Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS03735

Experiment: PDB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS03730 and HGI48_RS03735 are separated by 44 nucleotidesHGI48_RS03735 and HGI48_RS03740 are separated by 528 nucleotides HGI48_RS03730: HGI48_RS03730 - CoA-acylating methylmalonate-semialdehyde dehydrogenase, at 792,313 to 793,824 _RS03730 HGI48_RS03735: HGI48_RS03735 - 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing), at 793,869 to 795,800 _RS03735 HGI48_RS03740: HGI48_RS03740 - inositol 2-dehydrogenase, at 796,329 to 797,315 _RS03740 Position (kb) 793 794 795 796Strain fitness (log2 ratio) -2 -1 0 1 2 3at 792.906 kb on - strand, within HGI48_RS03730at 792.910 kb on - strandat 792.910 kb on - strandat 792.910 kb on - strand, within HGI48_RS03730at 793.006 kb on + strand, within HGI48_RS03730at 793.006 kb on + strand, within HGI48_RS03730at 793.007 kb on - strand, within HGI48_RS03730at 793.007 kb on - strand, within HGI48_RS03730at 793.012 kb on + strand, within HGI48_RS03730at 793.013 kb on - strand, within HGI48_RS03730at 793.074 kb on + strand, within HGI48_RS03730at 793.074 kb on + strand, within HGI48_RS03730at 793.074 kb on + strand, within HGI48_RS03730at 793.074 kb on + strand, within HGI48_RS03730at 793.075 kb on - strand, within HGI48_RS03730at 793.075 kb on - strand, within HGI48_RS03730at 793.325 kb on - strandat 793.326 kb on + strand, within HGI48_RS03730at 793.327 kb on - strand, within HGI48_RS03730at 793.327 kb on - strand, within HGI48_RS03730at 793.405 kb on + strand, within HGI48_RS03730at 793.405 kb on + strand, within HGI48_RS03730at 793.406 kb on - strand, within HGI48_RS03730at 793.406 kb on - strand, within HGI48_RS03730at 793.406 kb on - strand, within HGI48_RS03730at 793.406 kb on - strand, within HGI48_RS03730at 793.457 kb on - strandat 793.544 kb on - strandat 793.563 kb on - strand, within HGI48_RS03730at 793.629 kb on + strand, within HGI48_RS03730at 793.708 kb on + strandat 793.709 kb on - strandat 793.709 kb on - strandat 793.733 kb on - strandat 793.822 kb on + strandat 793.874 kb on + strandat 793.874 kb on + strandat 793.874 kb on + strandat 793.875 kb on - strandat 793.875 kb on - strandat 793.875 kb on - strandat 793.926 kb on + strandat 793.926 kb on + strandat 793.926 kb on + strandat 793.926 kb on + strandat 794.058 kb on - strandat 794.121 kb on + strand, within HGI48_RS03735at 794.121 kb on + strand, within HGI48_RS03735at 794.195 kb on + strand, within HGI48_RS03735at 794.291 kb on + strandat 794.291 kb on + strand, within HGI48_RS03735at 794.291 kb on + strand, within HGI48_RS03735at 794.292 kb on - strand, within HGI48_RS03735at 794.294 kb on + strand, within HGI48_RS03735at 794.485 kb on + strand, within HGI48_RS03735at 794.636 kb on + strand, within HGI48_RS03735at 794.636 kb on + strand, within HGI48_RS03735at 794.637 kb on - strand, within HGI48_RS03735at 795.090 kb on + strand, within HGI48_RS03735at 795.143 kb on - strand, within HGI48_RS03735at 795.143 kb on - strand, within HGI48_RS03735at 795.240 kb on + strand, within HGI48_RS03735at 795.240 kb on + strand, within HGI48_RS03735at 795.240 kb on + strand, within HGI48_RS03735at 795.241 kb on - strand, within HGI48_RS03735at 795.241 kb on - strand, within HGI48_RS03735at 795.252 kb on + strand, within HGI48_RS03735at 795.252 kb on + strand, within HGI48_RS03735at 795.253 kb on - strand, within HGI48_RS03735at 795.253 kb on - strand, within HGI48_RS03735at 795.258 kb on + strand, within HGI48_RS03735at 795.258 kb on + strand, within HGI48_RS03735at 795.273 kb on + strand, within HGI48_RS03735at 795.274 kb on - strand, within HGI48_RS03735at 795.274 kb on - strand, within HGI48_RS03735at 795.327 kb on + strand, within HGI48_RS03735at 795.328 kb on - strand, within HGI48_RS03735at 795.351 kb on + strand, within HGI48_RS03735at 795.351 kb on + strand, within HGI48_RS03735at 795.352 kb on - strand, within HGI48_RS03735at 795.352 kb on - strand, within HGI48_RS03735at 795.403 kb on + strand, within HGI48_RS03735at 795.446 kb on + strand, within HGI48_RS03735at 795.446 kb on + strand, within HGI48_RS03735at 795.446 kb on + strand, within HGI48_RS03735at 795.446 kb on + strand, within HGI48_RS03735at 795.447 kb on - strand, within HGI48_RS03735at 795.447 kb on - strand, within HGI48_RS03735at 795.772 kb on + strandat 795.772 kb on + strandat 795.773 kb on - strandat 795.773 kb on - strandat 795.795 kb on + strandat 795.795 kb on + strandat 795.795 kb on + strandat 795.796 kb on - strandat 795.796 kb on - strandat 795.798 kb on + strandat 795.799 kb on - strandat 795.799 kb on - strandat 795.799 kb on - strandat 795.799 kb on - strandat 795.884 kb on + strandat 795.885 kb on - strandat 795.907 kb on - strandat 796.010 kb on - strandat 796.049 kb on - strandat 796.082 kb on + strandat 796.082 kb on + strandat 796.082 kb on + strandat 796.083 kb on - strandat 796.085 kb on + strandat 796.098 kb on + strandat 796.098 kb on + strandat 796.099 kb on - strandat 796.166 kb on + strandat 796.177 kb on + strandat 796.177 kb on + strandat 796.177 kb on + strandat 796.177 kb on + strandat 796.178 kb on - strandat 796.178 kb on - strandat 796.178 kb on - strandat 796.262 kb on + strandat 796.262 kb on + strandat 796.263 kb on - strandat 796.263 kb on - strandat 796.263 kb on - strandat 796.287 kb on + strandat 796.335 kb on - strandat 796.414 kb on - strandat 796.464 kb on + strand, within HGI48_RS03740at 796.464 kb on + strand, within HGI48_RS03740at 796.464 kb on + strandat 796.465 kb on - strand, within HGI48_RS03740at 796.514 kb on - strand, within HGI48_RS03740at 796.769 kb on + strand, within HGI48_RS03740at 796.769 kb on + strandat 796.770 kb on - strand, within HGI48_RS03740at 796.770 kb on - strand, within HGI48_RS03740

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Per-strain Table

Position Strand Gene LocusTag Fraction PDB
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792,906 - HGI48_RS03730 0.39 +0.6
792,910 - -0.4
792,910 - +1.4
792,910 - HGI48_RS03730 0.39 -1.5
793,006 + HGI48_RS03730 0.46 +2.0
793,006 + HGI48_RS03730 0.46 -1.4
793,007 - HGI48_RS03730 0.46 +0.0
793,007 - HGI48_RS03730 0.46 -0.6
793,012 + HGI48_RS03730 0.46 -0.1
793,013 - HGI48_RS03730 0.46 -0.1
793,074 + HGI48_RS03730 0.50 -1.7
793,074 + HGI48_RS03730 0.50 +1.0
