Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS04355 and HGI48_RS04360 are separated by 213 nucleotides HGI48_RS04360 and HGI48_RS04365 are separated by 524 nucleotides
HGI48_RS04355: HGI48_RS04355 - oxygen-dependent coproporphyrinogen oxidase, at 912,796 to 913,734
_RS04355
HGI48_RS04360: HGI48_RS04360 - GNAT family acetyltransferase, at 913,948 to 914,373
_RS04360
HGI48_RS04365: HGI48_RS04365 - RpoE-regulated lipoprotein, at 914,898 to 915,506
_RS04365
Position (kb) 913
914
915 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 913.007 kb on - strand, within HGI48_RS04355 at 913.221 kb on - strand, within HGI48_RS04355 at 913.242 kb on - strand, within HGI48_RS04355 at 913.251 kb on - strand, within HGI48_RS04355 at 913.363 kb on + strand, within HGI48_RS04355 at 913.428 kb on - strand, within HGI48_RS04355 at 913.568 kb on - strand, within HGI48_RS04355 at 913.636 kb on - strand at 913.688 kb on - strand at 913.735 kb on - strand at 913.735 kb on - strand at 913.735 kb on - strand at 913.745 kb on - strand at 913.772 kb on + strand at 913.772 kb on + strand at 913.785 kb on + strand at 913.785 kb on + strand at 913.785 kb on + strand at 913.785 kb on + strand at 913.786 kb on - strand at 913.788 kb on + strand at 913.788 kb on + strand at 913.794 kb on + strand at 913.794 kb on + strand at 913.795 kb on - strand at 913.795 kb on - strand at 913.795 kb on - strand at 913.795 kb on - strand at 913.795 kb on - strand at 913.795 kb on - strand at 913.795 kb on - strand at 913.797 kb on + strand at 913.797 kb on + strand at 913.797 kb on + strand at 913.797 kb on + strand at 913.797 kb on + strand at 913.797 kb on + strand at 913.797 kb on + strand at 913.798 kb on - strand at 913.798 kb on - strand at 913.798 kb on - strand at 913.798 kb on - strand at 913.798 kb on - strand at 913.798 kb on - strand at 913.798 kb on - strand at 913.798 kb on - strand at 913.872 kb on - strand at 913.883 kb on - strand at 913.932 kb on + strand at 913.932 kb on + strand at 913.932 kb on + strand at 913.933 kb on - strand at 913.933 kb on - strand at 913.933 kb on - strand at 914.155 kb on + strand, within HGI48_RS04360 at 914.156 kb on - strand, within HGI48_RS04360 at 914.156 kb on - strand, within HGI48_RS04360 at 914.156 kb on - strand, within HGI48_RS04360 at 914.156 kb on - strand, within HGI48_RS04360 at 914.158 kb on + strand, within HGI48_RS04360 at 914.158 kb on + strand, within HGI48_RS04360 at 914.158 kb on + strand, within HGI48_RS04360 at 914.158 kb on + strand, within HGI48_RS04360 at 914.158 kb on + strand, within HGI48_RS04360 at 914.159 kb on - strand, within HGI48_RS04360 at 914.159 kb on - strand, within HGI48_RS04360 at 914.159 kb on - strand, within HGI48_RS04360 at 914.159 kb on - strand at 914.159 kb on - strand, within HGI48_RS04360 at 914.159 kb on - strand, within HGI48_RS04360 at 914.179 kb on + strand, within HGI48_RS04360 at 914.299 kb on + strand, within HGI48_RS04360 at 914.299 kb on + strand, within HGI48_RS04360 at 914.299 kb on + strand, within HGI48_RS04360 at 914.300 kb on - strand, within HGI48_RS04360 at 914.314 kb on + strand at 914.314 kb on + strand, within HGI48_RS04360 at 914.315 kb on - strand, within HGI48_RS04360 at 914.315 kb on - strand, within HGI48_RS04360 at 914.368 kb on + strand at 914.369 kb on - strand at 914.369 kb on - strand at 914.430 