Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS02785 and HGI48_RS02790 are separated by 678 nucleotides HGI48_RS02790 and HGI48_RS02795 are separated by 236 nucleotides
HGI48_RS02785: HGI48_RS02785 - DedA family protein, at 598,187 to 598,861
_RS02785
HGI48_RS02790: HGI48_RS02790 - transcriptional regulator ExuR, at 599,540 to 600,319
_RS02790
HGI48_RS02795: HGI48_RS02795 - MFS transporter, at 600,556 to 601,857
_RS02795
Position (kb) 599
600
601 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 598.576 kb on + strand, within HGI48_RS02785 at 598.602 kb on + strand, within HGI48_RS02785 at 598.602 kb on + strand, within HGI48_RS02785 at 598.603 kb on - strand at 598.603 kb on - strand, within HGI48_RS02785 at 598.607 kb on - strand at 598.849 kb on + strand at 598.850 kb on - strand at 598.853 kb on + strand at 598.853 kb on + strand at 598.853 kb on + strand at 598.854 kb on - strand at 598.854 kb on - strand at 598.854 kb on - strand at 598.854 kb on - strand at 598.856 kb on - strand at 598.874 kb on + strand at 599.001 kb on - strand at 599.001 kb on - strand at 599.001 kb on - strand at 599.036 kb on + strand at 599.036 kb on + strand at 599.036 kb on + strand at 599.036 kb on + strand at 599.036 kb on + strand at 599.036 kb on + strand at 599.036 kb on + strand at 599.036 kb on + strand at 599.037 kb on - strand at 599.037 kb on - strand at 599.037 kb on - strand at 599.037 kb on - strand at 599.037 kb on - strand at 599.037 kb on - strand at 599.037 kb on - strand at 599.037 kb on - strand at 599.037 kb on - strand at 599.037 kb on - strand at 599.037 kb on - strand at 599.037 kb on - strand at 599.037 kb on - strand at 599.037 kb on - strand at 599.039 kb on - strand at 599.039 kb on - strand at 599.039 kb on - strand at 599.039 kb on - strand at 599.039 kb on - strand at 599.039 kb on - strand at 599.039 kb on - strand at 599.039 kb on - strand at 599.058 kb on + strand at 599.059 kb on - strand at 599.060 kb on + strand at 599.061 kb on - strand at 599.061 kb on - strand at 599.061 kb on - strand at 599.061 kb on - strand at 599.061 kb on - strand at 599.061 kb on - strand at 599.061 kb on - strand at 599.129 kb on + strand at 599.130 kb on - strand at 599.130 kb on - strand at 599.130 kb on - strand at 599.130 kb on - strand at 599.193 kb on + strand at 599.194 kb on - strand at 599.194 kb on - strand at 599.194 kb on - strand at 599.196 kb on - strand at 599.196 kb on - strand at 599.307 kb on + strand at 599.330 kb on + strand at 599.340 kb on + strand at 599.354 kb on + strand at 599.355 kb on - strand at 599.392 kb on - strand at 599.457 kb on - strand at 599.599 kb on - strand at 599.771 kb on - strand, within HGI48_RS02790 at 599.873 kb on + strand, within HGI48_RS02790 at 599.873 kb on + strand, within HGI48_RS02790 at 599.873 kb on + strand, within HGI48_RS02790 at 599.873 kb on + strand, within HGI48_RS02790 at 599.874 kb on - strand, within HGI48_RS02790 at 599.874 kb on - strand, within HGI48_RS02790 at 599.874 kb on - strand, within HGI48_RS02790 at 600.005 kb on + strand, within HGI48_RS02790 at 600.332 kb on + strand at 600.333 kb on - strand at 600.333 kb on - strand at 600.333 kb on - strand at 600.337 kb on + strand at 600.337 kb on + strand at 600.402 kb on + strand at 600.403 kb on - strand at 600.471 kb on + strand at 600.471 kb on + strand at 600.471 kb on + strand at 600.472 kb on - strand at 600.472 kb on - strand at 600.516 kb on - strand at 600.516 kb on - strand at 600.625 kb on + strand at 600.670 kb on + strand at 600.881 kb on + strand at 600.882 kb on - strand, within HGI48_RS02795 at 600.882 kb on - strand, within HGI48_RS02795 at 600.917 kb on - strand, within HGI48_RS02795 at 600.962 kb on - strand, within