Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS04630 and HGI48_RS04635 are separated by 333 nucleotides HGI48_RS04635 and HGI48_RS04640 are separated by 99 nucleotides
HGI48_RS04630: HGI48_RS04630 - rhamnogalacturonate lyase, at 970,125 to 971,855
_RS04630
HGI48_RS04635: HGI48_RS04635 - TIGR00645 family protein, at 972,189 to 972,722
_RS04635
HGI48_RS04640: HGI48_RS04640 - molybdopterin-dependent oxidoreductase, at 972,822 to 975,083
_RS04640
Position (kb) 972
973 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 971.245 kb on + strand, within HGI48_RS04630 at 971.349 kb on - strand, within HGI48_RS04630 at 971.446 kb on + strand, within HGI48_RS04630 at 971.446 kb on + strand, within HGI48_RS04630 at 971.446 kb on + strand, within HGI48_RS04630 at 971.446 kb on + strand, within HGI48_RS04630 at 971.446 kb on + strand, within HGI48_RS04630 at 971.446 kb on + strand, within HGI48_RS04630 at 971.446 kb on + strand, within HGI48_RS04630 at 971.446 kb on + strand, within HGI48_RS04630 at 971.447 kb on - strand, within HGI48_RS04630 at 971.447 kb on - strand, within HGI48_RS04630 at 971.447 kb on - strand at 971.447 kb on - strand, within HGI48_RS04630 at 971.499 kb on + strand, within HGI48_RS04630 at 971.499 kb on + strand, within HGI48_RS04630 at 971.499 kb on + strand, within HGI48_RS04630 at 971.500 kb on - strand, within HGI48_RS04630 at 971.500 kb on - strand, within HGI48_RS04630 at 971.500 kb on - strand, within HGI48_RS04630 at 971.525 kb on - strand, within HGI48_RS04630 at 971.525 kb on - strand, within HGI48_RS04630 at 971.605 kb on + strand, within HGI48_RS04630 at 971.605 kb on + strand, within HGI48_RS04630 at 971.605 kb on + strand, within HGI48_RS04630 at 971.856 kb on - strand at 971.895 kb on + strand at 971.895 kb on + strand at 971.896 kb on - strand at 971.909 kb on - strand at 971.916 kb on + strand at 971.917 kb on - strand at 972.014 kb on + strand at 972.014 kb on + strand at 972.014 kb on + strand at 972.014 kb on + strand at 972.014 kb on + strand at 972.015 kb on - strand at 972.063 kb on + strand at 972.150 kb on + strand at 972.175 kb on - strand at 972.210 kb on - strand at 972.210 kb on - strand at 972.216 kb on + strand at 972.216 kb on + strand at 972.216 kb on + strand at 972.216 kb on + strand at 972.217 kb on - strand at 972.217 kb on - strand at 972.217 kb on - strand at 972.217 kb on - strand at 972.217 kb on - strand at 972.247 kb on - strand, within HGI48_RS04635 at 972.421 kb on - strand, within HGI48_RS04635 at 972.421 kb on - strand, within HGI48_RS04635 at 972.603 kb on + strand, within HGI48_RS04635 at 972.603 kb on + strand, within HGI48_RS04635 at 972.603 kb on + strand, within HGI48_RS04635 at 972.603 kb on + strand, within HGI48_RS04635 at 972.604 kb on - strand, within HGI48_RS04635 at 972.604 kb on - strand, within HGI48_RS04635 at 972.604 kb on - strand, within HGI48_RS04635 at 972.604 kb on - strand at 972.610 kb on + strand, within HGI48_RS04635 at 972.713 kb on + strand at 972.713 kb on + strand at 972.713 kb on + strand at 972.713 kb on + strand at 972.713 kb on + strand at 972.720 kb on + strand at 972.720 kb on + strand at 972.720 kb on + strand at 972.720 kb on + strand at 972.720 kb on + strand at 972.720 kb on + strand at 972.720 kb on + strand at 972.721 kb on - strand at 972.721 kb on - strand at 972.721 kb on - strand at 972.721 kb on - strand at 972.721 kb on - strand at 973.030 kb on + strand at 973.111 kb on + strand, within HGI48_RS04640 at 973.111 kb on + strand, within HGI48_RS04640 at 973.111 kb on + strand, within HGI48_RS04640 at 973.111 kb on + strand, within HGI48_RS04640 at 973.111 kb on + strand, within HGI48_RS04640 at 973.111 kb on + strand, within HGI48_RS04640 at 973.112 kb on - strand, within HGI48_RS04640 at 973.202 kb on + strand, within HGI48_RS04640 at 973.203 kb on - strand, within HGI48_RS04640 