200,196	+				+0.0
1,200,200	+				-1.1
1,200,201	-				+0.6
1,200,202	+				+1.7
1,200,261	+				+1.7
1,200,261	+				+3.0
1,200,275	-				-0.2
1,200,300	+				+1.7
1,200,301	-				-1.6
1,200,313	-				-1.8
1,200,503	-				+1.2
1,200,693	+		HGI48_RS05695	0.18	+1.1
1,200,695	+		HGI48_RS05695	0.18	+0.8
1,200,696	-		HGI48_RS05695	0.18	+0.4
1,200,729	+		HGI48_RS05695	0.19	+2.6
1,200,730	-		HGI48_RS05695	0.19	+0.6
1,200,742	+		HGI48_RS05695	0.20	+1.0
1,200,748	+		HGI48_RS05695	0.20	+1.0
1,200,894	+		HGI48_RS05695	0.26	+1.7
1,200,960	-		HGI48_RS05695	0.29	+0.8
1,201,111	+		HGI48_RS05695	0.35	+0.9
1,201,154	+		HGI48_RS05695	0.37	+1.6
1,201,155	-		HGI48_RS05695	0.37	+1.2
1,201,155	-		HGI48_RS05695	0.37	-1.4
1,201,155	-		HGI48_RS05695	0.37	+1.3
1,201,177	-				+2.7
1,201,274	-		HGI48_RS05695	0.42	+3.6
1,201,274	-		HGI48_RS05695	0.42	-0.4
1,201,399	+		HGI48_RS05695	0.48	+0.1
1,201,403	+		HGI48_RS05695	0.48	+1.8
1,201,403	+				+2.4
1,201,403	+		HGI48_RS05695	0.48	+0.6
1,201,404	-		HGI48_RS05695	0.48	-1.2
1,201,404	-		HGI48_RS05695	0.48	+1.8
1,201,404	-		HGI48_RS05695	0.48	+1.8
1,201,466	+		HGI48_RS05695	0.50	+2.5
1,201,466	+		HGI48_RS05695	0.50	+1.2
1,201,467	-		HGI48_RS05695	0.50	+0.3
1,201,467	-		HGI48_RS05695	0.50	-0.7
1,201,467	-		HGI48_RS05695	0.50	-2.0
1,201,467	-		HGI48_RS05695	0.50	+0.7
1,201,640	+		HGI48_RS05695	0.58	-0.7
1,201,656	-		HGI48_RS05695	0.58	+1.6
1,201,656	-		HGI48_RS05695	0.58	-0.7
1,201,754	-		HGI48_RS05695	0.63	+1.8
1,201,874	+				+1.0
1,201,877	+		HGI48_RS05695	0.68	+1.6
1,201,878	-		HGI48_RS05695	0.68	+1.2
1,201,878	-		HGI48_RS05695	0.68	-1.4
1,201,878	-		HGI48_RS05695	0.68	+2.2
1,201,934	-		HGI48_RS05695	0.70	+0.2
1,201,975	+				+2.1
1,201,976	-		HGI48_RS05695	0.72	-1.4
1,201,976	-		HGI48_RS05695	0.72	+2.2
1,202,007	-		HGI48_RS05695	0.73	+0.1
1,202,007	-		HGI48_RS05695	0.73	+1.2
1,202,007	-		HGI48_RS05695	0.73	+1.1
1,202,007	-		HGI48_RS05695	0.73	-0.8
1,202,007	-				+4.6
1,202,010	+		HGI48_RS05695	0.73	-1.0
1,202,011	-		HGI48_RS05695	0.73	+0.7
1,202,011	-				+3.1
1,202,150	+		HGI48_RS05695	0.79	+2.6
1,202,150	+		HGI48_RS05695	0.79	+1.3
1,202,151	-		HGI48_RS05695	0.79	-1.2
1,202,151	-		HGI48_RS05695	0.79	+1.8
1,202,151	-		HGI48_RS05695	0.79	+0.1
1,202,526	+				-0.4
1,202,527	-				+1.1
1,202,527	-				-1.0
