Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS03515 and HGI48_RS03520 are separated by 9 nucleotides HGI48_RS03520 and HGI48_RS03525 are separated by 72 nucleotides
HGI48_RS03515: HGI48_RS03515 - NAD-dependent epimerase/dehydratase family protein, at 741,415 to 742,389
_RS03515
HGI48_RS03520: HGI48_RS03520 - sugar transferase, at 742,399 to 742,947
_RS03520
HGI48_RS03525: HGI48_RS03525 - ABC transporter substrate-binding protein, at 743,020 to 744,342
_RS03525
Position (kb) 742
743 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 741.408 kb on - strand at 741.425 kb on + strand at 741.425 kb on + strand at 741.426 kb on - strand at 741.429 kb on - strand at 741.486 kb on + strand at 741.486 kb on + strand at 741.486 kb on + strand at 741.486 kb on + strand at 741.486 kb on + strand at 741.487 kb on - strand at 741.487 kb on - strand at 741.487 kb on - strand at 741.487 kb on - strand at 741.487 kb on - strand at 741.487 kb on - strand at 741.487 kb on - strand at 741.488 kb on + strand at 741.488 kb on + strand at 741.489 kb on - strand at 741.531 kb on + strand at 741.531 kb on + strand, within HGI48_RS03515 at 741.531 kb on + strand at 741.531 kb on + strand, within HGI48_RS03515 at 741.531 kb on + strand, within HGI48_RS03515 at 741.531 kb on + strand, within HGI48_RS03515 at 741.532 kb on - strand, within HGI48_RS03515 at 741.532 kb on - strand at 741.838 kb on + strand at 741.898 kb on - strand, within HGI48_RS03515 at 741.916 kb on + strand, within HGI48_RS03515 at 741.917 kb on - strand, within HGI48_RS03515 at 741.917 kb on - strand, within HGI48_RS03515 at 741.936 kb on + strand at 741.999 kb on + strand, within HGI48_RS03515 at 742.396 kb on - strand at 742.398 kb on + strand at 742.398 kb on + strand at 742.398 kb on + strand at 742.398 kb on + strand at 742.398 kb on + strand at 742.398 kb on + strand at 742.399 kb on - strand at 742.399 kb on - strand at 742.399 kb on - strand at 742.418 kb on + strand at 742.418 kb on + strand at 742.418 kb on + strand at 742.418 kb on + strand at 742.418 kb on + strand at 742.418 kb on + strand at 742.418 kb on + strand at 742.418 kb on + strand at 742.418 kb on + strand at 742.418 kb on + strand at 742.418 kb on + strand at 742.418 kb on + strand at 742.418 kb on + strand at 742.419 kb on - strand at 742.419 kb on - strand at 742.419 kb on - strand at 742.419 kb on - strand at 742.419 kb on - strand at 742.419 kb on - strand at 742.419 kb on - strand at 742.419 kb on - strand at 742.419 kb on - strand at 742.419 kb on - strand at 742.419 kb on - strand at 742.419 kb on - strand at 742.419 kb on - strand at 742.421 kb on + strand at 742.422 kb on - strand at 742.422 kb on - strand at 742.422 kb on - strand at 742.471 kb on + strand, within HGI48_RS03520 at 742.471 kb on + strand, within HGI48_RS03520 at 742.472 kb on - strand, within HGI48_RS03520 at 742.472 kb on - strand, within HGI48_RS03520 at 742.472 kb on - strand, within HGI48_RS03520 at 742.472 kb on - strand, within HGI48_RS03520 at 742.472 kb on - strand, within HGI48_RS03520 at 742.472 kb on - strand at 742.472 kb on - strand, within HGI48_RS03520 at 742.510 kb on - strand, within HGI48_RS03520 at 742.545 kb on + strand at 742.545 kb on + strand at 742.545 kb on + strand, within HGI48_RS03520 at 742.629 kb on - strand, within HGI48_RS03520 at 742.644 kb on + strand, within HGI48_RS03520 at 742.677 kb on + strand, within HGI48_RS03520 at 742.677 kb on + strand, within HGI48_RS03520 at 742.678 kb on - strand at 742.678 kb on - strand, within HGI48_RS03520 at 742.769 kb on + strand, within HGI48_RS03520 at 742.769 kb on + strand, within HGI48_RS03520 at 742.769 kb on + strand at 742.770 kb on - strand, within HGI48_RS03520 at 742.770 kb on - strand at 742.770 kb on - strand at 742.827 kb on + strand at 742.827 kb on + strand, within HGI48_RS03520 at 742.828 kb on - strand, within HGI48_RS03520 at 742.888 kb on + strand, within HGI48_RS03520 at 742.888 kb on + strand, within HGI48_RS03520 at 742.888 kb on + strand, within HGI48_RS03520 at 742.888 kb on + strand at 742.888 kb on + strand, within HGI48_RS03520 at 742.889 kb on - strand, within HGI48_RS03520 at 742.889 kb on - strand, within HGI48_RS03520 at 742.889 kb on - strand, within HGI48_RS03520 at 742.889 kb on - strand, within HGI48_RS03520 at 742.889 kb on - strand, within HGI48_RS03520 at 742.889 kb on - strand at 742.889 kb on - strand, within HGI48_RS03520 at 742.897 kb on + strand at 742.897 kb on + strand at 742.897 kb on + strand at 742.898 kb on - strand at 742.898 kb on - strand at 742.898 kb on - strand at 742.898 kb on - strand at 742.898 kb on - strand at 743.021 kb on + strand at 743.021 kb on + strand at 743.021 kb on + strand at 743.022 kb on - strand at 743.054 kb on + strand at 743.128 kb on + strand at 743.128 kb on + strand at 743.129 kb on - strand at 743.180 kb on + strand, within HGI48_RS03525 at 743.180 kb on + strand, within HGI48_RS03525 at 743.181 kb on - strand, within HGI48_RS03525 at 743.181 kb on - strand, within HGI48_RS03525 at 743.181 kb on - strand, within HGI48_RS03525 at 743.181 kb on - strand, within HGI48_RS03525 at 743.189 kb on + strand, within HGI48_RS03525 at 743.189 kb on + strand, within HGI48_RS03525 at 743.204 kb on + strand, within HGI48_RS03525 at 743.205 kb on - strand, within HGI48_RS03525 at 743.205 kb on - strand at 743.252 kb on + strand, within HGI48_RS03525 at 743.253 kb on - strand, within HGI48_RS03525 at 743.253 kb on - strand, within HGI48_RS03525 at 743.276 kb on + strand, within HGI48_RS03525 at 743.276 kb on + strand, within HGI48_RS03525 at 743.276 kb on + strand at 743.276 kb on + strand, within HGI48_RS03525 at 743.276 kb on + strand, within HGI48_RS03525 at 743.277 kb on - strand, within HGI48_RS03525 at 743.277 kb on - strand, within HGI48_RS03525 at 743.277 kb on - strand at 743.277 kb on - strand, within HGI48_RS03525 at 743.277 kb on - strand, within HGI48_RS03525 at 743.277 kb on - strand, within HGI48_RS03525 at 743.349 kb on - strand at 743.363 kb on + strand, within HGI48_RS03525 at 743.496 kb on + strand, within HGI48_RS03525 at 743.496 kb on + strand, within HGI48_RS03525 at 743.496 kb on + strand, within HGI48_RS03525 at 743.606 kb on + strand, within HGI48_RS03525 at 743.657 kb on + strand at 743.657 kb on + strand, within HGI48_RS03525 at 743.658 kb on - strand, within HGI48_RS03525 at 743.658 kb on - strand, within HGI48_RS03525 at 743.658 kb on - strand, within HGI48_RS03525 at 743.658 kb on - strand, within HGI48_RS03525 at 743.660 kb on + strand, within HGI48_RS03525 at 743.660 kb on + strand at 743.660 kb on + strand, within HGI48_RS03525 at 743.661 kb on - strand, within HGI48_RS03525 at 743.661 kb on - strand at 743.661 kb on - strand, within HGI48_RS03525 at 743.661 kb on - strand, within HGI48_RS03525 at 743.690 kb on + strand, within HGI48_RS03525 at 743.690 kb on + strand, within HGI48_RS03525 at 743.690 kb on + strand at 743.690 kb on + strand, within HGI48_RS03525 at 743.691 kb on - strand, within HGI48_RS03525 at 743.691 kb on - strand, within HGI48_RS03525 at 743.738 kb on + strand, within HGI48_RS03525 at 743.738 kb on + strand, within HGI48_RS03525 at 743.876 kb on + strand, within HGI48_RS03525 at 743.876 kb on + strand, within HGI48_RS03525 at 743.876 kb on + strand, within HGI48_RS03525 at 743.876 kb on + strand, within HGI48_RS03525 at 743.877 kb on - strand, within HGI48_RS03525 at 743.877 kb on - strand, within HGI48_RS03525 at 743.877 kb on - strand, within HGI48_RS03525 at 743.879 kb on + strand, within HGI48_RS03525 at 743.915 kb on + strand, within HGI48_RS03525 at 743.915 kb on + strand, within HGI48_RS03525
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 741,408 - -0.1 741,425 + +1.2 741,425 + -1.9 741,426 - -0.2 741,429 - +2.0 741,486 + -2.1 741,486 + -2.3 741,486 + -0.6 741,486 + +0.6 741,486 + -1.2 741,487 - -0.9 741,487 - +0.1 741,487 - +0.3 741,487 - +1.5 741,487 - -2.2 741,487 - +0.6 741,487 - -0.4 741,488 + -1.4 741,488 + -0.9 741,489 - -0.6 741,531 + +2.1 741,531 + HGI48_RS03515 0.12 +0.5 741,531 + +1.1 741,531 + HGI48_RS03515 0.12 +0.4 741,531 + HGI48_RS03515 0.12 +1.0 741,531 + HGI48_RS03515 0.12 -0.2 741,532 - HGI48_RS03515 0.12 -0.7 741,532 - -0.4 741,838 + +2.2 741,898 - HGI48_RS03515 0.50 -0.5 741,916 + HGI48_RS03515 0.51 +1.2 741,917 - HGI48_RS03515 0.51 -0.0 741,917 - HGI48_RS03515 0.51 +1.3 741,936 + -0.9 741,999 + HGI48_RS03515 0.60 +0.3 742,396 - -1.7 742,398 + +0.1 742,398 + +0.6 742,398 + -2.7 742,398 + -0.6 742,398 + -0.4 742,398 + +0.1 742,399 - -1.4 742,399 - -1.2 742,399 - +1.6 742,418 + -0.4 742,418 + -0.9 742,418 + -0.9 742,418 + +1.6 742,418 + -0.9 742,418 + +1.8 742,418 + -1.4 742,418 + -1.2 742,418 + -1.2 742,418 + -1.4 742,418 + +0.6 742,418 + -0.6 742,418 + +1.6 742,419 - +1.1 742,419 - -0.4 742,419 - -0.9 742,419 - -0.9 742,419 - -0.9 742,419 - -1.7 742,419 - -4.2 742,419 - -1.4 742,419 - -1.9 742,419 - +0.3 742,419 - +0.6 742,419 - -2.2 742,419 - -1.4 742,421 + -0.1 742,422 - +0.6 742,422 - -2.7 742,422 - +0.6 742,471 + HGI48_RS03520 0.13 -1.4 742,471 + HGI48_RS03520 0.13 +0.2 742,472 - HGI48_RS03520 0.13 -1.5 742,472 - HGI48_RS03520 0.13 +0.8 742,472 - HGI48_RS03520 0.13 -1.9 742,472 - HGI48_RS03520 0.13 -1.4 742,472 - HGI48_RS03520 0.13 -1.7 742,472 - +0.1 742,472 - HGI48_RS03520 0.13 -0.4 742,510 - HGI48_RS03520 