Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS02455 and HGI48_RS02460 are separated by 104 nucleotides HGI48_RS02460 and HGI48_RS02465 are separated by 73 nucleotides
HGI48_RS02455: HGI48_RS02455 - iron ABC transporter permease, at 531,264 to 532,262
_RS02455
HGI48_RS02460: HGI48_RS02460 - alkyl hydroperoxide reductase subunit C, at 532,367 to 532,930
_RS02460
HGI48_RS02465: HGI48_RS02465 - alkyl hydroperoxide reductase subunit F, at 533,004 to 534,566
_RS02465
Position (kb) 532
533 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 531.738 kb on - strand, within HGI48_RS02455 at 531.738 kb on - strand, within HGI48_RS02455 at 531.738 kb on - strand at 531.768 kb on + strand, within HGI48_RS02455 at 531.768 kb on + strand, within HGI48_RS02455 at 531.768 kb on + strand, within HGI48_RS02455 at 531.769 kb on - strand, within HGI48_RS02455 at 531.769 kb on - strand, within HGI48_RS02455 at 532.260 kb on + strand at 532.260 kb on + strand at 532.271 kb on + strand at 532.324 kb on + strand at 532.324 kb on + strand at 532.324 kb on + strand at 532.325 kb on - strand at 532.325 kb on - strand at 532.325 kb on - strand at 532.325 kb on - strand at 532.325 kb on - strand at 532.325 kb on - strand at 532.345 kb on + strand at 532.345 kb on + strand at 532.345 kb on + strand at 532.345 kb on + strand at 532.346 kb on - strand at 532.346 kb on - strand at 532.346 kb on - strand at 532.352 kb on + strand at 532.352 kb on + strand at 532.352 kb on + strand at 532.353 kb on - strand at 532.353 kb on - strand at 532.353 kb on - strand at 532.353 kb on - strand at 532.381 kb on + strand at 532.381 kb on + strand at 532.382 kb on - strand at 532.382 kb on - strand at 532.382 kb on - strand at 532.384 kb on + strand at 532.385 kb on - strand at 532.482 kb on - strand, within HGI48_RS02460 at 532.496 kb on - strand, within HGI48_RS02460 at 532.538 kb on + strand, within HGI48_RS02460 at 532.538 kb on + strand, within HGI48_RS02460 at 532.539 kb on - strand, within HGI48_RS02460 at 532.563 kb on + strand, within HGI48_RS02460 at 532.571 kb on + strand, within HGI48_RS02460 at 532.571 kb on + strand, within HGI48_RS02460 at 532.571 kb on + strand, within HGI48_RS02460 at 532.572 kb on - strand at 532.572 kb on - strand, within HGI48_RS02460 at 532.572 kb on - strand, within HGI48_RS02460 at 532.597 kb on + strand, within HGI48_RS02460 at 532.598 kb on - strand, within HGI48_RS02460 at 532.646 kb on + strand, within HGI48_RS02460 at 532.646 kb on + strand, within HGI48_RS02460 at 532.646 kb on + strand, within HGI48_RS02460 at 532.647 kb on - strand, within HGI48_RS02460 at 532.647 kb on - strand, within HGI48_RS02460 at 532.647 kb on - strand, within HGI48_RS02460 at 532.647 kb on - strand, within HGI48_RS02460 at 532.647 kb on - strand, within HGI48_RS02460 at 532.647 kb on - strand, within HGI48_RS02460 at 532.835 kb on + strand, within HGI48_RS02460 at 532.928 kb on + strand at 532.998 kb on + strand at 532.998 kb on + strand at 533.003 kb on + strand at 533.003 kb on + strand at 533.004 kb on - strand at 533.015 kb on + strand at 533.040 kb on + strand at 533.176 kb on + strand, within HGI48_RS02465 at 533.264 kb on + strand, within HGI48_RS02465 at 533.326 kb on + strand, within HGI48_RS02465 at 533.327 kb on - strand, within HGI48_RS02465 at 533.373 kb on + strand, within HGI48_RS02465 at 533.373 kb on + strand, within HGI48_RS02465 at 533.373 kb on + strand, within HGI48_RS02465 at 533.374 kb on - strand, within HGI48_RS02465 at 533.374 kb on - strand, within HGI48_RS02465 at 533.374 kb on - strand, within HGI48_RS02465 at 533.374 kb on - strand, within HGI48_RS02465 at 533.376 kb on + strand, within HGI48_RS02465 at 533.376 kb on + strand at 533.377 kb on - strand, within HGI48_RS02465 at 533.425 kb on + strand, within HGI48_RS02465 at 533.426 kb on - strand, within HGI48_RS02465 at 533.426 kb on - strand, within HGI48_RS02465 at 533.504 kb on + strand, within