Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS04930

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,031,846	+		HGI48_RS04925	0.47	-2.7
1,031,846	+		HGI48_RS04925	0.47	-0.1
1,031,846	+		HGI48_RS04925	0.47	-0.3
1,031,847	-				+0.6
1,031,847	-		HGI48_RS04925	0.47	+1.1
1,031,884	+		HGI48_RS04925	0.52	+0.7
1,032,163	+				-0.3
1,032,163	+				-1.0
1,032,163	+				-0.3
1,032,163	+				-0.2
1,032,163	+				-1.4
1,032,163	+				-1.3
1,032,163	+				-1.3
1,032,163	+				+0.0
1,032,163	+				-2.2
1,032,163	+				+0.5
1,032,164	-				-0.1
1,032,164	-				-1.0
1,032,164	-				+0.3
1,032,164	-				-0.5
1,032,164	-				+1.0
1,032,164	-				-1.1
1,032,164	-				+0.9
1,032,164	-				-0.5
1,032,164	-				+2.0
1,032,164	-				-0.8
1,032,164	-				-1.0
1,032,164	-				-2.4
1,032,164	-				-0.4
1,032,164	-				-0.1
1,032,164	-				+0.4
1,032,164	-				+1.3
1,032,167	+				+0.4
1,032,167	+				-1.4
1,032,232	+				-0.3
1,032,238	-				+0.0
1,032,252	+				+0.8
1,032,290	-				-0.1
1,032,421	-				-0.7
1,032,422	+				+1.2
1,032,519	+				+0.6
1,032,519	+				+0.4
1,032,520	-				+0.0
1,032,520	-				-1.7
1,032,520	-				+0.6
1,032,520	-				+1.0
1,032,527	+				-0.1
1,032,527	+				+0.6
1,032,528	-				+0.6
1,032,528	-				-0.5
1,032,555	+				+0.5
1,032,556	-				+0.3
1,032,556	-				-2.2
1,032,570	-				+0.6
1,032,570	-				-2.0
1,032,570	-				-2.6
1,032,570	-				-1.4
1,032,570	-				+0.2
1,032,580	+				+1.4
1,032,580	+				+0.2
1,032,727	-				+1.1
1,032,742	-				+0.1
1,032,744	+				+0.8
1,032,745	-				-1.0
1,032,908	+				-1.4
1,032,909	-				-0.3
1,032,911	+				-0.3
1,032,912	-				+0.4
1,032,958	+				-0.1
1,032,959	-				-1.0
1,032,959	-				+1.3
1,032,960	+				+0.6
1,032,960	+				+0.2
1,032,960	+				-0.4
1,032,961	-				+0.0
1,032,961	-				+0.3
1,032,961	-				+0.1
1,032,961	-				+0.0
1,032,987	+				+0.2
1,032,988	-				-2.6
1,033,006	+				+0.2
1,033,078	-		HGI48_RS04930	0.11	+0.4
1,033,210	+		HGI48_RS04930	0.15	-1.4
1,033,211	-		HGI48_RS04930	0.15	-0.0
1,033,211	-		HGI48_RS04930	0.15	-0.2
1,033,211	-		HGI48_RS04930	0.15	-1.4
1,033,212	+		HGI48_RS04930	0.15	+0.2
1,033,213	-		HGI48_RS04930	0.15	+0.0
1,033,213	-		HGI48_RS04930	0.15	-0.4
1,033,269	+		HGI48_RS04930	0.17	-1.6
1,033,270	-		HGI48_RS04930	0.17	+0.1
1,033,333	+		HGI48_RS04930	0.19	-0.3
1,033,354	+		HGI48_RS04930	0.20	+0.6