0.20 -0.7 742,545 + -0.4 742,545 + -0.4 742,545 + HGI48_RS03520 0.27 +1.8 742,629 - HGI48_RS03520 0.42 -1.4 742,644 + HGI48_RS03520 0.45 +0.1 742,677 + HGI48_RS03520 0.51 +0.4 742,677 + HGI48_RS03520 0.51 -1.4 742,678 - -0.9 742,678 - HGI48_RS03520 0.51 +0.3 742,769 + HGI48_RS03520 0.67 -1.7 742,769 + HGI48_RS03520 0.67 +0.2 742,769 + -0.9 742,770 - HGI48_RS03520 0.68 +1.2 742,770 - +0.6 742,770 - -0.9 742,827 + +0.6 742,827 + HGI48_RS03520 0.78 -1.4 742,828 - HGI48_RS03520 0.78 -1.9 742,888 + HGI48_RS03520 0.89 -0.9 742,888 + HGI48_RS03520 0.89 -1.2 742,888 + HGI48_RS03520 0.89 -0.4 742,888 + +0.6 742,888 + HGI48_RS03520 0.89 -0.4 742,889 - HGI48_RS03520 0.89 -0.6 742,889 - HGI48_RS03520 0.89 -1.2 742,889 - HGI48_RS03520 0.89 -2.2 742,889 - HGI48_RS03520 0.89 -2.5 742,889 - HGI48_RS03520 0.89 -3.3 742,889 - -0.9 742,889 - HGI48_RS03520 0.89 -0.9 742,897 + -2.4 742,897 + -1.9 742,897 + -0.7 742,898 - -0.3 742,898 - -0.4 742,898 - +1.4 742,898 - +0.4 742,898 - -1.4 743,021 + -0.2 743,021 + -1.5 743,021 + -1.3 743,022 - +0.1 743,054 + +1.9 743,128 + -1.7 743,128 + +0.7 743,129 - -0.4 743,180 + HGI48_RS03525 0.12 -0.4 743,180 + HGI48_RS03525 0.12 -2.9 743,181 - HGI48_RS03525 0.12 +0.2 743,181 - HGI48_RS03525 0.12 -1.4 743,181 - HGI48_RS03525 0.12 -1.2 743,181 - HGI48_RS03525 0.12 -0.6 743,189 + HGI48_RS03525 0.13 -0.9 743,189 + HGI48_RS03525 0.13 -0.9 743,204 + HGI48_RS03525 0.14 -1.7 743,205 - HGI48_RS03525 0.14 -0.2 743,205 - +1.6 743,252 + HGI48_RS03525 0.18 -0.0 743,253 - HGI48_RS03525 0.18 -0.4 743,253 - HGI48_RS03525 0.18 -0.2 743,276 + HGI48_RS03525 0.19 +0.2 743,276 + HGI48_RS03525 0.19 -0.0 743,276 + -0.4 743,276 + HGI48_RS03525 0.19 +0.5 743,276 + HGI48_RS03525 0.19 +0.6 743,277 - HGI48_RS03525 0.19 +0.5 743,277 - HGI48_RS03525 0.19 -1.2 743,277 - +0.6 743,277 - HGI48_RS03525 0.19 +0.1 743,277 - HGI48_RS03525 0.19 +0.2 743,277 - HGI48_RS03525 0.19 +1.8 743,349 - +2.0 743,363 + HGI48_RS03525 0.26 -0.9 743,496 + HGI48_RS03525 0.36 +0.2 743,496 + HGI48_RS03525 0.36 +0.6 743,496 + HGI48_RS03525 0.36 -1.9 743,606 + HGI48_RS03525 0.44 +0.3 743,657 + +0.1 743,657 + HGI48_RS03525 0.48 -1.7 743,658 - HGI48_RS03525 0.48 -1.7 743,658 - HGI48_RS03525 0.48 -0.2 743,658 - HGI48_RS03525 0.48 -0.4 743,658 - HGI48_RS03525 0.48 -1.2 743,660 + HGI48_RS03525 0.48 -0.4 743,660 + +0.6 743,660 + HGI48_RS03525 0.48 -1.1 743,661 - HGI48_RS03525 0.48 +0.1 743,661 - +0.1 743,661 - HGI48_RS03525 0.48 +0.1 743,661 - HGI48_RS03525 0.48 -1.9 743,690 + HGI48_RS03525 0.51 +1.0 743,690 + HGI48_RS03525 0.51 -0.0 743,690 + +0.1 743,690 + HGI48_RS03525 0.51 -2.2 743,691 - HGI48_RS03525 0.51 -1.2 743,691 - HGI48_RS03525 0.51 -1.9 743,738 + HGI48_RS03525 0.54 +0.2 743,738 + HGI48_RS03525 0.54 -0.1 743,876 + HGI48_RS03525 0.65 -1.5 743,876 + HGI48_RS03525 0.65 -0.4 743,876 + HGI48_RS03525 0.65 -2.3 743,876 + HGI48_RS03525 0.65 +2.9 743,877 - HGI48_RS03525 0.65 -1.4 743,877 - HGI48_RS03525 0.65 -0.1 743,877 - HGI48_RS03525 0.65 +0.1 743,879 + HGI48_RS03525 0.65 +0.6 743,915 + HGI48_RS03525 0.68 -1.8 743,915 + HGI48_RS03525 0.68 -0.7
Or see this region's nucleotide sequence