Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS03675 and HGI48_RS03680 are separated by 356 nucleotides HGI48_RS03680 and HGI48_RS03685 are separated by 144 nucleotides HGI48_RS03685 and HGI48_RS03690 are separated by 108 nucleotides HGI48_RS03690 and HGI48_RS03695 are separated by 114 nucleotides
HGI48_RS03675: HGI48_RS03675 - pyruvate:ferredoxin (flavodoxin) oxidoreductase, at 779,387 to 782,920
_RS03675
HGI48_RS03680: HGI48_RS03680 - hypothetical protein, at 783,277 to 783,699
_RS03680
HGI48_RS03685: HGI48_RS03685 - GNAT family N-acetyltransferase, at 783,844 to 784,389
_RS03685
HGI48_RS03690: HGI48_RS03690 - YnfC family lipoprotein, at 784,498 to 785,223
_RS03690
HGI48_RS03695: HGI48_RS03695 - glycoside hydrolase 43 family protein, at 785,338 to 786,906
_RS03695
Position (kb) 783
784
785 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 782.850 kb on + strand at 782.850 kb on + strand at 782.850 kb on + strand at 782.850 kb on + strand at 782.851 kb on - strand at 782.851 kb on - strand at 782.854 kb on + strand at 782.855 kb on - strand at 782.860 kb on + strand at 782.899 kb on + strand at 782.925 kb on + strand at 782.926 kb on - strand at 782.926 kb on - strand at 782.926 kb on - strand at 782.966 kb on - strand at 782.968 kb on + strand at 782.969 kb on - strand at 782.969 kb on - strand at 783.000 kb on - strand at 783.001 kb on + strand at 783.001 kb on + strand at 783.002 kb on - strand at 783.002 kb on - strand at 783.028 kb on + strand at 783.029 kb on - strand at 783.029 kb on - strand at 783.060 kb on + strand at 783.108 kb on - strand at 783.121 kb on + strand at 783.122 kb on - strand at 783.131 kb on + strand at 783.131 kb on + strand at 783.198 kb on + strand at 783.214 kb on + strand at 783.214 kb on + strand at 783.215 kb on - strand at 783.215 kb on - strand at 783.215 kb on - strand at 783.225 kb on + strand at 783.276 kb on + strand at 783.276 kb on + strand at 783.276 kb on + strand at 783.277 kb on - strand at 783.277 kb on - strand at 783.277 kb on - strand at 783.277 kb on - strand at 783.282 kb on + strand at 783.311 kb on + strand at 783.311 kb on + strand at 783.312 kb on - strand at 783.312 kb on - strand at 783.338 kb on - strand, within HGI48_RS03680 at 783.363 kb on + strand, within HGI48_RS03680 at 783.364 kb on - strand, within HGI48_RS03680 at 783.364 kb on - strand, within HGI48_RS03680 at 783.364 kb on - strand at 783.364 kb on - strand, within HGI48_RS03680 at 783.450 kb on + strand, within HGI48_RS03680 at 783.450 kb on + strand, within HGI48_RS03680 at 783.450 kb on + strand, within HGI48_RS03680 at 783.450 kb on + strand, within HGI48_RS03680 at 783.450 kb on + strand at 783.450 kb on + strand, within HGI48_RS03680 at 783.450 kb on + strand, within HGI48_RS03680 at 783.450 kb on + strand, within HGI48_RS03680 at 783.451 kb on - strand, within HGI48_RS03680 at 783.451 kb on - strand, within HGI48_RS03680 at 783.454 kb on + strand, within HGI48_RS03680 at 783.455 kb on - strand at 783.643 kb on + strand, within HGI48_RS03680 at 783.644 kb on - strand, within HGI48_RS03680 at 783.691 kb on + strand at 783.691 kb on + strand at 783.692 kb on - strand at 783.692 kb on - strand at 783.721 kb on + strand at 783.721 kb on + strand at 783.788 kb on + strand at 783.788 kb on + strand at 784.048 kb on + strand, within HGI48_RS03685 at 784.048 kb on + strand, within HGI48_RS03685 at 784.048 kb on + strand, within HGI48_RS03685 at 784.232 kb on - strand, within HGI48_RS03685 at 784.272 kb on - strand, within HGI48_RS03685 at 784.354 kb on + strand at 784.354 kb on + strand at 784.355 kb on - strand at 784.355 kb on - strand at 784.355 kb on - strand at 784.355 kb on - strand at 784.355 kb on - strand at 784.444 kb on + strand at 784.445 kb on - strand at 784.445 kb on - strand at 784.481 kb on + strand at 784.482 kb on - strand at 784.482 kb on - strand at 784.497 kb on + strand at 784.498 kb on - strand at 784.498 kb on - strand at 784.505 kb on + strand at 784.505 kb on + strand at 784.506 kb on - strand at 784.684 kb on + strand, within HGI48_RS03690 at 784.684 kb on + strand, within HGI48_RS03690 at 784.684 kb on + strand, within HGI48_RS03690 at 784.684 kb on + strand, within HGI48_RS03690 at 784.684 kb on + strand, within HGI48_RS03690 at 784.685 kb on - strand, within HGI48_RS03690 at 784.685 kb on - strand, within HGI48_RS03690 at 784.685 kb on - strand, within HGI48_RS03690 at 784.685 kb on - strand, within HGI48_RS03690 at 784.685 kb on - strand at 784.685 kb on - strand, within HGI48_RS03690 at 784.685 kb on - strand at 784.736 kb on - strand, within HGI48_RS03690 at 784.888 kb on + strand, within HGI48_RS03690 at 784.888 kb on + strand, within HGI48_RS03690 at 784.888 kb on + strand, within HGI48_RS03690 at 784.889 kb on - strand, within HGI48_RS03690 at 784.910 kb on - strand, within HGI48_RS03690 at 784.910 kb on - strand, within HGI48_RS03690 at 784.910 kb on - strand, within HGI48_RS03690 at 784.940 kb on - strand, within HGI48_RS03690 at 784.940 kb on - strand, within HGI48_RS03690 at 784.945 kb on + strand, within HGI48_RS03690 at 784.946 kb on - strand, within HGI48_RS03690 at 785.013 kb on - strand at 785.076 kb on + strand, within HGI48_RS03690 at 785.077 kb on - strand, within HGI48_RS03690 at 785.077 kb on - strand, within HGI48_RS03690 at 785.077 kb on - strand, within HGI48_RS03690 at 785.113 kb on + strand, within HGI48_RS03690 at 785.199 kb on + strand at 785.199 kb on + strand at 785.199 kb on + strand at 785.199 kb on + strand at 785.199 kb on + strand at 785.199 kb on + strand at 785.200 kb on - strand at 785.200 kb on - strand at 785.200 kb on - strand at 785.200 kb on - strand at 785.200 kb on - strand at 785.216 kb on - strand at 785.216 kb on - strand at 785.218 kb on + strand at 785.218 kb on + strand at 785.218 kb on + strand at 785.219 kb on - strand at 785.219 kb on - strand at 785.219 kb on - strand at 785.219 kb on - strand at 785.219 kb on - strand at 785.221 kb on + strand at 785.222 kb on - strand at 785.222 kb on - strand at 785.286 kb on + strand at 785.286 kb on + strand at 785.286 kb on + strand at 785.286 kb on + strand at 785.286 kb on + strand at 785.287 kb on - strand at 785.287 kb on - strand at 785.287 kb on - strand at 785.287 kb on - strand at 785.287 kb on - strand at 785.289 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 782,850 + -0.3 782,850 + +1.3 782,850 + -0.3 782,850 + +0.5 782,851 - -2.4 782,851 - -0.4 782,854 + +0.8 782,855 - +0.6 782,860 + -2.0 782,899 + -2.0 782,925 + -2.2 782,926 - -0.3 782,926 - -1.7 782,926 - -0.6 