Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS04360 and HGI48_RS04365 are separated by 524 nucleotides HGI48_RS04365 and HGI48_RS04370 are separated by 446 nucleotides
HGI48_RS04360: HGI48_RS04360 - GNAT family acetyltransferase, at 913,948 to 914,373
_RS04360
HGI48_RS04365: HGI48_RS04365 - RpoE-regulated lipoprotein, at 914,898 to 915,506
_RS04365
HGI48_RS04370: HGI48_RS04370 - glycosyltransferase, at 915,953 to 917,227
_RS04370
Position (kb) 914
915
916 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 913.932 kb on + strand at 913.932 kb on + strand at 913.932 kb on + strand at 913.933 kb on - strand at 913.933 kb on - strand at 913.933 kb on - strand at 914.155 kb on + strand, within HGI48_RS04360 at 914.156 kb on - strand, within HGI48_RS04360 at 914.156 kb on - strand, within HGI48_RS04360 at 914.156 kb on - strand, within HGI48_RS04360 at 914.156 kb on - strand, within HGI48_RS04360 at 914.158 kb on + strand, within HGI48_RS04360 at 914.158 kb on + strand, within HGI48_RS04360 at 914.158 kb on + strand, within HGI48_RS04360 at 914.158 kb on + strand, within HGI48_RS04360 at 914.158 kb on + strand, within HGI48_RS04360 at 914.159 kb on - strand, within HGI48_RS04360 at 914.159 kb on - strand, within HGI48_RS04360 at 914.159 kb on - strand, within HGI48_RS04360 at 914.159 kb on - strand at 914.159 kb on - strand, within HGI48_RS04360 at 914.159 kb on - strand, within HGI48_RS04360 at 914.179 kb on + strand, within HGI48_RS04360 at 914.299 kb on + strand, within HGI48_RS04360 at 914.299 kb on + strand, within HGI48_RS04360 at 914.299 kb on + strand, within HGI48_RS04360 at 914.300 kb on - strand, within HGI48_RS04360 at 914.314 kb on + strand at 914.314 kb on + strand, within HGI48_RS04360 at 914.315 kb on - strand, within HGI48_RS04360 at 914.315 kb on - strand, within HGI48_RS04360 at 914.368 kb on + strand at 914.369 kb on - strand at 914.369 kb on - strand at 914.430 kb on + strand at 914.430 kb on + strand at 914.430 kb on + strand at 914.431 kb on - strand at 914.431 kb on - strand at 914.431 kb on - strand at 914.530 kb on + strand at 914.612 kb on - strand at 914.612 kb on - strand at 914.644 kb on + strand at 914.645 kb on - strand at 914.645 kb on - strand at 914.645 kb on - strand at 914.645 kb on - strand at 914.696 kb on + strand at 914.733 kb on + strand at 914.733 kb on + strand at 914.733 kb on + strand at 914.733 kb on + strand at 914.734 kb on - strand at 914.857 kb on + strand at 914.857 kb on + strand at 914.857 kb on + strand at 914.858 kb on - strand at 914.858 kb on - strand at 914.880 kb on + strand at 914.880 kb on + strand at 914.880 kb on + strand at 914.880 kb on + strand at 914.880 kb on + strand at 914.881 kb on - strand at 914.881 kb on - strand at 915.165 kb on + strand, within HGI48_RS04365 at 915.166 kb on - strand at 915.303 kb on + strand at 915.396 kb on + strand at 915.396 kb on + strand, within HGI48_RS04365 at 915.396 kb on + strand, within HGI48_RS04365 at 915.449 kb on + strand at 915.479 kb on - strand at 915.479 kb on - strand at 915.504 kb on + strand at 915.515 kb on + strand at 915.522 kb on + strand at 915.522 kb on + strand at 915.603 kb on + strand at 915.603 kb on + strand at 915.635 kb on + strand at 915.635 kb on + strand at 915.635 kb on + strand at 915.636 kb on - strand at 915.636 kb on - strand at 915.636 kb on - strand at 915.636 kb on - strand at 915.651 kb on - strand at 915.682 kb on + strand at 915.757 kb on + strand at 915.758 kb on - strand at 915.758 kb on - strand at 915.758 kb on - strand at 915.769 kb on + strand at 915.769 kb on + strand at 915.769 kb on + strand at 915.769 kb on + strand at 915.770 kb on - strand at 915.770 kb on - strand at 915.770 kb on - strand at 915.770 kb on - strand at 915.794 kb on + strand at 915.794 kb on + strand at 915.794 kb on + strand at 915.795 