Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS04820

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,010,213	+		HGI48_RS04810	0.57	+0.6
1,010,214	-				+3.1
1,010,215	+		HGI48_RS04810	0.57	-0.5
1,010,215	+		HGI48_RS04810	0.57	+0.1
1,010,215	+		HGI48_RS04810	0.57	-0.5
1,010,216	-		HGI48_RS04810	0.58	+0.3
1,010,216	-		HGI48_RS04810	0.58	+0.3
1,010,216	-		HGI48_RS04810	0.58	-1.5
1,010,216	-		HGI48_RS04810	0.58	+0.6
1,010,216	-		HGI48_RS04810	0.58	+0.9
1,010,298	+		HGI48_RS04810	0.68	+0.8
1,010,298	+		HGI48_RS04810	0.68	-1.5
1,010,298	+		HGI48_RS04810	0.68	-0.4
1,010,299	-		HGI48_RS04810	0.68	-1.4
1,010,299	-		HGI48_RS04810	0.68	-0.8
1,010,299	-		HGI48_RS04810	0.68	+0.3
1,010,299	-		HGI48_RS04810	0.68	+0.9
1,010,315	+		HGI48_RS04810	0.70	-0.3
1,010,315	+		HGI48_RS04810	0.70	-0.8
1,010,315	+		HGI48_RS04810	0.70	-1.1
1,010,315	+				+2.0
1,010,316	-		HGI48_RS04810	0.71	-2.5
1,010,316	-		HGI48_RS04810	0.71	-2.7
1,010,316	-		HGI48_RS04810	0.71	-1.5
1,010,316	-		HGI48_RS04810	0.71	+0.1
1,010,316	-		HGI48_RS04810	0.71	+0.4
1,010,353	+		HGI48_RS04810	0.75	+0.2
1,010,354	-		HGI48_RS04810	0.75	-1.0
1,010,423	-		HGI48_RS04810	0.84	-0.5
1,010,426	+		HGI48_RS04810	0.85	+0.2
1,010,426	+		HGI48_RS04810	0.85	-0.6
1,010,426	+				+1.4
1,010,427	-		HGI48_RS04810	0.85	-0.2
1,010,427	-		HGI48_RS04810	0.85	+0.4
1,010,427	-		HGI48_RS04810	0.85	-1.2
1,010,427	-		HGI48_RS04810	0.85	-0.2
1,010,427	-		HGI48_RS04810	0.85	-0.9
1,010,427	-		HGI48_RS04810	0.85	+1.2
1,010,427	-		HGI48_RS04810	0.85	+0.3
1,010,427	-		HGI48_RS04810	0.85	-2.0
1,010,427	-		HGI48_RS04810	0.85	+0.2
1,010,430	+		HGI48_RS04810	0.85	+0.6
1,010,430	+		HGI48_RS04810	0.85	-0.4
1,010,431	-		HGI48_RS04810	0.85	-1.7
1,010,431	-		HGI48_RS04810	0.85	+0.3
1,010,577	+				-2.0
1,010,577	+				-0.2
1,010,577	+				+1.2
1,010,580	+				-0.5
1,010,586	+				-0.6
1,010,586	+				+0.2
1,010,587	-				+1.8
1,010,591	+				+0.6
1,010,591	+				-2.3
1,010,591	+				+0.3
1,010,591	+				+0.9
1,010,591	+				-1.2
1,010,591	+				-0.7
1,010,592	-				-2.2
1,010,592	-				+1.9
1,010,592	-				+0.2
1,010,592	-				+0.5
1,010,592	-				+0.3
1,010,592	-				-3.0
1,010,592	-				+1.0
1,010,592	-				+1.4
1,010,624	+				+0.2
1,010,624	+				-2.4
1,010,677	+				+2.8
1,010,690	+		HGI48_RS04815	0.19	-0.1
1,010,690	+		HGI48_RS04815	0.19	-0.4
1,010,690	+		HGI48_RS04815	0.19	-0.4
1,010,691	-		HGI48_RS04815	0.19	-0.2
1,010,691	-		HGI48_RS04815	0.19	+0.7
1,010,798	-		HGI48_RS04815	0.40	+0.3
1,010,798	-		HGI48_RS04815	0.40	+1.6
1,010,834	+		HGI48_RS04815	0.47	-0.7
1,010,835	-		HGI48_RS04815	0.48	-2.0
1,010,954	+		HGI48_RS04815	0.71	-1.4
1,010,954	+		HGI48_RS04815	0.71	-0.8
1,010,955	-		HGI48_RS04815	0.71	-1.0
1,010,962	+		HGI48_RS04815	0.73	-1.0
1,010,970	+		HGI48_RS04815	0.74	+0.2
