Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS03265

Experiment: PDB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS03260 and HGI48_RS03265 are separated by 127 nucleotidesHGI48_RS03265 and HGI48_RS03270 are separated by 108 nucleotidesHGI48_RS03270 and HGI48_RS03275 are separated by 12 nucleotides HGI48_RS03260: HGI48_RS03260 - polyribonucleotide nucleotidyltransferase, at 687,965 to 690,085 _RS03260 HGI48_RS03265: HGI48_RS03265 - lipoprotein NlpI, at 690,213 to 691,097 _RS03265 HGI48_RS03270: HGI48_RS03270 - protein YrbN, at 691,206 to 691,265 _RS03270 HGI48_RS03275: HGI48_RS03275 - DEAD/DEAH family ATP-dependent RNA helicase, at 691,278 to 693,164 _RS03275 Position (kb) 690 691 692Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 689.232 kb on - strand, within HGI48_RS03260at 689.281 kb on + strand, within HGI48_RS03260at 689.282 kb on - strand, within HGI48_RS03260at 689.282 kb on - strand, within HGI48_RS03260at 689.371 kb on - strand, within HGI48_RS03260at 689.387 kb on + strand, within HGI48_RS03260at 689.387 kb on + strand, within HGI48_RS03260at 689.387 kb on + strand, within HGI48_RS03260at 689.387 kb on + strand, within HGI48_RS03260at 689.387 kb on + strand, within HGI48_RS03260at 689.388 kb on - strand, within HGI48_RS03260at 689.388 kb on - strand, within HGI48_RS03260at 689.388 kb on - strandat 689.388 kb on - strand, within HGI48_RS03260at 689.590 kb on + strand, within HGI48_RS03260at 689.591 kb on - strand, within HGI48_RS03260at 689.743 kb on + strand, within HGI48_RS03260at 689.833 kb on + strand, within HGI48_RS03260at 689.833 kb on + strand, within HGI48_RS03260at 689.837 kb on + strand, within HGI48_RS03260at 689.837 kb on + strand, within HGI48_RS03260at 689.837 kb on + strand, within HGI48_RS03260at 689.837 kb on + strand, within HGI48_RS03260at 689.837 kb on + strand, within HGI48_RS03260at 689.838 kb on - strand, within HGI48_RS03260at 689.838 kb on - strandat 689.838 kb on - strand, within HGI48_RS03260at 689.845 kb on + strand, within HGI48_RS03260at 689.914 kb on + strandat 689.914 kb on + strandat 689.914 kb on + strandat 689.914 kb on + strandat 689.915 kb on - strandat 689.915 kb on - strandat 689.957 kb on + strandat 689.979 kb on + strandat 689.991 kb on + strandat 689.992 kb on - strandat 690.031 kb on - strandat 690.083 kb on + strandat 690.083 kb on + strandat 690.084 kb on - strandat 690.084 kb on - strandat 690.113 kb on - strandat 690.134 kb on + strandat 690.134 kb on + strandat 690.134 kb on + strandat 690.135 kb on - strandat 690.135 kb on - strandat 690.238 kb on - strandat 690.254 kb on + strandat 690.255 kb on - strandat 690.381 kb on - strand, within HGI48_RS03265at 690.403 kb on + strand, within HGI48_RS03265at 690.407 kb on - strand, within HGI48_RS03265at 690.407 kb on - strand, within HGI48_RS03265at 690.408 kb on + strand, within HGI48_RS03265at 690.513 kb on + strand, within HGI48_RS03265at 690.526 kb on - strand, within HGI48_RS03265at 690.526 kb on - strand, within HGI48_RS03265at 690.526 kb on - strand, within HGI48_RS03265at 690.581 kb on - strand, within HGI48_RS03265at 690.598 kb on - strand, within HGI48_RS03265at 690.604 kb on - strand, within HGI48_RS03265at 690.634 kb on - strand, within HGI48_RS03265at 690.866 kb on + strand, within HGI48_RS03265at 690.881 kb on + strand, within HGI48_RS03265at 690.928 kb on - strandat 690.932 kb on - strand, within HGI48_RS03265at 690.932 kb on - strand, within HGI48_RS03265at 690.936 kb on - strand, within HGI48_RS03265at 690.943 kb on - strand, within HGI48_RS03265at 690.943 kb on - strand, within HGI48_RS03265at 690.946 kb on + strandat 690.946 kb on + strandat 690.946 kb on + strand, within HGI48_RS03265at 691.150 kb on - strandat 691.222 kb on - strand, within HGI48_RS03270at 691.238 kb on - strand, within HGI48_RS03270at 691.241 kb on + strand, within HGI48_RS03270at 691.276 kb on - strandat 691.577 kb on + strand, within HGI48_RS03275at 691.577 kb on + strand, within HGI48_RS03275at 691.628 kb on - strand, within HGI48_RS03275at 691.960 kb on - strand, within HGI48_RS03275