1,033,354	+		HGI48_RS04930	0.20	-0.4
1,033,355	-		HGI48_RS04930	0.20	+0.2
1,033,382	+		HGI48_RS04930	0.21	+0.3
1,033,383	-		HGI48_RS04930	0.21	+0.6
1,033,387	-		HGI48_RS04930	0.21	+0.0
1,033,402	+		HGI48_RS04930	0.21	-0.1
1,033,442	+				+1.6
1,033,442	+		HGI48_RS04930	0.23	+0.6
1,033,442	+		HGI48_RS04930	0.23	+1.2
1,033,443	-		HGI48_RS04930	0.23	-1.7
1,033,519	-		HGI48_RS04930	0.25	+0.5
1,033,554	+				+1.0
1,033,568	-		HGI48_RS04930	0.27	+0.9
1,033,643	-				+1.9
1,033,643	-				-0.4
1,033,732	+		HGI48_RS04930	0.32	+0.4
1,033,732	+		HGI48_RS04930	0.32	-0.7
1,033,732	+		HGI48_RS04930	0.32	-1.2
1,033,733	-				+1.0
1,033,733	-		HGI48_RS04930	0.32	-0.1
1,033,733	-		HGI48_RS04930	0.32	+0.5
1,033,733	-		HGI48_RS04930	0.32	-2.6
1,033,733	-		HGI48_RS04930	0.32	+0.0
1,033,733	-		HGI48_RS04930	0.32	+0.3
1,033,733	-		HGI48_RS04930	0.32	+0.1
1,033,733	-		HGI48_RS04930	0.32	-0.2
1,033,774	+		HGI48_RS04930	0.33	-0.9
1,033,774	+		HGI48_RS04930	0.33	-0.7
1,033,775	-		HGI48_RS04930	0.33	-1.7
1,033,775	-		HGI48_RS04930	0.33	+0.1
1,033,836	+		HGI48_RS04930	0.35	-2.0
1,033,874	-		HGI48_RS04930	0.36	+0.3
1,033,874	-		HGI48_RS04930	0.36	-0.2
1,033,874	-				+0.6
1,033,874	-		HGI48_RS04930	0.36	-0.1
1,033,874	-		HGI48_RS04930	0.36	-1.0
1,033,915	+		HGI48_RS04930	0.37	-1.1
1,033,916	-				+1.6
1,033,916	-		HGI48_RS04930	0.37	-0.7
1,033,983	+				-1.0
1,033,984	-		HGI48_RS04930	0.40	-3.0
1,033,993	+		HGI48_RS04930	0.40	+0.7
1,034,055	+		HGI48_RS04930	0.42	+0.6
1,034,055	+		HGI48_RS04930	0.42	+0.1
1,034,056	-		HGI48_RS04930	0.42	+0.8
1,034,058	+		HGI48_RS04930	0.42	-0.3
1,034,209	+		HGI48_RS04930	0.47	+1.6
1,034,209	+		HGI48_RS04930	0.47	-0.3
1,034,230	-		HGI48_RS04930	0.47	+0.6
1,034,272	-		HGI48_RS04930	0.49	+0.4
1,034,272	-		HGI48_RS04930	0.49	-0.8
1,034,338	+		HGI48_RS04930	0.51	+0.1
1,034,338	+		HGI48_RS04930	0.51	-1.7
1,034,338	+		HGI48_RS04930	0.51	+2.3
1,034,338	+		HGI48_RS04930	0.51	-0.7
1,034,338	+		HGI48_RS04930	0.51	+0.0
1,034,339	-		HGI48_RS04930	0.51	-0.4
1,034,339	-		HGI48_RS04930	0.51	-1.4
1,034,355	+		HGI48_RS04930	0.51	-2.7
1,034,355	+		HGI48_RS04930	0.51	-0.7
1,034,355	+		HGI48_RS04930	0.51	-0.8
1,034,356	-		HGI48_RS04930	0.51	+1.8
1,034,356	-		HGI48_RS04930	0.51	-0.1
1,034,356	-		HGI48_RS04930	0.51	+0.0
1,034,356	-		HGI48_RS04930	0.51	-0.1