782,966 - -0.8 782,968 + -1.7 782,969 - +0.4 782,969 - +1.3 783,000 - -0.1 783,001 + -2.4 783,001 + -1.0 783,002 - +1.0 783,002 - -0.4 783,028 + -1.4 783,029 - +0.2 783,029 - -0.6 783,060 + -2.4 783,108 - +0.3 783,121 + -1.7 783,122 - -0.1 783,131 + -1.9 783,131 + -0.4 783,198 + +0.3 783,214 + +1.3 783,214 + -0.2 783,215 - -0.6 783,215 - -0.7 783,215 - +0.7 783,225 + +0.3 783,276 + +1.9 783,276 + +0.8 783,276 + -1.5 783,277 - -0.5 783,277 - -0.4 783,277 - -2.2 783,277 - +1.1 783,282 + -2.7 783,311 + -0.6 783,311 + -1.1 783,312 - +0.0 783,312 - +1.1 783,338 - HGI48_RS03680 0.14 -0.4 783,363 + HGI48_RS03680 0.20 -0.6 783,364 - HGI48_RS03680 0.21 -0.0 783,364 - HGI48_RS03680 0.21 -1.5 783,364 - -1.0 783,364 - HGI48_RS03680 0.21 -3.2 783,450 + HGI48_RS03680 0.41 -0.6 783,450 + HGI48_RS03680 0.41 +0.9 783,450 + HGI48_RS03680 0.41 +0.1 783,450 + HGI48_RS03680 0.41 -0.3 783,450 + +1.0 783,450 + HGI48_RS03680 0.41 -0.6 783,450 + HGI48_RS03680 0.41 -2.4 783,450 + HGI48_RS03680 0.41 -2.5 783,451 - HGI48_RS03680 0.41 +0.6 783,451 - HGI48_RS03680 0.41 -0.9 783,454 + HGI48_RS03680 0.42 -1.4 783,455 - +0.6 783,643 + HGI48_RS03680 0.87 +0.8 783,644 - HGI48_RS03680 0.87 -3.0 783,691 + +1.1 783,691 + +1.6 783,692 - -2.4 783,692 - -0.2 783,721 + +1.0 783,721 + +1.0 783,788 + +0.3 783,788 + +0.5 784,048 + HGI48_RS03685 0.37 -0.4 784,048 + HGI48_RS03685 0.37 -0.7 784,048 + HGI48_RS03685 0.37 -1.0 784,232 - HGI48_RS03685 0.71 -0.4 784,272 - HGI48_RS03685 0.78 -2.0 784,354 + +2.2 784,354 + -1.2 784,355 - +0.2 784,355 - +0.9 784,355 - -0.7 784,355 - -0.1 784,355 - +0.6 784,444 + -1.2 784,445 - -0.6 784,445 - +0.3 784,481 + -1.5 784,482 - -0.7 784,482 - -0.2 784,497 + -0.4 784,498 - -0.0 784,498 - -0.2 784,505 + -1.4 784,505 + -0.2 784,506 - -2.0 784,684 + HGI48_RS03690 0.26 -0.4 784,684 + HGI48_RS03690 0.26 +0.8 784,684 + HGI48_RS03690 0.26 -3.2 784,684 + HGI48_RS03690 0.26 -0.7 784,684 + HGI48_RS03690 0.26 -0.4 784,685 - HGI48_RS03690 0.26 -0.6 784,685 - HGI48_RS03690 0.26 +1.4 784,685 - HGI48_RS03690 0.26 -0.4 784,685 - HGI48_RS03690 0.26 +1.1 784,685 - +2.0 784,685 - HGI48_RS03690 0.26 -0.4 784,685 - -0.4 784,736 - HGI48_RS03690 0.33 -0.2 784,888 + HGI48_RS03690 0.54 -1.5 784,888 + HGI48_RS03690 0.54 -1.4 784,888 + HGI48_RS03690 0.54 -0.1 784,889 - HGI48_RS03690 0.54 +0.9 784,910 - HGI48_RS03690 0.57 -2.5 784,910 - HGI48_RS03690 0.57 +0.6 784,910 - HGI48_RS03690 0.57 -0.2 784,940 - HGI48_RS03690 0.61 -0.2 784,940 - HGI48_RS03690 0.61 +0.6 784,945 + HGI48_RS03690 0.62 -0.3 784,946 - HGI48_RS03690 0.62 -0.1 785,013 - +1.9 785,076 + HGI48_RS03690 0.80 +0.1 785,077 - HGI48_RS03690 0.80 -1.4 785,077 - HGI48_RS03690 0.80 +1.4 785,077 - HGI48_RS03690 0.80 -1.2 785,113 + HGI48_RS03690 0.85 -0.3 785,199 + -0.0 785,199 + -0.4 785,199 + -0.4 785,199 + -0.9 785,199 + +0.6 785,199 + -1.4 785,200 - +0.3 785,200 - -1.0 785,200 - -1.0 785,200 - -0.7 785,200 - -1.7 785,216 - +0.0 785,216 - +1.3 785,218 + +0.3 785,218 + +2.0 785,218 + -0.9 785,219 - +0.5 785,219 - -1.7 785,219 - +0.3 785,219 - +0.3 785,219 - -2.1 785,221 + -0.4 785,222 - -0.2 785,222 - +2.0 785,286 + -1.1 785,286 + -0.6 785,286 + -1.6 785,286 + +2.2 785,286 + -0.4 785,287 - -0.7 785,287 - +0.0 785,287 - -0.1 785,287 - -0.7 785,287 - -0.8 785,289 - +0.3
Or see this region's nucleotide sequence