Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS03480 and HGI48_RS03485 overlap by 8 nucleotides HGI48_RS03485 and HGI48_RS03490 are separated by 189 nucleotides
HGI48_RS03480: HGI48_RS03480 - Cu(+)/Ag(+) sensor histidine kinase, at 730,443 to 731,906
_RS03480
HGI48_RS03485: HGI48_RS03485 - heavy metal response regulator transcription factor, at 731,899 to 732,579
_RS03485
HGI48_RS03490: HGI48_RS03490 - Cu(+)/Ag(+) efflux RND transporter outer membrane channel SilC, at 732,769 to 734,154
_RS03490
Position (kb) 731
732
733 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 730.925 kb on + strand at 730.925 kb on + strand, within HGI48_RS03480 at 730.981 kb on + strand, within HGI48_RS03480 at 730.981 kb on + strand, within HGI48_RS03480 at 730.999 kb on + strand, within HGI48_RS03480 at 730.999 kb on + strand, within HGI48_RS03480 at 730.999 kb on + strand, within HGI48_RS03480 at 730.999 kb on + strand, within HGI48_RS03480 at 730.999 kb on + strand, within HGI48_RS03480 at 731.187 kb on + strand at 731.187 kb on + strand, within HGI48_RS03480 at 731.188 kb on - strand, within HGI48_RS03480 at 731.190 kb on - strand, within HGI48_RS03480 at 731.190 kb on - strand, within HGI48_RS03480 at 731.261 kb on + strand, within HGI48_RS03480 at 731.312 kb on + strand, within HGI48_RS03480 at 731.312 kb on + strand, within HGI48_RS03480 at 731.368 kb on + strand, within HGI48_RS03480 at 731.369 kb on - strand, within HGI48_RS03480 at 731.410 kb on + strand, within HGI48_RS03480 at 731.410 kb on + strand, within HGI48_RS03480 at 731.410 kb on + strand, within HGI48_RS03480 at 731.410 kb on + strand, within HGI48_RS03480 at 731.410 kb on + strand, within HGI48_RS03480 at 731.410 kb on + strand, within HGI48_RS03480 at 731.411 kb on - strand, within HGI48_RS03480 at 731.411 kb on - strand, within HGI48_RS03480 at 731.411 kb on - strand, within HGI48_RS03480 at 731.411 kb on - strand, within HGI48_RS03480 at 731.411 kb on - strand, within HGI48_RS03480 at 731.411 kb on - strand, within HGI48_RS03480 at 731.411 kb on - strand, within HGI48_RS03480 at 731.458 kb on - strand, within HGI48_RS03480 at 731.458 kb on - strand, within HGI48_RS03480 at 731.464 kb on + strand at 731.464 kb on + strand, within HGI48_RS03480 at 731.464 kb on + strand, within HGI48_RS03480 at 731.587 kb on - strand, within HGI48_RS03480 at 731.725 kb on - strand, within HGI48_RS03480 at 731.744 kb on + strand, within HGI48_RS03480 at 731.804 kb on + strand at 731.805 kb on - strand at 731.805 kb on - strand at 731.822 kb on + strand at 731.823 kb on - strand at 731.832 kb on + strand at 731.920 kb on + strand at 731.920 kb on + strand at 731.920 kb on + strand at 731.920 kb on + strand at 731.920 kb on + strand at 731.920 kb on + strand at 731.920 kb on + strand at 731.921 kb on - strand at 731.921 kb on - strand at 731.921 kb on - strand at 731.963 kb on + strand at 731.974 kb on + strand at 731.974 kb on + strand, within HGI48_RS03485 at 731.974 kb on + strand, within HGI48_RS03485 at 731.975 kb on - strand, within HGI48_RS03485 at 731.975 kb on - strand, within HGI48_RS03485 at 731.975 kb on - strand, within HGI48_RS03485 at 732.055 kb on + strand, within