Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS04075 and HGI48_RS04080 are separated by 843 nucleotides HGI48_RS04080 and HGI48_RS04085 are separated by 48 nucleotides HGI48_RS04085 and HGI48_RS04090 overlap by 4 nucleotides
HGI48_RS04075: HGI48_RS04075 - DUF945 domain-containing protein, at 861,200 to 862,030
_RS04075
HGI48_RS04080: HGI48_RS04080 - type II toxin-antitoxin system RelB/DinJ family antitoxin, at 862,874 to 863,065
_RS04080
HGI48_RS04085: HGI48_RS04085 - hypothetical protein, at 863,114 to 864,034
_RS04085
HGI48_RS04090: HGI48_RS04090 - hypothetical protein, at 864,031 to 864,279
_RS04090
Position (kb) 862
863
864 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 861.890 kb on - strand, within HGI48_RS04075 at 861.891 kb on + strand, within HGI48_RS04075 at 861.891 kb on + strand, within HGI48_RS04075 at 861.891 kb on + strand, within HGI48_RS04075 at 861.891 kb on + strand, within HGI48_RS04075 at 861.891 kb on + strand, within HGI48_RS04075 at 861.891 kb on + strand, within HGI48_RS04075 at 861.891 kb on + strand, within HGI48_RS04075 at 861.892 kb on - strand, within HGI48_RS04075 at 861.892 kb on - strand, within HGI48_RS04075 at 861.892 kb on - strand, within HGI48_RS04075 at 861.892 kb on - strand, within HGI48_RS04075 at 861.892 kb on - strand at 861.892 kb on - strand, within HGI48_RS04075 at 861.892 kb on - strand, within HGI48_RS04075 at 861.892 kb on - strand, within HGI48_RS04075 at 861.892 kb on - strand, within HGI48_RS04075 at 861.892 kb on - strand, within HGI48_RS04075 at 862.083 kb on + strand at 862.084 kb on - strand at 862.295 kb on + strand at 862.295 kb on + strand at 862.296 kb on - strand at 862.296 kb on - strand at 862.413 kb on + strand at 862.413 kb on + strand at 862.431 kb on - strand at 862.583 kb on + strand at 862.583 kb on + strand at 862.584 kb on - strand at 862.584 kb on - strand at 862.584 kb on - strand at 862.713 kb on + strand at 862.807 kb on - strand at 862.807 kb on - strand at 862.816 kb on + strand at 862.817 kb on - strand at 862.849 kb on + strand at 862.849 kb on + strand at 862.849 kb on + strand at 862.849 kb on + strand at 862.849 kb on + strand at 862.849 kb on + strand at 862.849 kb on + strand at 862.849 kb on + strand at 862.849 kb on + strand at 862.850 kb on - strand at 862.850 kb on - strand at 862.850 kb on - strand at 862.850 kb on - strand at 862.850 kb on - strand at 862.850 kb on - strand at 862.850 kb on - strand at 862.850 kb on - strand at 862.850 kb on - strand at 862.850 kb on - strand at 862.850 kb on - strand at 862.916 kb on - strand, within HGI48_RS04080 at 862.916 kb on - strand, within HGI48_RS04080 at 863.047 kb on + strand at 863.048 kb on - strand at 863.050 kb on + strand at 863.050 kb on + strand at 863.051 kb on - strand at 863.051 kb on - strand at 863.051 kb on - strand at 863.085 kb on + strand at 863.125 kb on - strand at 863.134 kb on + strand at 863.134 kb on + strand at 863.134 kb on + strand at 863.134 kb on + strand at 863.135 kb on - strand at 863.139 kb on - strand at 863.285 kb on + strand, within HGI48_RS04085 at 863.318 kb on + strand, within HGI48_RS04085 at 863.318 kb on + strand, within HGI48_RS04085 at 863.318 kb on + strand, within HGI48_RS04085 at 863.318 kb on + strand, within HGI48_RS04085 at 863.319 kb on - strand, within HGI48_RS04085 at 863.319 kb on - strand, within HGI48_RS04085 at 863.402 kb on + strand, within HGI48_RS04085 at 863.403 kb on - strand, within HGI48_RS04085 at 863.523 kb on - strand, within HGI48_RS04085 at 863.523 kb on - strand, within HGI48_RS04085 at 863.694 kb on + strand, within HGI48_RS04085 at 863.695 kb on - strand, within HGI48_RS04085 at 863.695 kb on - strand, within HGI48_RS04085 at 863.814 kb on - strand at 863.849 kb on + strand, within HGI48_RS04085 at 863.849 kb on + strand, within HGI48_RS04085 at 863.849 kb on + strand, within HGI48_RS04085 at 863.850 kb on - strand, within HGI48_RS04085 at 863.850 kb on - strand, within HGI48_RS04085 at 863.895 kb on + strand, within HGI48_RS04085 at 863.896 kb on - strand, within HGI48_RS04085 at 863.932 kb on + strand, within HGI48_RS04085 at 863.932 kb on + strand, within HGI48_RS04085 at 863.933 kb on - strand, within HGI48_RS04085 at 863.933 kb on - strand, within HGI48_RS04085 at 863.933 kb on - strand, within HGI48_RS04085 at 863.950 kb on + strand at 863.950 kb on + strand at 863.950 kb on + strand at 863.950 kb on + strand at 863.951 kb on - strand at 863.951 kb on - strand at 863.951 kb on - strand at 863.978 kb on + strand at 863.978 kb on + strand at 863.979 kb on - strand at 863.979 kb on - strand at 863.979 kb on - strand at 863.979 kb on - strand at 863.979 kb on - strand at 863.979 kb on - strand at 863.979 kb on - strand at 863.979 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 861,890 - HGI48_RS04075 0.83 -0.6 861,891 + HGI48_RS04075 0.83 +0.6 861,891 + HGI48_RS04075 0.83 -2.0 861,891 + HGI48_RS04075 0.83 +0.1 861,891 + HGI48_RS04075 0.83 -1.0 861,891 + HGI48_RS04075 0.83 +0.8 861,891 + HGI48_RS04075 0.83 -0.5 861,891 + HGI48_RS04075 0.83 +0.6 861,892 - HGI48_RS04075 0.83 +0.9 861,892 - HGI48_RS04075 0.83 -1.4 861,892 - HGI48_RS04075 0.83 +1.3 861,892 - HGI48_RS04075 0.83 +0.9 861,892 - +0.6 861,892 - HGI48_RS04075 0.83 -0.8 861,892 - HGI48_RS04075 0.83 -2.8 861,892 - HGI48_RS04075 0.83 -0.4 861,892 - HGI48_RS04075 0.83 +0.6 861,892 - HGI48_RS04075 0.83 -0.7 862,083 + -1.0 862,084 - +3.2 862,295 + -1.2 862,295 + -0.6 862,296 - -0.7 862,296 - +0.7 862,413 + +0.2 862,413 + -1.7 862,431 - -2.7 862,583 + -1.0 862,583 + +1.5 862,584 - -0.7 862,584 - +0.6 862,584 - -0.4 862,713 + +0.3 862,807 - +0.0 862,807 - +1.0 862,816 + -0.8 862,817 - -0.5 862,849 + +2.0 862,849 + -0.4 862,849 + -0.2 862,849 + +0.0 862,849 + +1.0 862,849 + -0.2 862,849 + +0.5 862,849 + -0.4 862,849 + -0.5 862,850 - -2.5 862,850 - -1.0 862,850 - +0.6 862,850 - +0.0 862,850 - +0.9 862,850 - -0.2 862,850 - +0.0 862,850 - +0.0 862,850 - +0.6 862,850 - +1.6 862,850 - -1.4 862,916 - HGI48_RS04080 0.22 -0.7 862,916 - HGI48_RS04080 0.22 -0.4 863,047 + -0.7 863,048 - -0.1 863,050 + +0.2 863,050 + +0.6 863,051 - -0.6 863,051 - +0.2 863,051 - +0.3 863,085 + -1.2 863,125 - -3.2 863,134 + -1.7 863,134 + -0.1 863,134 + +0.0 863,134 + -0.4 863,135 - -1.0 863,139 - +1.0 863,285 + HGI48_RS04085 0.19 +0.4 863,318 + HGI48_RS04085 0.22 +0.4 863,318 + HGI48_RS04085 0.22 +0.4 863,318 + HGI48_RS04085 0.22 -1.5 863,318 + HGI48_RS04085 0.22 -0.2 863,319 - HGI48_RS04085 0.22 -1.9 863,319 - HGI48_RS04085 0.22 -1.4 863,402 + HGI48_RS04085 0.31 +1.4 863,403 - HGI48_RS04085 0.31 +0.6 863,523 - HGI48_RS04085 0.44 -1.7 863,523 - HGI48_RS04085 0.44 +0.5 863,694 + HGI48_RS04085 0.63 +0.3 863,695 - HGI48_RS04085 0.63 +0.5 863,695 - HGI48_RS04085 0.63 -0.1 863,814 - +2.9 863,849 + HGI48_RS04085 0.80 -1.0 863,849 + HGI48_RS04085 0.80 -2.2 863,849 + HGI48_RS04085 0.80 -0.9 863,850 - HGI48_RS04085 0.80 +0.3 863,850 - HGI48_RS04085 0.80 -1.8 863,895 + HGI48_RS04085 0.85 +0.0 863,896 - HGI48_RS04085 0.85 +2.0 863,932 + HGI48_RS04085 0.89 -0.2 863,932 + HGI48_RS04085 0.89 -0.3 863,933 - HGI48_RS04085 0.89 -2.5 863,933 - HGI48_RS04085 0.89 -0.3 863,933 - HGI48_RS04085 0.89 +0.2 863,950 + +1.3 863,950 + +0.8 863,950 + +1.1 863,950 + +0.1 863,951 - -1.4 863,951 - -0.8 863,951 - -1.0 863,978 + +0.3 863,978 + -0.3 863,979 - -0.7 863,979 - -0.4 863,979 - -0.2 863,979 - -1.4 863,979 - -1.7 863,979 - -2.0 863,979 - -0.4 863,979 - -0.4
Or see this region's nucleotide sequence