1,034,356	-		HGI48_RS04930	0.51	+0.2
1,034,584	+		HGI48_RS04930	0.59	+0.6
1,034,638	-		HGI48_RS04930	0.60	-0.6
1,034,764	-		HGI48_RS04930	0.64	+0.0
1,034,790	+		HGI48_RS04930	0.65	+1.6
1,034,790	+		HGI48_RS04930	0.65	+0.1
1,034,790	+		HGI48_RS04930	0.65	-1.4
1,034,791	-		HGI48_RS04930	0.65	-1.1
1,034,794	+		HGI48_RS04930	0.65	-1.2
1,034,794	+		HGI48_RS04930	0.65	+0.4
1,034,794	+				-1.0
1,034,794	+				-0.4
1,034,794	+		HGI48_RS04930	0.65	+1.6
1,034,794	+		HGI48_RS04930	0.65	+0.8
1,034,795	-		HGI48_RS04930	0.65	+0.0
1,034,795	-		HGI48_RS04930	0.65	-0.4
1,034,795	-		HGI48_RS04930	0.65	-0.4
1,034,795	-		HGI48_RS04930	0.65	-0.4
1,034,795	-		HGI48_RS04930	0.65	-0.2
1,035,104	-		HGI48_RS04930	0.75	+0.3
1,035,104	-				-1.0
1,035,148	+		HGI48_RS04930	0.76	+1.3
1,035,148	+		HGI48_RS04930	0.76	-0.1
1,035,148	+		HGI48_RS04930	0.76	+1.3
1,035,148	+				+0.0
1,035,149	-		HGI48_RS04930	0.76	-0.4
1,035,149	-		HGI48_RS04930	0.76	+0.6
1,035,149	-		HGI48_RS04930	0.76	-2.6
1,035,280	+		HGI48_RS04930	0.81	-2.0
1,035,295	+		HGI48_RS04930	0.81	+1.0
1,035,343	+		HGI48_RS04930	0.82	+0.3
1,035,344	-		HGI48_RS04930	0.83	-1.1
1,035,349	+		HGI48_RS04930	0.83	-0.7
1,035,349	+		HGI48_RS04930	0.83	-0.5
1,035,349	+		HGI48_RS04930	0.83	+0.3
1,035,349	+		HGI48_RS04930	0.83	-0.3
1,035,349	+		HGI48_RS04930	0.83	+0.0
1,035,349	+		HGI48_RS04930	0.83	+0.1
1,035,349	+		HGI48_RS04930	0.83	+1.6
1,035,349	+		HGI48_RS04930	0.83	-2.0
1,035,349	+		HGI48_RS04930	0.83	-1.4
1,035,349	+		HGI48_RS04930	0.83	-1.2
1,035,349	+		HGI48_RS04930	0.83	-0.6
1,035,349	+		HGI48_RS04930	0.83	-2.0
1,035,349	+		HGI48_RS04930	0.83	-1.2
1,035,349	+		HGI48_RS04930	0.83	-0.8
1,035,349	+		HGI48_RS04930	0.83	-0.4
1,035,349	+				-1.0
1,035,349	+		HGI48_RS04930	0.83	-0.8
1,035,349	+		HGI48_RS04930	0.83	+0.6
1,035,349	+		HGI48_RS04930	0.83	-0.7
1,035,349	+		HGI48_RS04930	0.83	-0.3
1,035,349	+		HGI48_RS04930	0.83	+0.4
1,035,350	-		HGI48_RS04930	0.83	+1.0
1,035,350	-		HGI48_RS04930	0.83	-1.4
1,035,350	-		HGI48_RS04930	0.83	+0.0
1,035,350	-		HGI48_RS04930	0.83	-0.1
1,035,350	-		HGI48_RS04930	0.83	-0.4
1,035,350	-		HGI48_RS04930	0.83	+0.6
1,035,350	-		HGI48_RS04930	0.83	+1.1
1,035,350	-		HGI48_RS04930	0.83	+0.6
1,035,350	-				-0.4
1,035,350	-				+1.3
1,035,350	-		HGI48_RS04930	0.83	-1.4