793,074 + HGI48_RS03730 0.50 -0.1
793,074 + HGI48_RS03730 0.50 -0.0
793,075 - HGI48_RS03730 0.50 -0.4
793,075 - HGI48_RS03730 0.50 +0.5
793,325 - +0.6
793,326 + HGI48_RS03730 0.67 -1.7
793,327 - HGI48_RS03730 0.67 -0.7
793,327 - HGI48_RS03730 0.67 +0.1
793,405 + HGI48_RS03730 0.72 +0.8
793,405 + HGI48_RS03730 0.72 +0.6
793,406 - HGI48_RS03730 0.72 -1.4
793,406 - HGI48_RS03730 0.72 -0.5
793,406 - HGI48_RS03730 0.72 -1.2
793,406 - HGI48_RS03730 0.72 -0.8
793,457 - +0.0
793,544 - +0.6
793,563 - HGI48_RS03730 0.83 +0.4
793,629 + HGI48_RS03730 0.87 +0.6
793,708 + -2.1
793,709 - -0.3
793,709 - +1.1
793,733 - -0.2
793,822 + +3.4
793,874 + -0.0
793,874 + +0.2
793,874 + -2.0
793,875 - +0.9
793,875 - +0.6
793,875 - +0.0
793,926 + +0.5
793,926 + -0.4
793,926 + +1.4
793,926 + -1.7
794,058 - -0.4
794,121 + HGI48_RS03735 0.13 +1.8
794,121 + HGI48_RS03735 0.13 +0.5
794,195 + HGI48_RS03735 0.17 -0.4
794,291 + +2.0
794,291 + HGI48_RS03735 0.22 -0.9
794,291 + HGI48_RS03735 0.22 -1.7
794,292 - HGI48_RS03735 0.22 +1.7
794,294 + HGI48_RS03735 0.22 -1.0
794,485 + HGI48_RS03735 0.32 -0.2
794,636 + HGI48_RS03735 0.40 +0.0
794,636 + HGI48_RS03735 0.40 +1.1
794,637 - HGI48_RS03735 0.40 +0.9
795,090 + HGI48_RS03735 0.63 +0.8
795,143 - HGI48_RS03735 0.66 +0.8
795,143 - HGI48_RS03735 0.66 +0.8
795,240 + HGI48_RS03735 0.71 -0.4
795,240 + HGI48_RS03735 0.71 -2.0
795,240 + HGI48_RS03735 0.71 +1.8
795,241 - HGI48_RS03735 0.71 -0.5
795,241 - HGI48_RS03735 0.71 +0.2
795,252 + HGI48_RS03735 0.72 -0.8
795,252 + HGI48_RS03735 0.72 +1.0
795,253 - HGI48_RS03735 0.72 -2.4
795,253 - HGI48_RS03735 0.72 -0.3
795,258 + HGI48_RS03735 0.72 -0.1
795,258 + HGI48_RS03735 0.72 -0.6
795,273 + HGI48_RS03735 0.73 +0.6
795,274 - HGI48_RS03735 0.73 +0.4
795,274 - HGI48_RS03735 0.73 +0.4
795,327 + HGI48_RS03735 0.75 +0.0
795,328 - HGI48_RS03735 0.76 +0.0
795,351 + HGI48_RS03735 0.77 +0.0
795,351 + HGI48_RS03735 0.77 -0.3
795,352 - HGI48_RS03735 0.77 +1.1
795,352 - HGI48_RS03735 0.77 +1.5
795,403 + HGI48_RS03735 0.79 +0.7
795,446 + HGI48_RS03735 0.82 +0.4
795,446 + HGI48_RS03735 0.82 +0.9
795,446 + HGI48_RS03735 0.82 -0.1
795,446 + HGI48_RS03735 0.82 +1.1
795,447 - HGI48_RS03735 0.82 -0.2
795,447 - HGI48_RS03735 0.82 +1.2
795,772 + +0.6
795,772 + +0.2
795,773 - -0.8
795,773 - -1.7
795,795 + +0.5
795,795 + -0.5
795,795 + -1.7
795,796 - +1.0
795,796 - +0.8
795,798 + +0.4
795,799 - -1.0
795,799 - +0.1
795,799 - -2.4
795,799 - -0.6
795,884 + +0.0
795,885 - +1.0
795,907 - -1.0
796,010 - +1.0
796,049 - -1.0
796,082 + -0.1
796,082 + +1.1
796,082 + +1.9
796,083 - -2.2
796,085 + -1.0
796,098 + -1.7
796,098 + -0.6
796,099 - -0.2
796,166 + -1.0
796,177 + +1.9
796,177 + -0.5
796,177 + +0.6
796,177 + +0.3
796,178 - -1.7
796,178 - +0.4
796,178 - -1.7
796,262 + +1.3
796,262 + -0.7
796,263 - -1.4
796,263 - -0.4
796,263 - -1.7
796,287 + -0.0
796,335 - -0.3
796,414 - +1.6
796,464 + HGI48_RS03740 0.14 +0.6
796,464 + HGI48_RS03740 0.14 +0.3
796,464 + +1.4
796,465 - HGI48_RS03740 0.14 -1.0
796,514 - HGI48_RS03740 0.19 +0.6
796,769 + HGI48_RS03740 0.45 -1.1
796,769 + -1.0
796,770 - HGI48_RS03740 0.45 -0.1
796,770 - HGI48_RS03740 0.45 -0.1

Or see this region's nucleotide sequence