1,010,971	-		HGI48_RS04815	0.74	+1.9
1,010,988	+		HGI48_RS04815	0.78	+0.4
1,010,988	+		HGI48_RS04815	0.78	-1.0
1,010,989	-		HGI48_RS04815	0.78	-1.1
1,011,016	+		HGI48_RS04815	0.83	-0.8
1,011,064	+				-0.4
1,011,064	+				-1.0
1,011,121	+				+0.8
1,011,132	+				-0.4
1,011,132	+				-1.1
1,011,132	+				-0.5
1,011,132	+				-2.2
1,011,133	-				-0.7
1,011,135	+				+0.8
1,011,136	-				-0.7
1,011,148	+				+1.4
1,011,149	-				+1.9
1,011,149	-				-0.3
1,011,151	+				-0.7
1,011,151	+				-1.7
1,011,206	-				-1.7
1,011,227	+				+0.6
1,011,227	+				-0.4
1,011,227	+				+0.6
1,011,227	+				-0.1
1,011,228	-				+1.0
1,011,228	-				-2.2
1,011,230	+				+1.0
1,011,230	+				+0.2
1,011,231	-				-0.5
1,011,239	+		HGI48_RS04820	0.11	-2.0
1,011,239	+		HGI48_RS04820	0.11	-1.2
1,011,297	+		HGI48_RS04820	0.30	-0.4
1,011,369	-		HGI48_RS04820	0.54	+0.4
1,011,389	+		HGI48_RS04820	0.60	-1.7
1,011,389	+		HGI48_RS04820	0.60	-1.1
1,011,389	+		HGI48_RS04820	0.60	+0.4
1,011,390	-		HGI48_RS04820	0.61	-0.2
1,011,390	-		HGI48_RS04820	0.61	-0.2
1,011,390	-		HGI48_RS04820	0.61	-1.4
1,011,487	+				-0.1
1,011,647	+		HGI48_RS04825	0.62	-0.3
1,011,690	+		HGI48_RS04825	0.81	+1.1
1,011,764	+				+0.2
1,011,765	-				-1.7
1,011,791	-				-1.0
1,011,815	+				-0.5
1,011,816	-				+1.2
1,011,830	+				-0.2
1,011,832	+				-0.4
1,011,906	-				-0.4
1,011,955	+		HGI48_RS04830	0.22	-1.0
1,011,955	+		HGI48_RS04830	0.22	+1.8
1,011,956	-		HGI48_RS04830	0.22	+2.8
1,011,964	+		HGI48_RS04830	0.24	+1.1
1,011,964	+		HGI48_RS04830	0.24	+0.6
1,011,964	+		HGI48_RS04830	0.24	+0.6
1,011,964	+		HGI48_RS04830	0.24	-0.4
1,011,965	-		HGI48_RS04830	0.24	-2.4
1,011,965	-		HGI48_RS04830	0.24	+0.3
1,011,965	-		HGI48_RS04830	0.24	-0.4
1,011,965	-		HGI48_RS04830	0.24	-1.0
1,011,993	+		HGI48_RS04830	0.27	-0.8
1,011,993	+				+2.0
1,012,107	+		HGI48_RS04830	0.43	-0.3
1,012,107	+		HGI48_RS04830	0.43	-0.2
1,012,107	+		HGI48_RS04830	0.43	-0.6
1,012,108	-		HGI48_RS04830	0.43	-1.4
1,012,108	-		HGI48_RS04830	0.43	+0.9
1,012,108	-		HGI48_RS04830	0.43	-1.5
1,012,154	+				+0.0
1,012,154	+		HGI48_RS04830	0.49	-0.8
1,012,154	+		HGI48_RS04830	0.49	+0.4
1,012,154	+		HGI48_RS04830	0.49	+1.2
1,012,155	-		HGI48_RS04830	0.49	-1.8
1,012,155	-				+2.6
1,012,155	-		HGI48_RS04830	0.49	+0.3
1,012,155	-		HGI48_RS04830	0.49	+0.5
1,012,155	-		HGI48_RS04830	0.49	-0.1
1,012,155	-		HGI48_RS04830	0.49	-1.5
1,012,155	-		HGI48_RS04830	0.49	+1.3
1,012,156	+		HGI48_RS04830	0.49	-0.1
1,012,156	+		HGI48_RS04830	0.49	+0.7
1,012,156	+		HGI48_RS04830	0.49	+1.2
1,012,188	+		HGI48_RS04830	0.54	-0.2
1,012,189	-		HGI48_RS04830	0.54	-1.2
1,012,189	-		HGI48_RS04830	0.54	-0.2
1,012,189	-		HGI48_RS04830	0.54	-0.2
1,012,265	+		HGI48_RS04830	0.64	+0.0
1,012,410	-		HGI48_RS04830	0.83	-2.7
1,012,411	+		HGI48_RS04830	0.84	+0.1
1,012,476	+				+0.3