Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS03685

Experiment: PDB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS03675 and HGI48_RS03680 are separated by 356 nucleotidesHGI48_RS03680 and HGI48_RS03685 are separated by 144 nucleotidesHGI48_RS03685 and HGI48_RS03690 are separated by 108 nucleotidesHGI48_RS03690 and HGI48_RS03695 are separated by 114 nucleotides HGI48_RS03675: HGI48_RS03675 - pyruvate:ferredoxin (flavodoxin) oxidoreductase, at 779,387 to 782,920 _RS03675 HGI48_RS03680: HGI48_RS03680 - hypothetical protein, at 783,277 to 783,699 _RS03680 HGI48_RS03685: HGI48_RS03685 - GNAT family N-acetyltransferase, at 783,844 to 784,389 _RS03685 HGI48_RS03690: HGI48_RS03690 - YnfC family lipoprotein, at 784,498 to 785,223 _RS03690 HGI48_RS03695: HGI48_RS03695 - glycoside hydrolase 43 family protein, at 785,338 to 786,906 _RS03695 Position (kb) 783 784 785Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 782.850 kb on + strandat 782.850 kb on + strandat 782.850 kb on + strandat 782.850 kb on + strandat 782.851 kb on - strandat 782.851 kb on - strandat 782.854 kb on + strandat 782.855 kb on - strandat 782.860 kb on + strandat 782.899 kb on + strandat 782.925 kb on + strandat 782.926 kb on - strandat 782.926 kb on - strandat 782.926 kb on - strandat 782.966 kb on - strandat 782.968 kb on + strandat 782.969 kb on - strandat 782.969 kb on - strandat 783.000 kb on - strandat 783.001 kb on + strandat 783.001 kb on + strandat 783.002 kb on - strandat 783.002 kb on - strandat 783.028 kb on + strandat 783.029 kb on - strandat 783.029 kb on - strandat 783.060 kb on + strandat 783.108 kb on - strandat 783.121 kb on + strandat 783.122 kb on - strandat 783.131 kb on + strandat 783.131 kb on + strandat 783.198 kb on + strandat 783.214 kb on + strandat 783.214 kb on + strandat 783.215 kb on - strandat 783.215 kb on - strandat 783.215 kb on - strandat 783.225 kb on + strandat 783.276 kb on + strandat 783.276 kb on + strandat 783.276 kb on + strandat 783.277 kb on - strandat 783.277 kb on - strandat 783.277 kb on - strandat 783.277 kb on - strandat 783.282 kb on + strandat 783.311 kb on + strandat 783.311 kb on + strandat 783.312 kb on - strandat 783.312 kb on - strandat 783.338 kb on - strand, within HGI48_RS03680at 783.363 kb on + strand, within HGI48_RS03680at 783.364 kb on - strand, within HGI48_RS03680at 783.364 kb on - strand, within HGI48_RS03680at 783.364 kb on - strandat 783.364 kb on - strand, within HGI48_RS03680at 783.450 kb on + strand, within HGI48_RS03680at 783.450 kb on + strand, within HGI48_RS03680at 783.450 kb on + strand, within HGI48_RS03680at 783.450 kb on + strand, within HGI48_RS03680at 783.450 kb on + strandat 783.450 kb on + strand, within HGI48_RS03680at 783.450 kb on + strand, within HGI48_RS03680at 783.450 kb on + strand, within HGI48_RS03680at 783.451 kb on - strand, within HGI48_RS03680at 783.451 kb on - strand, within HGI48_RS03680at 783.454 kb on + strand, within HGI48_RS03680at 783.455 kb on - strandat 783.643 kb on + strand, within HGI48_RS03680at 783.644 kb on - strand, within HGI48_RS03680at 783.691 kb on + strandat 783.691 kb on + strandat 783.692 kb on - strandat 783.692 kb on - strandat 783.721 kb on + strandat 783.721 kb on + strandat 783.788 kb on + strandat 783.788 