1,202,575	+				+1.7
1,202,575	+				-2.4
1,202,575	+				+1.8
1,202,576	-				+1.8
1,202,576	-				-1.4
1,202,578	+				+1.5
1,202,579	-				+0.8
1,202,636	+				+1.6
1,202,716	-				-0.7
1,202,721	-				-1.4
1,202,752	+				-0.9
1,202,771	+				-2.2
1,202,777	+				+0.1
1,202,777	+				-0.0
1,202,778	-				-2.6
1,202,778	-				-1.0
1,202,778	-				+1.3
1,202,803	+				+1.0
1,202,807	-				-1.4
1,202,812	+				-0.0
1,202,813	-				+0.4
1,202,877	+		HGI48_RS05700	0.16	-1.2
1,202,878	-		HGI48_RS05700	0.16	-3.3
1,202,917	-		HGI48_RS05700	0.31	+1.1
1,203,015	+		HGI48_RS05700	0.67	-0.1
1,203,110	+				+0.6
1,203,110	+				-1.4
1,203,111	-				-0.9
1,203,111	-				-0.4
1,203,155	+				-1.2
1,203,155	+				+1.3
1,203,156	-				-0.8
1,203,156	-				-1.2
1,203,156	-				-2.2
1,203,180	+				+1.0
1,203,181	+				+0.3
1,203,181	+				-0.0
1,203,186	+				+0.1
1,203,186	+				+0.8
1,203,186	+				-0.4
1,203,186	+				-1.2
1,203,187	-				-2.1
1,203,188	+				+0.9
1,203,188	+				-1.2
1,203,188	+				-0.6
1,203,189	-				-1.8
1,203,189	-				-0.0
1,203,189	-				-1.8
1,203,189	-				+0.3
1,203,189	-				-1.9
1,203,204	-				+0.3
1,203,237	+				-1.2
1,203,237	+				+0.3
1,203,238	-				+0.1
1,203,238	-				-0.7
1,203,244	-				-0.1
1,203,254	+				+0.3
1,203,254	+				-1.8
1,203,284	+				+1.3
1,203,284	+				-0.4
1,203,285	-				-1.9
1,203,285	-				+2.0
1,203,285	-				-0.7
1,203,285	-				-1.7
1,203,339	+				+1.1
1,203,340	-				-0.2
1,203,360	+				+1.6
1,203,360	+				-0.8
1,203,361	-				-1.7
1,203,361	-				-0.2
1,203,361	-				-0.1
1,203,361	-				+0.1
1,203,374	+				-2.9
1,203,408	+				+0.2
1,203,409	-				-1.8
1,203,464	+				-1.0
1,203,465	-				+0.8
1,203,537	-				-1.1
1,203,607	+		HGI48_RS05705	0.13	-2.0
1,203,607	+		HGI48_RS05705	0.13	-1.4
1,203,607	+		HGI48_RS05705	0.13	+0.1
1,203,608	-		HGI48_RS05705	0.13	-0.8
1,203,608	-		HGI48_RS05705	0.13	-0.3
1,203,608	-		HGI48_RS05705	0.13	+0.8
1,203,608	-		HGI48_RS05705	0.13	-0.4
1,203,608	-				+1.6
1,203,609	+		HGI48_RS05705	0.13	+0.8
1,203,609	+		HGI48_RS05705	0.13	-0.1
1,203,609	+		HGI48_RS05705	0.13	+1.0
1,203,609	+		HGI48_RS05705	0.13	-1.4
1,203,610	-				-1.0
1,203,610	-		HGI48_RS05705	0.13	-0.2
1,203,610	-				+1.3
1,203,610	-		HGI48_RS05705	0.13	-1.4
1,203,610	-		HGI48_RS05705	0.13	-0.4
1,203,610	-		HGI48_RS05705	0.13	-1.2
1,203,610	-				+0.6