Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS02620 and HGI48_RS02625 overlap by 8 nucleotides HGI48_RS02625 and HGI48_RS02630 are separated by 9 nucleotides
HGI48_RS02620: HGI48_RS02620 - capsular biosynthesis protein, at 568,395 to 569,777
_RS02620
HGI48_RS02625: HGI48_RS02625 - glycosyltransferase, at 569,770 to 570,759
_RS02625
HGI48_RS02630: HGI48_RS02630 - glycosyltransferase family 4 protein, at 570,769 to 571,980
_RS02630
Position (kb) 569
570
571 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 568.777 kb on - strand, within HGI48_RS02620 at 568.800 kb on + strand, within HGI48_RS02620 at 568.924 kb on + strand, within HGI48_RS02620 at 568.940 kb on + strand, within HGI48_RS02620 at 568.940 kb on + strand at 568.941 kb on - strand, within HGI48_RS02620 at 569.003 kb on + strand, within HGI48_RS02620 at 569.011 kb on + strand, within HGI48_RS02620 at 569.027 kb on + strand, within HGI48_RS02620 at 569.028 kb on - strand, within HGI48_RS02620 at 569.100 kb on + strand, within HGI48_RS02620 at 569.187 kb on - strand, within HGI48_RS02620 at 569.249 kb on - strand, within HGI48_RS02620 at 569.249 kb on - strand at 569.270 kb on + strand at 569.286 kb on + strand, within HGI48_RS02620 at 569.321 kb on + strand at 569.321 kb on + strand, within HGI48_RS02620 at 569.322 kb on - strand, within HGI48_RS02620 at 569.402 kb on + strand, within HGI48_RS02620 at 569.442 kb on + strand, within HGI48_RS02620 at 569.443 kb on - strand, within HGI48_RS02620 at 569.483 kb on - strand, within HGI48_RS02620 at 569.534 kb on + strand, within HGI48_RS02620 at 569.582 kb on - strand, within HGI48_RS02620 at 569.656 kb on + strand at 569.657 kb on - strand at 569.661 kb on + strand at 569.711 kb on - strand at 569.754 kb on + strand at 569.755 kb on - strand at 569.756 kb on + strand at 569.800 kb on - strand at 569.802 kb on + strand at 569.838 kb on + strand at 569.862 kb on + strand at 569.877 kb on + strand, within HGI48_RS02625 at 570.004 kb on + strand, within HGI48_RS02625 at 570.004 kb on + strand, within HGI48_RS02625 at 570.004 kb on + strand, within HGI48_RS02625 at 570.005 kb on - strand at 570.010 kb on + strand, within HGI48_RS02625 at 570.010 kb on + strand, within HGI48_RS02625 at 570.010 kb on + strand, within HGI48_RS02625 at 570.011 kb on - strand, within HGI48_RS02625 at 570.132 kb on - strand, within HGI48_RS02625 at 570.154 kb on + strand, within HGI48_RS02625 at 570.154 kb on + strand, within HGI48_RS02625 at 570.154 kb on + strand, within HGI48_RS02625 at 570.155 kb on - strand, within HGI48_RS02625 at 570.162 kb on + strand, within HGI48_RS02625 at 570.162 kb on + strand, within HGI48_RS02625 at 570.163 kb on - strand, within HGI48_RS02625 at 570.163 kb on - strand, within HGI48_RS02625 at 570.163 kb on - strand, within HGI48_RS02625 at 570.163 kb on - strand, within HGI48_RS02625 at 570.180 kb on + strand at 570.180 kb on + strand, within HGI48_RS02625 at 570.180 kb on + strand, within HGI48_RS02625 at 570.180 kb on + strand, within HGI48_RS02625 at 570.181 kb on - strand, within HGI48_RS02625 at 570.181 kb on - strand, within HGI48_RS02625 at 570.181 kb on - strand, within HGI48_RS02625 at 570.191 kb on + strand, within HGI48_RS02625 at 570.191 kb on + strand, within HGI48_RS02625 at 570.192 kb on - strand, within HGI48_RS02625 at 570.192 kb on - strand, within HGI48_RS02625 at 570.192 kb on - strand, within HGI48_RS02625 at 570.233 kb on + strand at 570.233 kb on + strand, within HGI48_RS02625 at 570.234 kb on - strand, within HGI48_RS02625 at 570.235 kb on + strand, within HGI48_RS02625 at 570.236 kb on - strand, within HGI48_RS02625 at 570.265 kb on + strand, within HGI48_RS02625 at 570.265 kb on + strand, within HGI48_RS02625 at 570.266 kb on - strand, within HGI48_RS02625 at 570.266 kb on - strand, within HGI48_RS02625 at 570.337 kb on - strand, within HGI48_RS02625 at 570.356 kb on + strand, within HGI48_RS02625 at 570.357 kb on - strand, within HGI48_RS02625 at 570.357 kb on - strand, within HGI48_RS02625 at 570.361 kb on + strand, within HGI48_RS02625 at 570.361 kb on + strand, within HGI48_RS02625 at 570.372 kb on + strand, within HGI48_RS02625 at 570.373 kb on - strand, within HGI48_RS02625 at 570.395 kb on - strand, within HGI48_RS02625 at 570.396 kb on + strand, within HGI48_RS02625 at 570.396 kb on + strand, within HGI48_RS02625 at 570.410 kb on - strand, within HGI48_RS02625 at 570.453 kb on - strand at 570.475 kb on + strand, within HGI48_RS02625 at 570.476 kb on - strand, within HGI48_RS02625 at 570.615 kb on - strand, within HGI48_RS02625 at 570.674 kb on + strand at 570.675 kb on - strand at 570.675 kb on - strand at 570.675 kb on - strand at 570.747 kb on + strand at 570.747 kb on + strand at 570.748 kb on - strand at 570.897 kb on + strand, within HGI48_RS02630 at 570.922 kb on + strand, within HGI48_RS02630 at 570.923 kb on - strand, within HGI48_RS02630 at 570.958 kb on - strand, within HGI48_RS02630 at 571.000 kb on - strand, within HGI48_RS02630 at 571.014 kb on + strand, within HGI48_RS02630 at 571.071 kb on + strand, within HGI48_RS02630 at 571.071 kb on + strand at 571.075 kb on + strand, within HGI48_RS02630 at 571.076 kb on - strand, within HGI48_RS02630 at 571.076 kb on - strand, within HGI48_RS02630 at 571.150 kb on + strand, within HGI48_RS02630 at 571.150 kb on + strand, within HGI48_RS02630 at 571.150 kb on + strand, within HGI48_RS02630 at 571.171 kb on + strand, within HGI48_RS02630 at 571.172 kb on - strand, within HGI48_RS02630 at 571.223 kb on + strand, within HGI48_RS02630 at 571.227 kb