HGI48_RS03485 at 732.055 kb on + strand, within HGI48_RS03485 at 732.056 kb on - strand, within HGI48_RS03485 at 732.056 kb on - strand, within HGI48_RS03485 at 732.195 kb on + strand, within HGI48_RS03485 at 732.196 kb on - strand, within HGI48_RS03485 at 732.211 kb on + strand, within HGI48_RS03485 at 732.287 kb on + strand, within HGI48_RS03485 at 732.288 kb on - strand, within HGI48_RS03485 at 732.288 kb on - strand, within HGI48_RS03485 at 732.333 kb on + strand, within HGI48_RS03485 at 732.350 kb on - strand, within HGI48_RS03485 at 732.350 kb on - strand, within HGI48_RS03485 at 732.350 kb on - strand, within HGI48_RS03485 at 732.352 kb on + strand, within HGI48_RS03485 at 732.352 kb on + strand, within HGI48_RS03485 at 732.353 kb on - strand, within HGI48_RS03485 at 732.378 kb on + strand, within HGI48_RS03485 at 732.391 kb on + strand, within HGI48_RS03485 at 732.391 kb on + strand, within HGI48_RS03485 at 732.391 kb on + strand, within HGI48_RS03485 at 732.392 kb on - strand, within HGI48_RS03485 at 732.392 kb on - strand, within HGI48_RS03485 at 732.392 kb on - strand, within HGI48_RS03485 at 732.393 kb on + strand, within HGI48_RS03485 at 732.393 kb on + strand at 732.393 kb on + strand, within HGI48_RS03485 at 732.394 kb on - strand, within HGI48_RS03485 at 732.394 kb on - strand, within HGI48_RS03485 at 732.394 kb on - strand, within HGI48_RS03485 at 732.394 kb on - strand, within HGI48_RS03485 at 732.396 kb on + strand, within HGI48_RS03485 at 732.397 kb on - strand, within HGI48_RS03485 at 732.397 kb on - strand, within HGI48_RS03485 at 732.446 kb on + strand at 732.447 kb on - strand at 732.536 kb on + strand at 732.537 kb on - strand at 732.571 kb on + strand at 732.583 kb on - strand at 732.583 kb on - strand at 732.611 kb on + strand at 732.611 kb on + strand at 732.612 kb on - strand at 732.620 kb on + strand at 732.620 kb on + strand at 732.620 kb on + strand at 732.621 kb on - strand at 732.640 kb on + strand at 732.640 kb on + strand at 732.640 kb on + strand at 732.705 kb on - strand at 732.728 kb on + strand at 732.729 kb on - strand at 732.742 kb on - strand at 732.742 kb on - strand at 732.779 kb on + strand at 732.780 kb on - strand at 732.785 kb on + strand at 732.785 kb on + strand at 732.786 kb on - strand at 732.786 kb on - strand at 732.786 kb on - strand at 732.789 kb on + strand at 732.789 kb on + strand at 732.789 kb on + strand at 732.789 kb on + strand at 732.790 kb on - strand at 732.790 kb on - strand at 732.842 kb on - strand at 732.912 kb on + strand, within HGI48_RS03490 at 732.912 kb on + strand, within HGI48_RS03490 at 732.912 kb on + strand, within HGI48_RS03490 at 732.912 kb on + strand, within HGI48_RS03490 at 732.912 kb on + strand, within HGI48_RS03490 at 732.912 kb on + strand, within HGI48_RS03490 at 732.913 kb on - strand at 732.913 kb on - strand, within HGI48_RS03490 at 732.916 kb on + strand, within HGI48_RS03490 at 732.917 kb on - strand, within HGI48_RS03490 at 732.987 kb on + strand, within HGI48_RS03490 at 732.988 kb on - strand, within HGI48_RS03490 at 732.991 kb on - strand, within HGI48_RS03490 at 733.050 kb on + strand, within HGI48_RS03490 at 733.050 kb on + strand, within HGI48_RS03490 at 733.092 kb on + strand, within HGI48_RS03490 at 733.099 kb on + strand, within HGI48_RS03490 at 733.099 kb on + strand, within HGI48_RS03490 at 733.100 kb on - strand at 733.141 kb on + strand, within HGI48_RS03490 at 733.165 kb on + strand, within HGI48_RS03490 at 733.165 kb on + strand, within HGI48_RS03490 at 733.166 kb on - strand, within HGI48_RS03490 at 733.166 kb on - strand, within HGI48_RS03490 at 733.197 kb on + strand, within HGI48_RS03490 at 733.198 kb on - strand, within HGI48_RS03490 at 733.222 kb on + strand, within HGI48_RS03490 at 733.288 kb on + strand, within HGI48_RS03490 at 733.288 kb on + strand, within HGI48_RS03490 at 733.360 kb on + strand, within HGI48_RS03490 at 733.361 kb on - strand, within HGI48_RS03490 at 733.396 kb on - strand at 733.433 kb on + strand, within HGI48_RS03490 at 733.433 kb on + strand, within HGI48_RS03490 at 733.434 kb on - strand, within HGI48_RS03490 at 733.434 kb on - strand, within HGI48_RS03490 at 733.434 kb on - strand, within HGI48_RS03490 at 733.440 kb on + strand, within HGI48_RS03490 at 733.455 kb on - strand, within HGI48_RS03490 at 733.488 kb on + strand at 733.489 kb on - strand, within HGI48_RS03490 at 733.516 kb on + strand, within HGI48_RS03490 at 733.516 kb on + strand, within HGI48_RS03490 at 733.516 kb on + strand, within HGI48_RS03490 at 733.516 kb on + strand, within HGI48_RS03490
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 730,925 + -0.9 730,925 + HGI48_RS03480 0.33 +0.2 730,981 + HGI48_RS03480 0.37 +0.1 730,981 + HGI48_RS03480 0.37 +1.6 730,999 + HGI48_RS03480 0.38 -2.1 730,999 + HGI48_RS03480 0.38 -0.0 730,999 + HGI48_RS03480 0.38 -0.4 730,999 + HGI48_RS03480 0.38 -1.3 730,999 + HGI48_RS03480 0.38 -1.4 731,187 + +1.1 731,187 + HGI48_RS03480 0.51 -1.7 731,188 - HGI48_RS03480 0.51 -1.5 731,190 - HGI48_RS03480 0.51 -0.3 731,190 - HGI48_RS03480 0.51 +0.3 731,261 + HGI48_RS03480 0.56 -0.0 731,312 + HGI48_RS03480 0.59 +0.4 731,312 + HGI48_RS03480 0.59 -0.9 731,368 + HGI48_RS03480 0.63 -0.6 731,369 - HGI48_RS03480 0.63 -0.1 731,410 + HGI48_RS03480 0.66 -1.4 731,410 + HGI48_RS03480 0.66 -0.2 731,410 + HGI48_RS03480 0.66 -0.5 731,410 + HGI48_RS03480 0.66 -0.6 731,410 + HGI48_RS03480 0.66 -1.4 731,410 + HGI48_RS03480 0.66 -1.7 731,411 - HGI48_RS03480 0.66 +0.6 731,411 - HGI48_RS03480 0.66 -0.6 731,411 - HGI48_RS03480 0.66 -2.7 731,411 - HGI48_RS03480 0.66 -0.1 731,411 - HGI48_RS03480 0.66 +0.3 731,411 - HGI48_RS03480 0.66 -1.4 731,411 - HGI48_RS03480 0.66 +0.0 731,458 - HGI48_RS03480 0.69 -0.4 731,458 - HGI48_RS03480 0.69 -0.6 731,464 + +3.5 731,464 + HGI48_RS03480 0.70 -0.4 731,464 + HGI48_RS03480 0.70 +0.4 731,587 - HGI48_RS03480 0.78 +0.1 731,725 - HGI48_RS03480 0.88 +1.1 731,744 + HGI48_RS03480 0.89 -1.9 731,804 + +0.3 731,805 - -0.0 731,805 - +0.5 731,822 + +1.0 731,823 - +0.6 731,832 + -2.2 731,920 + +0.2 731,920 + -2.5 731,920 + +1.1 731,920 + -0.9 731,920 + -0.6 731,920 + +0.2 731,920 + +0.6 731,921 - -0.2 731,921 - +0.3 731,921 - +0.6 731,963 + -0.1 731,974 + -0.4 731,974 + HGI48_RS03485 0.11 -0.4 731,974 + HGI48_RS03485 0.11 -0.0 731,975 - HGI48_RS03485 0.11 -0.7 731,975 - HGI48_RS03485 0.11 -0.4 731,975 - HGI48_RS03485 