kb on + strandat 784.048 kb on + strand, within HGI48_RS03685at 784.048 kb on + strand, within HGI48_RS03685at 784.048 kb on + strand, within HGI48_RS03685at 784.232 kb on - strand, within HGI48_RS03685at 784.272 kb on - strand, within HGI48_RS03685at 784.354 kb on + strandat 784.354 kb on + strandat 784.355 kb on - strandat 784.355 kb on - strandat 784.355 kb on - strandat 784.355 kb on - strandat 784.355 kb on - strandat 784.444 kb on + strandat 784.445 kb on - strandat 784.445 kb on - strandat 784.481 kb on + strandat 784.482 kb on - strandat 784.482 kb on - strandat 784.497 kb on + strandat 784.498 kb on - strandat 784.498 kb on - strandat 784.505 kb on + strandat 784.505 kb on + strandat 784.506 kb on - strandat 784.684 kb on + strand, within HGI48_RS03690at 784.684 kb on + strand, within HGI48_RS03690at 784.684 kb on + strand, within HGI48_RS03690at 784.684 kb on + strand, within HGI48_RS03690at 784.684 kb on + strand, within HGI48_RS03690at 784.685 kb on - strand, within HGI48_RS03690at 784.685 kb on - strand, within HGI48_RS03690at 784.685 kb on - strand, within HGI48_RS03690at 784.685 kb on - strand, within HGI48_RS03690at 784.685 kb on - strandat 784.685 kb on - strand, within HGI48_RS03690at 784.685 kb on - strandat 784.736 kb on - strand, within HGI48_RS03690at 784.888 kb on + strand, within HGI48_RS03690at 784.888 kb on + strand, within HGI48_RS03690at 784.888 kb on + strand, within HGI48_RS03690at 784.889 kb on - strand, within HGI48_RS03690at 784.910 kb on - strand, within HGI48_RS03690at 784.910 kb on - strand, within HGI48_RS03690at 784.910 kb on - strand, within HGI48_RS03690at 784.940 kb on - strand, within HGI48_RS03690at 784.940 kb on - strand, within HGI48_RS03690at 784.945 kb on + strand, within HGI48_RS03690at 784.946 kb on - strand, within HGI48_RS03690at 785.013 kb on - strandat 785.076 kb on + strand, within HGI48_RS03690at 785.077 kb on - strand, within HGI48_RS03690at 785.077 kb on - strand, within HGI48_RS03690at 785.077 kb on - strand, within HGI48_RS03690at 785.113 kb on + strand, within HGI48_RS03690at 785.199 kb on + strandat 785.199 kb on + strandat 785.199 kb on + strandat 785.199 kb on + strandat 785.199 kb on + strandat 785.199 kb on + strandat 785.200 kb on - strandat 785.200 kb on - strandat 785.200 kb on - strandat 785.200 kb on - strandat 785.200 kb on - strandat 785.216 kb on - strandat 785.216 kb on - strandat 785.218 kb on + strandat 785.218 kb on + strandat 785.218 kb on + strandat 785.219 kb on - strandat 785.219 kb on - strandat 785.219 kb on - strandat 785.219 kb on - strandat 785.219 kb on - strandat 785.221 kb on + strandat 785.222 kb on - strandat 785.222 kb on - strandat 785.286 kb on + strandat 785.286 kb on + strandat 785.286 kb on + strandat 785.286 kb on + strandat 785.286 kb on + strandat 785.287 kb on - strandat 785.287 kb on - strandat 785.287 kb on - strandat 785.287 kb on - strandat 785.287 kb on - strandat 785.289 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PDB
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782,850 + -0.3
782,850 + +1.3
782,850 + -0.3
782,850 + +0.5
782,851 - -2.4
782,851 - -0.4
782,854 + +0.8
782,855 - +0.6
782,860 + -2.0
782,899 + -2.0
782,925 + -2.2
782,926 - -0.3
782,926 - -1.7
782,926 - -0.6
782,966 - -0.8