HGI48_RS02465 at 533.524 kb on + strand, within HGI48_RS02465 at 533.525 kb on - strand, within HGI48_RS02465 at 533.525 kb on - strand, within HGI48_RS02465 at 533.588 kb on - strand, within HGI48_RS02465 at 533.641 kb on - strand, within HGI48_RS02465 at 533.641 kb on - strand, within HGI48_RS02465 at 533.641 kb on - strand, within HGI48_RS02465 at 533.641 kb on - strand, within HGI48_RS02465 at 533.641 kb on - strand, within HGI48_RS02465 at 533.641 kb on - strand, within HGI48_RS02465 at 533.691 kb on + strand, within HGI48_RS02465 at 533.691 kb on + strand, within HGI48_RS02465 at 533.775 kb on + strand, within HGI48_RS02465 at 533.775 kb on + strand, within HGI48_RS02465 at 533.776 kb on - strand, within HGI48_RS02465 at 533.841 kb on + strand, within HGI48_RS02465 at 533.841 kb on + strand, within HGI48_RS02465 at 533.841 kb on + strand, within HGI48_RS02465 at 533.842 kb on - strand, within HGI48_RS02465
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 531,738 - HGI48_RS02455 0.47 -0.0 531,738 - HGI48_RS02455 0.47 -0.7 531,738 - +1.1 531,768 + HGI48_RS02455 0.50 +0.2 531,768 + HGI48_RS02455 0.50 -1.9 531,768 + HGI48_RS02455 0.50 -1.3 531,769 - HGI48_RS02455 0.51 -0.2 531,769 - HGI48_RS02455 0.51 -2.9 532,260 + -1.9 532,260 + -0.5 532,271 + -1.7 532,324 + +0.0 532,324 + +1.1 532,324 + -1.2 532,325 - -1.7 532,325 - -0.7 532,325 - +0.1 532,325 - -2.6 532,325 - -0.7 532,325 - +0.2 532,345 + -1.3 532,345 + -2.0 532,345 + +0.7 532,345 + +1.2 532,346 - -0.5 532,346 - -0.8 532,346 - -0.3 532,352 + +0.2 532,352 + +2.0 532,352 + -1.1 532,353 - +0.7 532,353 - -0.1 532,353 - -0.9 532,353 - -1.9 532,381 + +0.3 532,381 + -3.2 532,382 - +0.5 532,382 - +0.3 532,382 - -0.9 532,384 + -0.8 532,385 - +1.0 532,482 - HGI48_RS02460 0.20 +0.9 532,496 - HGI48_RS02460 0.23 -0.7 532,538 + HGI48_RS02460 0.30 +0.4 532,538 + HGI48_RS02460 0.30 -1.5 532,539 - HGI48_RS02460 0.30 -0.6 532,563 + HGI48_RS02460 0.35 +0.7 532,571 + HGI48_RS02460 0.36 +0.4 532,571 + HGI48_RS02460 0.36 -1.1 532,571 + HGI48_RS02460 0.36 -2.3 532,572 - +1.1 532,572 - HGI48_RS02460 0.36 -0.2 532,572 - HGI48_RS02460 0.36 -0.9 532,597 + HGI48_RS02460 0.41 +0.5 532,598 - HGI48_RS02460 0.41 +0.5 532,646 + HGI48_RS02460 0.49 -1.7 532,646 + HGI48_RS02460 0.49 -0.3 532,646 + HGI48_RS02460 0.49 -0.7 532,647 - HGI48_RS02460 0.50 -1.7 532,647 - HGI48_RS02460 0.50 -0.3 532,647 - HGI48_RS02460 0.50 -1.1 532,647 - HGI48_RS02460 0.50 +0.7 532,647 - HGI48_RS02460 0.50 -0.3 532,647 - HGI48_RS02460 0.50 -1.3 532,835 + HGI48_RS02460 0.83 -2.3 532,928 + -0.2 532,998 + +0.4 532,998 + -0.0 533,003 + -1.3 533,003 + +0.4 533,004 - +0.5 533,015 + +1.0 533,040 + +1.3 533,176 + HGI48_RS02465 0.11 +0.6 533,264 + HGI48_RS02465 0.17 +1.9 533,326 + HGI48_RS02465 0.21 -0.1 533,327 - HGI48_RS02465 0.21 +0.2 533,373 + HGI48_RS02465 0.24 +0.2 533,373 + HGI48_RS02465 0.24 +0.3 533,373 + HGI48_RS02465 0.24 -0.5 533,374 - HGI48_RS02465 0.24 +0.1 533,374 - HGI48_RS02465 0.24 +1.4 533,374 - HGI48_RS02465 0.24 +0.7 533,374 - HGI48_RS02465 0.24 +0.0 533,376 + HGI48_RS02465 0.24 -0.7 533,376 + +1.7 533,377 - HGI48_RS02465 0.24 +0.4 533,425 + HGI48_RS02465 0.27 -0.1 533,426 - HGI48_RS02465 0.27 -2.7 533,426 - HGI48_RS02465 0.27 -0.5 533,504 + HGI48_RS02465 0.32 +0.7 533,524 + HGI48_RS02465 0.33 -0.0 533,525 - HGI48_RS02465 0.33 +0.5 533,525 - HGI48_RS02465 0.33 +1.4 533,588 - HGI48_RS02465 0.37 -2.3 533,641 - HGI48_RS02465 0.41 +0.2 533,641 - HGI48_RS02465 0.41 +0.8 533,641 - HGI48_RS02465 0.41 +1.5 533,641 - HGI48_RS02465 0.41 +0.5 533,641 - HGI48_RS02465 0.41 +0.2 533,641 - HGI48_RS02465 0.41 +0.2 533,691 + HGI48_RS02465 0.44 -0.1 533,691 + HGI48_RS02465 0.44 +1.8 533,775 + HGI48_RS02465 0.49 -1.7 533,775 + HGI48_RS02465 0.49 -1.5 533,776 - HGI48_RS02465 0.49 -0.9 533,841 + HGI48_RS02465 0.54 -1.9 533,841 + HGI48_RS02465 0.54 +1.7 533,841 + HGI48_RS02465 0.54 -1.5 533,842 - HGI48_RS02465 0.54 +0.8
Or see this region's nucleotide sequence