at 973.203 kb on - strand, within HGI48_RS04640 at 973.203 kb on - strand, within HGI48_RS04640 at 973.203 kb on - strand, within HGI48_RS04640 at 973.317 kb on + strand, within HGI48_RS04640 at 973.317 kb on + strand, within HGI48_RS04640 at 973.317 kb on + strand, within HGI48_RS04640 at 973.318 kb on - strand, within HGI48_RS04640 at 973.420 kb on + strand, within HGI48_RS04640 at 973.420 kb on + strand, within HGI48_RS04640 at 973.421 kb on - strand, within HGI48_RS04640 at 973.421 kb on - strand, within HGI48_RS04640 at 973.421 kb on - strand, within HGI48_RS04640 at 973.421 kb on - strand, within HGI48_RS04640 at 973.495 kb on + strand, within HGI48_RS04640 at 973.495 kb on + strand, within HGI48_RS04640 at 973.584 kb on - strand, within HGI48_RS04640 at 973.584 kb on - strand, within HGI48_RS04640 at 973.584 kb on - strand, within HGI48_RS04640 at 973.588 kb on + strand, within HGI48_RS04640
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 971,245 + HGI48_RS04630 0.65 -0.4 971,349 - HGI48_RS04630 0.71 -0.0 971,446 + HGI48_RS04630 0.76 -1.7 971,446 + HGI48_RS04630 0.76 -0.7 971,446 + HGI48_RS04630 0.76 -0.8 971,446 + HGI48_RS04630 0.76 -0.3 971,446 + HGI48_RS04630 0.76 -0.1 971,446 + HGI48_RS04630 0.76 -2.1 971,446 + HGI48_RS04630 0.76 +0.6 971,446 + HGI48_RS04630 0.76 -1.4 971,447 - HGI48_RS04630 0.76 -2.0 971,447 - HGI48_RS04630 0.76 -2.2 971,447 - +1.6 971,447 - HGI48_RS04630 0.76 +0.5 971,499 + HGI48_RS04630 0.79 +0.7 971,499 + HGI48_RS04630 0.79 +0.8 971,499 + HGI48_RS04630 0.79 +0.1 971,500 - HGI48_RS04630 0.79 +0.2 971,500 - HGI48_RS04630 0.79 +0.9 971,500 - HGI48_RS04630 0.79 -1.4 971,525 - HGI48_RS04630 0.81 -0.1 971,525 - HGI48_RS04630 0.81 +0.4 971,605 + HGI48_RS04630 0.85 -1.7 971,605 + HGI48_RS04630 0.85 -0.9 971,605 + HGI48_RS04630 0.85 +0.9 971,856 - -0.1 971,895 + -1.4 971,895 + +0.6 971,896 - +1.2 971,909 - -1.0 971,916 + -2.4 971,917 - +0.6 972,014 + +0.2 972,014 + +0.8 972,014 + -0.8 972,014 + -1.7 972,014 + -1.0 972,015 - -2.7 972,063 + -1.0 972,150 + +1.4 972,175 - -0.1 972,210 - -1.0 972,210 - +0.5 972,216 + +1.0 972,216 + -1.6 972,216 + +0.4 972,216 + +0.6 972,217 - +1.9 972,217 - +0.5 972,217 - -1.4 972,217 - -3.1 972,217 - -3.1 972,247 - HGI48_RS04635 0.11 +0.8 972,421 - HGI48_RS04635 0.43 -0.3 972,421 - HGI48_RS04635 0.43 -0.1 972,603 + HGI48_RS04635 0.78 +0.6 972,603 + HGI48_RS04635 0.78 -0.1 972,603 + HGI48_RS04635 0.78 -0.1 972,603 + HGI48_RS04635 0.78 +1.1 972,604 - HGI48_RS04635 0.78 -0.1 972,604 - HGI48_RS04635 0.78 +0.4 972,604 - HGI48_RS04635 0.78 -0.9 972,604 - +0.6 972,610 + HGI48_RS04635 0.79 +0.9 972,713 + -0.4 972,713 + +0.1 972,713 + +0.8 972,713 + -0.2 972,713 + +2.0 972,720 + -2.5 972,720 + +0.6 972,720 + -0.7 972,720 + +0.0 972,720 + +0.2 972,720 + +0.1 972,720 + +0.1 972,721 - +0.9 972,721 - -0.3 972,721 - +1.0 972,721 - -2.0 972,721 - -2.1 973,030 + -1.1 973,111 + HGI48_RS04640 0.13 +0.2 973,111 + HGI48_RS04640 0.13 -0.7 973,111 + HGI48_RS04640 0.13 +0.3 973,111 + HGI48_RS04640 0.13 +0.7 973,111 + HGI48_RS04640 0.13 -1.4 973,111 + HGI48_RS04640 0.13 +0.1 973,112 - HGI48_RS04640 0.13 +0.9 973,202 + HGI48_RS04640 0.17 -1.4 973,203 - HGI48_RS04640 0.17 -0.1 973,203 - HGI48_RS04640 0.17 +0.9 973,203 - HGI48_RS04640 0.17 +0.7 973,203 - HGI48_RS04640 0.17 -0.4 973,317 + HGI48_RS04640 0.22 -2.0 973,317 + HGI48_RS04640 0.22 +0.9 973,317 + HGI48_RS04640 0.22 -0.0 973,318 - HGI48_RS04640 0.22 +0.8 973,420 + HGI48_RS04640 0.26 -3.0 973,420 + HGI48_RS04640 0.26 -1.4 973,421 - HGI48_RS04640 0.26 +1.0 973,421 - HGI48_RS04640 0.26 +0.6 973,421 - HGI48_RS04640 0.26 -3.1 973,421 - HGI48_RS04640 0.26 -0.2 973,495 + HGI48_RS04640 0.30 -1.4 973,495 + HGI48_RS04640 0.30 -0.4 973,584 - HGI48_RS04640 0.34 -2.1 973,584 - HGI48_RS04640 0.34 +0.8 973,584 - HGI48_RS04640 0.34 +1.3 973,588 + HGI48_RS04640 0.34 -1.0
Or see this region's nucleotide sequence