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Per-strain Table

Position Strand Gene LocusTag Fraction PDB
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689,232 - HGI48_RS03260 0.60 -0.4
689,281 + HGI48_RS03260 0.62 +1.1
689,282 - HGI48_RS03260 0.62 -0.8
689,282 - HGI48_RS03260 0.62 -1.9
689,371 - HGI48_RS03260 0.66 -2.4
689,387 + HGI48_RS03260 0.67 -0.9
689,387 + HGI48_RS03260 0.67 +1.8
689,387 + HGI48_RS03260 0.67 +0.4
689,387 + HGI48_RS03260 0.67 +1.4
689,387 + HGI48_RS03260 0.67 -0.4
689,388 - HGI48_RS03260 0.67 -0.4
689,388 - HGI48_RS03260 0.67 -1.7
689,388 - -0.9
689,388 - HGI48_RS03260 0.67 -1.2
689,590 + HGI48_RS03260 0.77 +1.4
689,591 - HGI48_RS03260 0.77 -0.7
689,743 + HGI48_RS03260 0.84 +0.4
689,833 + HGI48_RS03260 0.88 -2.2
689,833 + HGI48_RS03260 0.88 -1.7
689,837 + HGI48_RS03260 0.88 -1.9
689,837 + HGI48_RS03260 0.88 -2.9
689,837 + HGI48_RS03260 0.88 +1.3
689,837 + HGI48_RS03260 0.88 -2.3
689,837 + HGI48_RS03260 0.88 -0.1
689,838 - HGI48_RS03260 0.88 -0.1
689,838 - +0.6
689,838 - HGI48_RS03260 0.88 -0.5
689,845 + HGI48_RS03260 0.89 +0.6
689,914 + -2.9
689,914 + -0.9
689,914 + +1.6
689,914 + +0.8
689,915 - -2.2
689,915 - +0.6
689,957 + -1.8
689,979 + -1.4
689,991 + +0.1
689,992 - -0.9
690,031 - -2.7
690,083 + +0.1
690,083 + -0.9
690,084 - +1.6
690,084 - +1.2
690,113 - -0.9
690,134 + +0.6
690,134 + +0.3
690,134 + -0.3
690,135 - -2.4
690,135 - -1.4
690,238 - -0.9
690,254 + -0.2
690,255 - -2.2
690,381 - HGI48_RS03265 0.19 -1.7
690,403 + HGI48_RS03265 0.21 -2.9
690,407 - HGI48_RS03265 0.22 -1.9
690,407 - HGI48_RS03265 0.22 -3.9
690,408 + HGI48_RS03265 0.22 -0.8
690,513 + HGI48_RS03265 0.34 -0.6
690,526 - HGI48_RS03265 0.35 -2.8
690,526 - HGI48_RS03265 0.35 -0.4
690,526 - HGI48_RS03265 0.35 -0.0
690,581 - HGI48_RS03265 0.42 -1.8
690,598 - HGI48_RS03265 0.44 -1.1
690,604 - HGI48_RS03265 0.44 -2.4
690,634 - HGI48_RS03265 0.48 -1.9
690,866 + HGI48_RS03265 0.74 -4.4
690,881 + HGI48_RS03265 0.75 +0.9
690,928 - +1.2
690,932 - HGI48_RS03265 0.81 -0.6
690,932 - HGI48_RS03265 0.81 -1.2
690,936 - HGI48_RS03265 0.82 -2.2
690,943 - HGI48_RS03265 0.82 -1.7
690,943 - HGI48_RS03265 0.82 -1.7
690,946 + +0.6
690,946 + +1.4
690,946 + HGI48_RS03265 0.83 -2.5
691,150 - -1.8
691,222 - HGI48_RS03270 0.27 -1.9
691,238 - HGI48_RS03270 0.53 +1.7
691,241 + HGI48_RS03270 0.58 -2.9
691,276 - +0.2
691,577 + HGI48_RS03275 0.16 -0.4
691,577 + HGI48_RS03275 0.16 +0.8
691,628 - HGI48_RS03275 0.19 -1.7
691,960 - HGI48_RS03275 0.36 -0.4

Or see this region's nucleotide sequence