1,035,350	-		HGI48_RS04930	0.83	+0.0
1,035,350	-		HGI48_RS04930	0.83	-0.9
1,035,351	+				+0.6
1,035,351	+		HGI48_RS04930	0.83	-0.2
1,035,351	+		HGI48_RS04930	0.83	-2.0
1,035,352	-		HGI48_RS04930	0.83	-1.0
1,035,519	-		HGI48_RS04930	0.88	-0.5
1,035,620	+				+1.9
1,035,621	-				+0.9
1,035,667	+				+0.2
1,035,885	+				-0.3
1,035,986	+				+0.3
1,035,986	+				+0.3
1,035,987	-				-0.9
1,035,987	-				-0.4
1,036,180	+		HGI48_RS04935	0.20	-0.0
1,036,180	+		HGI48_RS04935	0.20	+0.1
1,036,181	-		HGI48_RS04935	0.20	+0.6
1,036,216	+		HGI48_RS04935	0.24	-0.7
1,036,216	+				+0.6
1,036,216	+		HGI48_RS04935	0.24	-1.4
1,036,241	+		HGI48_RS04935	0.26	-1.2
1,036,242	-		HGI48_RS04935	0.26	+0.2
1,036,242	-		HGI48_RS04935	0.26	+0.3
1,036,276	+		HGI48_RS04935	0.29	+0.7
1,036,276	+		HGI48_RS04935	0.29	-0.4
1,036,276	+		HGI48_RS04935	0.29	-1.0
1,036,276	+		HGI48_RS04935	0.29	+0.8
1,036,276	+		HGI48_RS04935	0.29	-1.3
1,036,277	-		HGI48_RS04935	0.30	+1.3
1,036,385	+		HGI48_RS04935	0.40	+0.1
1,036,385	+				+1.6
1,036,386	-		HGI48_RS04935	0.40	-2.0
1,036,386	-		HGI48_RS04935	0.40	-0.6
1,036,387	+				+0.6
1,036,388	-		HGI48_RS04935	0.40	-1.7
1,036,388	-				+1.8
1,036,486	+		HGI48_RS04935	0.50	+0.3
1,036,486	+				+2.3
1,036,487	-		HGI48_RS04935	0.50	+0.6
1,036,487	-		HGI48_RS04935	0.50	-1.2
1,036,567	+				+1.8
1,036,573	+		HGI48_RS04935	0.58	+0.4
1,036,573	+		HGI48_RS04935	0.58	-3.3
1,036,573	+		HGI48_RS04935	0.58	+1.2
1,036,574	-		HGI48_RS04935	0.58	-0.2
1,036,574	-		HGI48_RS04935	0.58	-0.3
1,036,574	-		HGI48_RS04935	0.58	+1.3
1,036,574	-		HGI48_RS04935	0.58	-1.7
1,036,574	-		HGI48_RS04935	0.58	-2.0
1,036,574	-		HGI48_RS04935	0.58	+0.4
1,036,624	+				+0.6
1,036,636	+		HGI48_RS04935	0.64	-0.2
1,036,636	+				+1.0
1,036,636	+		HGI48_RS04935	0.64	-1.2
1,036,636	+		HGI48_RS04935	0.64	+1.3
1,036,637	-		HGI48_RS04935	0.64	+0.9
1,036,637	-		HGI48_RS04935	0.64	-0.7
1,036,637	-		HGI48_RS04935	0.64	-1.4
1,036,682	+		HGI48_RS04935	0.68	+0.1
1,036,807	+		HGI48_RS04935	0.80	-1.9
1,036,807	+		HGI48_RS04935	0.80	-1.2
1,036,808	-		HGI48_RS04935	0.81	+0.6
1,036,808	-		HGI48_RS04935	0.81	-1.6
1,036,808	-		HGI48_RS04935	0.81	-0.1
1,036,808	-		HGI48_RS04935	0.81	-0.4
1,036,808	-		HGI48_RS04935	0.81	-0.8
1,036,808	-		HGI48_RS04935	0.81	-0.8
1,036,808	-		HGI48_RS04935	0.81	-0.4