kb on - strand at 915.795 kb on - strand at 915.806 kb on + strand at 915.821 kb on + strand at 915.822 kb on - strand at 915.822 kb on - strand at 915.822 kb on - strand at 915.871 kb on + strand at 915.881 kb on - strand at 915.941 kb on + strand at 915.942 kb on - strand at 915.942 kb on - strand at 915.961 kb on + strand at 915.999 kb on - strand at 916.003 kb on + strand at 916.003 kb on + strand at 916.003 kb on + strand at 916.003 kb on + strand at 916.003 kb on + strand at 916.004 kb on - strand at 916.004 kb on - strand at 916.004 kb on - strand at 916.004 kb on - strand at 916.004 kb on - strand at 916.004 kb on - strand at 916.004 kb on - strand at 916.231 kb on + strand at 916.231 kb on + strand, within HGI48_RS04370 at 916.231 kb on + strand, within HGI48_RS04370 at 916.231 kb on + strand, within HGI48_RS04370 at 916.232 kb on - strand, within HGI48_RS04370 at 916.232 kb on - strand, within HGI48_RS04370 at 916.311 kb on - strand, within HGI48_RS04370 at 916.311 kb on - strand, within HGI48_RS04370
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 913,932 + +0.4 913,932 + -2.0 913,932 + -0.6 913,933 - -0.8 913,933 - +0.7 913,933 - -1.4 914,155 + HGI48_RS04360 0.49 +0.2 914,156 - HGI48_RS04360 0.49 +1.0 914,156 - HGI48_RS04360 0.49 -1.7 914,156 - HGI48_RS04360 0.49 -0.4 914,156 - HGI48_RS04360 0.49 +0.4 914,158 + HGI48_RS04360 0.49 -0.7 914,158 + HGI48_RS04360 0.49 -0.3 914,158 + HGI48_RS04360 0.49 -1.4 914,158 + HGI48_RS04360 0.49 +1.0 914,158 + HGI48_RS04360 0.49 -0.4 914,159 - HGI48_RS04360 0.50 -1.0 914,159 - HGI48_RS04360 0.50 -0.4 914,159 - HGI48_RS04360 0.50 +0.5 914,159 - +1.9 914,159 - HGI48_RS04360 0.50 +0.3 914,159 - HGI48_RS04360 0.50 -1.7 914,179 + HGI48_RS04360 0.54 +0.2 914,299 + HGI48_RS04360 0.82 +0.8 914,299 + HGI48_RS04360 0.82 -3.7 914,299 + HGI48_RS04360 0.82 -0.5 914,300 - HGI48_RS04360 0.83 +0.6 914,314 + -1.0 914,314 + HGI48_RS04360 0.86 +0.2 914,315 - HGI48_RS04360 0.86 +0.7 914,315 - HGI48_RS04360 0.86 +1.1 914,368 + -1.1 914,369 - -0.2 914,369 - -1.1 914,430 + -2.4 914,430 + -1.0 914,430 + -2.0 914,431 - -0.4 914,431 - -0.7 914,431 - -0.1 914,530 + -0.7 914,612 - -0.1 914,612 - -0.4 914,644 + +1.0 914,645 - -0.0 914,645 - -2.1 914,645 - +0.1 914,645 - -0.7 914,696 + +1.2 914,733 + -1.0 914,733 + +0.0 914,733 + -1.7 914,733 + +0.3 914,734 - +0.0 914,857 + -1.0 914,857 + -1.7 914,857 + +0.1 914,858 - +0.2 914,858 - -0.1 914,880 + -0.5 914,880 + +0.6 914,880 + +0.3 914,880 + -1.4 914,880 + +0.6 914,881 - +1.2 914,881 - +1.2 915,165 + HGI48_RS04365 0.44 +1.0 915,166 - +1.0 915,303 + -1.0 915,396 + +1.4 915,396 + HGI48_RS04365 0.82 +0.3 915,396 + HGI48_RS04365 0.82 +0.1 915,449 + -1.0 915,479 - +0.4 915,479 - +0.4 915,504 + -1.1 915,515 + -0.4 915,522 + -0.4 915,522 + +0.3 915,603 + -0.7 915,603 + +0.1 915,635 + -2.1 915,635 + -1.8 915,635 + -1.1 915,636 - +0.2 915,636 - +1.6 915,636 - -1.7 915,636 - -2.2 915,651 - +2.3 915,682 + -1.0 915,757 + -0.1 915,758 - +2.1 915,758 - +0.5 915,758 - -0.2 915,769 + +1.3 915,769 + -0.5 915,769 + +0.4 915,769 + +0.2 915,770 - +0.6 915,770 - +0.0 915,770 - -0.0 915,770 - +0.3 915,794 + +0.9 915,794 + -2.4 915,794 + -1.7 915,795 - -0.4 915,795 - -0.4 915,806 + -0.3 915,821 + -0.8 915,822 - -0.1 915,822 - +0.3 915,822 - +1.4 915,871 + -0.4 915,881 - +0.2 915,941 + -1.8 915,942 - +0.2 915,942 - -1.0 915,961 + +0.5 915,999 - +0.2 916,003 + +0.8 916,003 + -2.0 916,003 + +0.4 916,003 + +0.6 916,003 + -1.4 916,004 - +0.3 916,004 - -1.4 916,004 - -2.0 916,004 - -0.7 916,004 - +0.6 916,004 - +0.3 916,004 - -1.2 916,231 + +1.0 916,231 + HGI48_RS04370 0.22 -0.2 916,231 + HGI48_RS04370 0.22 +0.4 916,231 + HGI48_RS04370 0.22 +1.2 916,232 - HGI48_RS04370 0.22 -1.7 916,232 - HGI48_RS04370 0.22 +1.2 916,311 - HGI48_RS04370 0.28 -0.7 916,311 - HGI48_RS04370 0.28 -1.3
Or see this region's nucleotide sequence