0.11 +1.4 732,055 + HGI48_RS03485 0.23 +0.3 732,055 + HGI48_RS03485 0.23 +0.8 732,056 - HGI48_RS03485 0.23 -1.7 732,056 - HGI48_RS03485 0.23 -0.8 732,195 + HGI48_RS03485 0.43 -0.1 732,196 - HGI48_RS03485 0.44 -1.8 732,211 + HGI48_RS03485 0.46 -1.4 732,287 + HGI48_RS03485 0.57 -0.8 732,288 - HGI48_RS03485 0.57 -0.3 732,288 - HGI48_RS03485 0.57 +0.5 732,333 + HGI48_RS03485 0.64 -1.4 732,350 - HGI48_RS03485 0.66 -0.2 732,350 - HGI48_RS03485 0.66 -0.6 732,350 - HGI48_RS03485 0.66 -1.7 732,352 + HGI48_RS03485 0.67 +0.6 732,352 + HGI48_RS03485 0.67 +0.6 732,353 - HGI48_RS03485 0.67 +0.6 732,378 + HGI48_RS03485 0.70 -1.8 732,391 + HGI48_RS03485 0.72 -0.7 732,391 + HGI48_RS03485 0.72 +0.6 732,391 + HGI48_RS03485 0.72 -0.6 732,392 - HGI48_RS03485 0.72 +0.4 732,392 - HGI48_RS03485 0.72 -1.0 732,392 - HGI48_RS03485 0.72 -0.4 732,393 + HGI48_RS03485 0.73 -2.4 732,393 + +1.6 732,393 + HGI48_RS03485 0.73 -2.8 732,394 - HGI48_RS03485 0.73 +1.1 732,394 - HGI48_RS03485 0.73 -0.8 732,394 - HGI48_RS03485 0.73 -0.0 732,394 - HGI48_RS03485 0.73 -2.2 732,396 + HGI48_RS03485 0.73 -0.7 732,397 - HGI48_RS03485 0.73 -2.5 732,397 - HGI48_RS03485 0.73 -0.8 732,446 + +0.1 732,447 - +1.1 732,536 + +0.6 732,537 - +0.4 732,571 + +0.4 732,583 - +1.9 732,583 - -0.4 732,611 + +0.4 732,611 + -0.4 732,612 - -0.4 732,620 + -0.7 732,620 + -0.3 732,620 + +0.6 732,621 - +0.4 732,640 + -0.5 732,640 + -0.6 732,640 + +0.5 732,705 - -1.5 732,728 + +1.2 732,729 - +0.6 732,742 - -2.2 732,742 - -0.8 732,779 + +0.3 732,780 - -0.9 732,785 + -2.5 732,785 + +1.3 732,786 - -0.4 732,786 - +0.4 732,786 - -1.9 732,789 + -2.5 732,789 + -0.2 732,789 + +0.3 732,789 + +0.1 732,790 - +0.6 732,790 - +0.1 732,842 - +0.6 732,912 + HGI48_RS03490 0.10 -0.2 732,912 + HGI48_RS03490 0.10 -1.1 732,912 + HGI48_RS03490 0.10 +2.4 732,912 + HGI48_RS03490 0.10 -0.4 732,912 + HGI48_RS03490 0.10 -0.5 732,912 + HGI48_RS03490 0.10 -0.7 732,913 - +1.4 732,913 - HGI48_RS03490 0.10 -0.4 732,916 + HGI48_RS03490 0.11 +0.3 732,917 - HGI48_RS03490 0.11 -0.3 732,987 + HGI48_RS03490 0.16 -0.4 732,988 - HGI48_RS03490 0.16 -0.6 732,991 - HGI48_RS03490 0.16 +1.0 733,050 + HGI48_RS03490 0.20 -0.7 733,050 + HGI48_RS03490 0.20 -1.9 733,092 + HGI48_RS03490 0.23 -2.7 733,099 + HGI48_RS03490 0.24 -1.7 733,099 + HGI48_RS03490 0.24 -0.1 733,100 - +0.6 733,141 + HGI48_RS03490 0.27 -0.4 733,165 + HGI48_RS03490 0.29 -0.4 733,165 + HGI48_RS03490 0.29 -0.3 733,166 - HGI48_RS03490 0.29 +0.2 733,166 - HGI48_RS03490 0.29 -0.4 733,197 + HGI48_RS03490 0.31 -1.1 733,198 - HGI48_RS03490 0.31 -0.1 733,222 + HGI48_RS03490 0.33 +0.6 733,288 + HGI48_RS03490 0.37 -0.4 733,288 + HGI48_RS03490 0.37 -0.8 733,360 + HGI48_RS03490 0.43 +0.4 733,361 - HGI48_RS03490 0.43 -0.9 733,396 - -0.9 733,433 + HGI48_RS03490 0.48 +1.3 733,433 + HGI48_RS03490 0.48 +0.8 733,434 - HGI48_RS03490 0.48 +1.0 733,434 - HGI48_RS03490 0.48 -1.7 733,434 - HGI48_RS03490 0.48 -0.4 733,440 + HGI48_RS03490 0.48 -2.7 733,455 - HGI48_RS03490 0.49 -0.4 733,488 + +0.6 733,489 - HGI48_RS03490 0.52 -0.2 733,516 + HGI48_RS03490 0.54 +0.6 733,516 + HGI48_RS03490 0.54 +1.1 733,516 + HGI48_RS03490 0.54 -0.4 733,516 + HGI48_RS03490 0.54 -3.4
Or see this region's nucleotide sequence