kb on + strand at 914.430 kb on + strand at 914.430 kb on + strand at 914.431 kb on - strand at 914.431 kb on - strand at 914.431 kb on - strand at 914.530 kb on + strand at 914.612 kb on - strand at 914.612 kb on - strand at 914.644 kb on + strand at 914.645 kb on - strand at 914.645 kb on - strand at 914.645 kb on - strand at 914.645 kb on - strand at 914.696 kb on + strand at 914.733 kb on + strand at 914.733 kb on + strand at 914.733 kb on + strand at 914.733 kb on + strand at 914.734 kb on - strand at 914.857 kb on + strand at 914.857 kb on + strand at 914.857 kb on + strand at 914.858 kb on - strand at 914.858 kb on - strand at 914.880 kb on + strand at 914.880 kb on + strand at 914.880 kb on + strand at 914.880 kb on + strand at 914.880 kb on + strand at 914.881 kb on - strand at 914.881 kb on - strand at 915.165 kb on + strand, within HGI48_RS04365 at 915.166 kb on - strand at 915.303 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 913,007 - HGI48_RS04355 0.22 -2.0 913,221 - HGI48_RS04355 0.45 -1.1 913,242 - HGI48_RS04355 0.47 +0.4 913,251 - HGI48_RS04355 0.48 +2.0 913,363 + HGI48_RS04355 0.60 -0.4 913,428 - HGI48_RS04355 0.67 +0.1 913,568 - HGI48_RS04355 0.82 +1.3 913,636 - +0.0 913,688 - +2.4 913,735 - +0.4 913,735 - -0.2 913,735 - +0.2 913,745 - +0.1 913,772 + +0.6 913,772 + +0.3 913,785 + -2.2 913,785 + +0.2 913,785 + +0.3 913,785 + -2.4 913,786 - -1.5 913,788 + -0.1 913,788 + -0.4 913,794 + +0.2 913,794 + +0.6 913,795 - -2.2 913,795 - +0.9 913,795 - -1.4 913,795 - -1.6 913,795 - +1.1 913,795 - -0.4 913,795 - -0.7 913,797 + -1.7 913,797 + +0.0 913,797 + +1.2 913,797 + -0.2 913,797 + +1.9 913,797 + -0.4 913,797 + -0.6 913,798 - +0.6 913,798 - -1.2 913,798 - -0.0 913,798 - +0.3 913,798 - -0.0 913,798 - +0.8 913,798 - -2.2 913,798 - +0.0 913,872 - +0.4 913,883 - +0.6 913,932 + +0.4 913,932 + -2.0 913,932 + -0.6 913,933 - -0.8 913,933 - +0.7 913,933 - -1.4 914,155 + HGI48_RS04360 0.49 +0.2 914,156 - HGI48_RS04360 0.49 +1.0 914,156 - HGI48_RS04360 0.49 -1.7 914,156 - HGI48_RS04360 0.49 -0.4 914,156 - HGI48_RS04360 0.49 +0.4 914,158 + HGI48_RS04360 0.49 -0.7 914,158 + HGI48_RS04360 0.49 -0.3 914,158 + HGI48_RS04360 0.49 -1.4 914,158 + HGI48_RS04360 0.49 +1.0 914,158 + HGI48_RS04360 0.49 -0.4 914,159 - HGI48_RS04360 0.50 -1.0 914,159 - HGI48_RS04360 0.50 -0.4 914,159 - HGI48_RS04360 0.50 +0.5 914,159 - +1.9 914,159 - HGI48_RS04360 0.50 +0.3 914,159 - HGI48_RS04360 0.50 -1.7 914,179 + HGI48_RS04360 0.54 +0.2 914,299 + HGI48_RS04360 0.82 +0.8 914,299 + HGI48_RS04360 0.82 -3.7 914,299 + HGI48_RS04360 0.82 -0.5 914,300 - HGI48_RS04360 0.83 +0.6 914,314 + -1.0 914,314 + HGI48_RS04360 0.86 +0.2 914,315 - HGI48_RS04360 0.86 +0.7 914,315 - HGI48_RS04360 0.86 +1.1 914,368 + -1.1 914,369 - -0.2 914,369 - -1.1 914,430 + -2.4 914,430 + -1.0 914,430 + -2.0 914,431 - -0.4 914,431 - -0.7 914,431 - -0.1 914,530 + -0.7 914,612 - -0.1 914,612 - -0.4 914,644 + +1.0 914,645 - -0.0 914,645 - -2.1 914,645 - +0.1 914,645 - -0.7 914,696 + +1.2 914,733 + -1.0 914,733 + +0.0 914,733 + -1.7 914,733 + +0.3 914,734 - +0.0 914,857 + -1.0 914,857 + -1.7 914,857 + +0.1 914,858 - +0.2 914,858 - -0.1 914,880 + -0.5 914,880 + +0.6 914,880 + +0.3 914,880 + -1.4 914,880 + +0.6 914,881 - +1.2 914,881 - +1.2 915,165 + HGI48_RS04365 0.44 +1.0 915,166 - +1.0 915,303 + -1.0
Or see this region's nucleotide sequence