on + strand, within HGI48_RS02630 at 571.227 kb on + strand, within HGI48_RS02630 at 571.227 kb on + strand, within HGI48_RS02630 at 571.228 kb on - strand, within HGI48_RS02630 at 571.228 kb on - strand, within HGI48_RS02630 at 571.228 kb on - strand, within HGI48_RS02630 at 571.228 kb on - strand, within HGI48_RS02630 at 571.228 kb on - strand, within HGI48_RS02630 at 571.236 kb on + strand, within HGI48_RS02630 at 571.237 kb on - strand at 571.237 kb on - strand, within HGI48_RS02630 at 571.240 kb on + strand, within HGI48_RS02630 at 571.240 kb on + strand, within HGI48_RS02630 at 571.305 kb on + strand, within HGI48_RS02630 at 571.305 kb on + strand, within HGI48_RS02630 at 571.305 kb on + strand, within HGI48_RS02630 at 571.306 kb on - strand at 571.318 kb on + strand at 571.370 kb on + strand at 571.371 kb on - strand, within HGI48_RS02630 at 571.395 kb on + strand at 571.459 kb on + strand at 571.470 kb on + strand, within HGI48_RS02630 at 571.471 kb on - strand at 571.653 kb on + strand, within HGI48_RS02630 at 571.688 kb on - strand, within HGI48_RS02630 at 571.691 kb on - strand, within HGI48_RS02630 at 571.696 kb on - strand, within HGI48_RS02630
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 568,777 - HGI48_RS02620 0.28 -1.3 568,800 + HGI48_RS02620 0.29 +0.4 568,924 + HGI48_RS02620 0.38 -0.7 568,940 + HGI48_RS02620 0.39 -1.6 568,940 + +0.7 568,941 - HGI48_RS02620 0.39 +0.7 569,003 + HGI48_RS02620 0.44 -0.9 569,011 + HGI48_RS02620 0.45 -1.8 569,027 + HGI48_RS02620 0.46 -2.0 569,028 - HGI48_RS02620 0.46 +0.8 569,100 + HGI48_RS02620 0.51 +1.0 569,187 - HGI48_RS02620 0.57 -0.1 569,249 - HGI48_RS02620 0.62 -0.3 569,249 - -0.9 569,270 + +0.1 569,286 + HGI48_RS02620 0.64 -0.3 569,321 + -0.9 569,321 + HGI48_RS02620 0.67 +0.1 569,322 - HGI48_RS02620 0.67 -1.7 569,402 + HGI48_RS02620 0.73 -0.3 569,442 + HGI48_RS02620 0.76 -0.9 569,443 - HGI48_RS02620 0.76 -1.9 569,483 - HGI48_RS02620 0.79 +0.3 569,534 + HGI48_RS02620 0.82 -1.9 569,582 - HGI48_RS02620 0.86 -1.9 569,656 + +0.7 569,657 - -1.3 569,661 + +0.7 569,711 - +0.4 569,754 + +2.4 569,755 - -0.3 569,756 + -1.3 569,800 - -0.9 569,802 + +0.7 569,838 + +0.3 569,862 + +1.4 569,877 + HGI48_RS02625 0.11 -0.9 570,004 + HGI48_RS02625 0.24 -2.5 570,004 + HGI48_RS02625 0.24 -3.6 570,004 + HGI48_RS02625 0.24 -0.7 570,005 - +0.1 570,010 + HGI48_RS02625 0.24 -0.7 570,010 + HGI48_RS02625 0.24 -0.3 570,010 + HGI48_RS02625 0.24 -2.1 570,011 - HGI48_RS02625 0.24 -1.7 570,132 - HGI48_RS02625 0.37 -0.4 570,154 + HGI48_RS02625 0.39 +0.2 570,154 + HGI48_RS02625 0.39 -0.8 570,154 + HGI48_RS02625 0.39 +0.1 570,155 - HGI48_RS02625 0.39 -0.9 570,162 + HGI48_RS02625 0.40 -0.2 570,162 + HGI48_RS02625 0.40 -1.7 570,163 - HGI48_RS02625 0.40 +0.3 570,163 - HGI48_RS02625 0.40 -1.8 570,163 - HGI48_RS02625 0.40 -0.9 570,163 - HGI48_RS02625 0.40 -2.0 570,180 + +0.1 570,180 + HGI48_RS02625 0.41 -2.5 570,180 + HGI48_RS02625 0.41 -0.5 570,180 + HGI48_RS02625 0.41 -0.4 570,181 - HGI48_RS02625 0.42 -0.3 570,181 - HGI48_RS02625 0.42 +0.1 570,181 - HGI48_RS02625 0.42 -0.1 570,191 + HGI48_RS02625 0.43 -0.6 570,191 + HGI48_RS02625 0.43 -0.2 570,192 - HGI48_RS02625 0.43 +1.2 570,192 - HGI48_RS02625 0.43 -0.6 570,192 - HGI48_RS02625 0.43 -0.7 570,233 + +1.4 570,233 + HGI48_RS02625 0.47 +0.1 570,234 - HGI48_RS02625 0.47 +0.2 570,235 + HGI48_RS02625 0.47 +0.8 570,236 - HGI48_RS02625 0.47 -0.1 570,265 + HGI48_RS02625 0.50 -0.7 570,265 + HGI48_RS02625 0.50 +0.5 570,266 - HGI48_RS02625 0.50 -1.7 570,266 - HGI48_RS02625 0.50 -0.8 570,337 - HGI48_RS02625 0.57 +2.4 570,356 + HGI48_RS02625 0.59 -0.7 570,357 - HGI48_RS02625 0.59 +1.5 570,357 - HGI48_RS02625 0.59 -2.1 570,361 + HGI48_RS02625 0.60 -0.9 570,361 + HGI48_RS02625 0.60 -0.3 570,372 + HGI48_RS02625 0.61 -1.1 570,373 - HGI48_RS02625 0.61 -1.7 570,395 - HGI48_RS02625 0.63 -0.3 570,396 + HGI48_RS02625 0.63 -2.1 570,396 + HGI48_RS02625 0.63 -0.9 570,410 - HGI48_RS02625 0.65 +0.9 570,453 - +1.7 570,475 + HGI48_RS02625 0.71 +1.0 570,476 - HGI48_RS02625 0.71 +0.2 570,615 - HGI48_RS02625 0.85 +1.3 570,674 + -1.1 570,675 - +0.7 570,675 - -0.6 570,675 - -1.2 570,747 + -1.3 570,747 + -0.3 570,748 - -0.9 570,897 + HGI48_RS02630 0.11 +0.3 570,922 + HGI48_RS02630 0.13 -0.7 570,923 - HGI48_RS02630 0.13 +0.3 570,958 - HGI48_RS02630 0.16 -0.7 571,000 - HGI48_RS02630 0.19 +1.0 571,014 + HGI48_RS02630 0.20 -1.9 571,071 + HGI48_RS02630 0.25 +0.8 571,071 + +1.1 571,075 + HGI48_RS02630 0.25 -1.0 571,076 - HGI48_RS02630 0.25 +0.1 571,076 - HGI48_RS02630 0.25 -0.3 571,150 + HGI48_RS02630 0.31 -2.3 571,150 + HGI48_RS02630 0.31 -3.0 571,150 + HGI48_RS02630 0.31 -1.9 571,171 + HGI48_RS02630 0.33 -1.3 571,172 - HGI48_RS02630 0.33 -1.5 571,223 + HGI48_RS02630 0.37 +0.3 571,227 + HGI48_RS02630 0.38 -1.7 571,227 + HGI48_RS02630 0.38 +0.7 571,227 + HGI48_RS02630 0.38 -2.5 571,228 - HGI48_RS02630 0.38 -1.6 571,228 - HGI48_RS02630 0.38 -1.9 571,228 - HGI48_RS02630 0.38 +0.3 571,228 - HGI48_RS02630 0.38 +0.3 571,228 - HGI48_RS02630 0.38 -1.2 571,236 + HGI48_RS02630 0.39 -1.7 571,237 - -0.9 571,237 - HGI48_RS02630 0.39 -1.1 571,240 + HGI48_RS02630 0.39 -1.9 571,240 + HGI48_RS02630 0.39 +1.1 571,305 + HGI48_RS02630 0.44 +0.3 571,305 + HGI48_RS02630 0.44 -0.1 571,305 + HGI48_RS02630 0.44 +1.5 571,306 - +1.1 571,318 + -0.9 571,370 + -0.9 571,371 - HGI48_RS02630 0.50 -0.3 571,395 + -0.9 571,459 + -0.9 571,470 + HGI48_RS02630 0.58 -2.1 571,471 - -0.3 571,653 + HGI48_RS02630 0.73 +0.3 571,688 - HGI48_RS02630 0.76 +0.5 571,691 - HGI48_RS02630 0.76 +2.0 571,696 - HGI48_RS02630 0.76 -1.3
Or see this region's nucleotide sequence