HGI48_RS02795 at 600.980 kb on + strand, within HGI48_RS02795 at 600.980 kb on + strand, within HGI48_RS02795 at 600.981 kb on - strand, within HGI48_RS02795 at 600.981 kb on - strand, within HGI48_RS02795 at 601.004 kb on + strand, within HGI48_RS02795 at 601.004 kb on + strand, within HGI48_RS02795 at 601.005 kb on - strand, within HGI48_RS02795 at 601.005 kb on - strand, within HGI48_RS02795 at 601.005 kb on - strand, within HGI48_RS02795 at 601.086 kb on - strand, within HGI48_RS02795 at 601.086 kb on - strand, within HGI48_RS02795 at 601.256 kb on + strand, within HGI48_RS02795 at 601.256 kb on + strand, within HGI48_RS02795 at 601.256 kb on + strand, within HGI48_RS02795 at 601.304 kb on + strand, within HGI48_RS02795 at 601.305 kb on - strand, within HGI48_RS02795 at 601.305 kb on - strand, within HGI48_RS02795 at 601.310 kb on + strand, within HGI48_RS02795 at 601.311 kb on - strand, within HGI48_RS02795 at 601.311 kb on - strand, within HGI48_RS02795
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 598,576 + HGI48_RS02785 0.58 +1.2 598,602 + HGI48_RS02785 0.61 +1.0 598,602 + HGI48_RS02785 0.61 -0.5 598,603 - -0.9 598,603 - HGI48_RS02785 0.62 +0.1 598,607 - +0.1 598,849 + +0.4 598,850 - +0.1 598,853 + +1.1 598,853 + -2.9 598,853 + -1.2 598,854 - -0.7 598,854 - -0.9 598,854 - +0.1 598,854 - -0.6 598,856 - -0.3 598,874 + +2.5 599,001 - -1.9 599,001 - +0.3 599,001 - -0.3 599,036 + -0.2 599,036 + +1.9 599,036 + +0.5 599,036 + -1.2 599,036 + +0.2 599,036 + -0.3 599,036 + -1.7 599,036 + +0.3 599,037 - +1.1 599,037 - +1.2 599,037 - +1.2 599,037 - -2.5 599,037 - +1.1 599,037 - +0.1 599,037 - +2.6 599,037 - +0.7 599,037 - -1.2 599,037 - -0.2 599,037 - -0.6 599,037 - -3.3 599,037 - -0.8 599,037 - -1.5 599,039 - +1.0 599,039 - -0.2 599,039 - -1.1 599,039 - -0.9 599,039 - +0.5 599,039 - +0.7 599,039 - -0.1 599,039 - -0.1 599,058 + +2.4 599,059 - -0.9 599,060 + +1.5 599,061 - +0.8 599,061 - +1.1 599,061 - -0.2 599,061 - +0.7 599,061 - -0.1 599,061 - +1.0 599,061 - +0.2 599,129 + +0.3 599,130 - +0.2 599,130 - +1.1 599,130 - -0.8 599,130 - +0.2 599,193 + +0.1 599,194 - +0.1 599,194 - +0.4 599,194 - -0.3 599,196 - +2.0 599,196 - +0.4 599,307 + -2.2 599,330 + +1.3 599,340 + -2.7 599,354 + +0.4 599,355 - +0.7 599,392 - -0.3 599,457 - -0.2 599,599 - -1.9 599,771 - HGI48_RS02790 0.30 -2.3 599,873 + HGI48_RS02790 0.43 -1.3 599,873 + HGI48_RS02790 0.43 -1.1 599,873 + HGI48_RS02790 0.43 -1.3 599,873 + HGI48_RS02790 0.43 -0.2 599,874 - HGI48_RS02790 0.43 -1.3 599,874 - HGI48_RS02790 0.43 +1.1 599,874 - HGI48_RS02790 0.43 -1.3 600,005 + HGI48_RS02790 0.60 -0.7 600,332 + -0.7 600,333 - +0.2 600,333 - +0.9 600,333 - +0.8 600,337 + -1.3 600,337 + +0.1 600,402 + -2.0 600,403 - -1.2 600,471 + -0.9 600,471 + -0.8 600,471 + +2.4 600,472 - -1.5 600,472 - -0.7 600,516 - +0.9 600,516 - -1.7 600,625 + -2.7 600,670 + -0.7 600,881 + -0.9 600,882 - HGI48_RS02795 0.25 +0.2 600,882 - HGI48_RS02795 0.25 +0.1 600,917 - HGI48_RS02795 0.28 +1.2 600,962 - HGI48_RS02795 0.31 -0.0 600,980 + HGI48_RS02795 0.33 -1.3 600,980 + HGI48_RS02795 0.33 -1.7 600,981 - HGI48_RS02795 0.33 -2.3 600,981 - HGI48_RS02795 0.33 +0.4 601,004 + HGI48_RS02795 0.34 -0.2 601,004 + HGI48_RS02795 0.34 +0.6 601,005 - HGI48_RS02795 0.34 -0.3 601,005 - HGI48_RS02795 0.34 +1.0 601,005 - HGI48_RS02795 0.34 -0.3 601,086 - HGI48_RS02795 0.41 +1.4 601,086 - HGI48_RS02795 0.41 +1.1 601,256 + HGI48_RS02795 0.54 -0.0 601,256 + HGI48_RS02795 0.54 -0.1 601,256 + HGI48_RS02795 0.54 +1.2 601,304 + HGI48_RS02795 0.57 -1.2 601,305 - HGI48_RS02795 0.58 +0.2 601,305 - HGI48_RS02795 0.58 -0.3 601,310 + HGI48_RS02795 0.58 -0.5 601,311 - HGI48_RS02795 0.58 +0.9 601,311 - HGI48_RS02795 0.58 -0.4
Or see this region's nucleotide sequence