782,968 + -1.7
782,969 - +0.4
782,969 - +1.3
783,000 - -0.1
783,001 + -2.4
783,001 + -1.0
783,002 - +1.0
783,002 - -0.4
783,028 + -1.4
783,029 - +0.2
783,029 - -0.6
783,060 + -2.4
783,108 - +0.3
783,121 + -1.7
783,122 - -0.1
783,131 + -1.9
783,131 + -0.4
783,198 + +0.3
783,214 + +1.3
783,214 + -0.2
783,215 - -0.6
783,215 - -0.7
783,215 - +0.7
783,225 + +0.3
783,276 + +1.9
783,276 + +0.8
783,276 + -1.5
783,277 - -0.5
783,277 - -0.4
783,277 - -2.2
783,277 - +1.1
783,282 + -2.7
783,311 + -0.6
783,311 + -1.1
783,312 - +0.0
783,312 - +1.1
783,338 - HGI48_RS03680 0.14 -0.4
783,363 + HGI48_RS03680 0.20 -0.6
783,364 - HGI48_RS03680 0.21 -0.0
783,364 - HGI48_RS03680 0.21 -1.5
783,364 - -1.0
783,364 - HGI48_RS03680 0.21 -3.2
783,450 + HGI48_RS03680 0.41 -0.6
783,450 + HGI48_RS03680 0.41 +0.9
783,450 + HGI48_RS03680 0.41 +0.1
783,450 + HGI48_RS03680 0.41 -0.3
783,450 + +1.0
783,450 + HGI48_RS03680 0.41 -0.6
783,450 + HGI48_RS03680 0.41 -2.4
783,450 + HGI48_RS03680 0.41 -2.5
783,451 - HGI48_RS03680 0.41 +0.6
783,451 - HGI48_RS03680 0.41 -0.9
783,454 + HGI48_RS03680 0.42 -1.4
783,455 - +0.6
783,643 + HGI48_RS03680 0.87 +0.8
783,644 - HGI48_RS03680 0.87 -3.0
783,691 + +1.1
783,691 + +1.6
783,692 - -2.4
783,692 - -0.2
783,721 + +1.0
783,721 + +1.0
783,788 + +0.3
783,788 + +0.5
784,048 + HGI48_RS03685 0.37 -0.4
784,048 + HGI48_RS03685 0.37 -0.7
784,048 + HGI48_RS03685 0.37 -1.0
784,232 - HGI48_RS03685 0.71 -0.4
784,272 - HGI48_RS03685 0.78 -2.0
784,354 + +2.2
784,354 + -1.2
784,355 - +0.2
784,355 - +0.9
784,355 - -0.7
784,355 - -0.1
784,355 - +0.6
784,444 + -1.2
784,445 - -0.6
784,445 - +0.3
784,481 + -1.5
784,482 - -0.7
784,482 - -0.2
784,497 + -0.4
784,498 - -0.0
784,498 - -0.2
784,505 + -1.4
784,505 + -0.2
784,506 - -2.0
784,684 + HGI48_RS03690 0.26 -0.4
784,684 + HGI48_RS03690 0.26 +0.8
784,684 + HGI48_RS03690 0.26 -3.2
784,684 + HGI48_RS03690 0.26 -0.7
784,684 + HGI48_RS03690 0.26 -0.4
784,685 - HGI48_RS03690 0.26 -0.6
784,685 - HGI48_RS03690 0.26 +1.4
784,685 - HGI48_RS03690 0.26 -0.4
784,685 - HGI48_RS03690 0.26 +1.1
784,685 - +2.0
784,685 - HGI48_RS03690 0.26 -0.4
784,685 - -0.4
784,736 - HGI48_RS03690 0.33 -0.2
784,888 + HGI48_RS03690 0.54 -1.5
784,888 + HGI48_RS03690 0.54 -1.4
784,888 + HGI48_RS03690 0.54 -0.1
784,889 - HGI48_RS03690 0.54 +0.9
784,910 - HGI48_RS03690 0.57 -2.5
784,910 - HGI48_RS03690 0.57 +0.6
784,910 - HGI48_RS03690 0.57 -0.2
784,940 - HGI48_RS03690 0.61 -0.2
784,940 - HGI48_RS03690 0.61 +0.6
784,945 + HGI48_RS03690 0.62 -0.3
784,946 - HGI48_RS03690 0.62 -0.1
785,013 - +1.9
785,076 + HGI48_RS03690 0.80 +0.1
785,077 - HGI48_RS03690 0.80 -1.4
785,077 - HGI48_RS03690 0.80 +1.4
785,077 - HGI48_RS03690 0.80 -1.2
785,113 + HGI48_RS03690 0.85 -0.3
785,199 + -0.0
785,199 + -0.4
785,199 + -0.4
785,199 + -0.9
785,199 + +0.6
785,199 + -1.4
785,200 - +0.3
785,200 - -1.0
785,200 - -1.0
785,200 - -0.7
785,200 - -1.7
785,216 - +0.0
785,216 - +1.3
785,218 + +0.3
785,218 + +2.0
785,218 + -0.9
785,219 - +0.5
785,219 - -1.7
785,219 - +0.3
785,219 - +0.3
785,219 - -2.1
785,221 + -0.4
785,222 - -0.2
785,222 - +2.0
785,286 + -1.1
785,286 + -0.6
785,286 + -1.6
785,286 + +2.2
785,286 + -0.4
785,287 - -0.7
785,287 - +0.0
785,287 - -0.1
785,287 - -0.7
785,287 - -0.8
785,289 - +0.3

Or see this region's nucleotide sequence