Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS02280 and HGI48_RS02285 are separated by 26 nucleotides HGI48_RS02285 and HGI48_RS02290 are separated by 17 nucleotides HGI48_RS02290 and HGI48_RS02295 are separated by 271 nucleotides HGI48_RS02295 and HGI48_RS02300 are separated by 65 nucleotides
HGI48_RS02280: HGI48_RS02280 - HTH-type transcriptional activator RhaS, at 496,016 to 496,846
_RS02280
HGI48_RS02285: HGI48_RS02285 - HTH-type transcriptional activator RhaR, at 496,873 to 497,727
_RS02285
HGI48_RS02290: HGI48_RS02290 - hypothetical protein, at 497,745 to 498,029
_RS02290
HGI48_RS02295: HGI48_RS02295 - DUF2778 domain-containing protein, at 498,301 to 498,819
_RS02295
HGI48_RS02300: HGI48_RS02300 - type VI secretion system tube protein Hcp, at 498,885 to 499,364
_RS02300
Position (kb) 497
498
499 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 496.844 kb on + strand at 496.845 kb on - strand at 496.845 kb on - strand at 496.845 kb on - strand at 496.851 kb on - strand at 496.895 kb on + strand at 496.930 kb on - strand at 497.074 kb on + strand, within HGI48_RS02285 at 497.075 kb on - strand, within HGI48_RS02285 at 497.075 kb on - strand at 497.101 kb on + strand, within HGI48_RS02285 at 497.101 kb on + strand, within HGI48_RS02285 at 497.102 kb on - strand, within HGI48_RS02285 at 497.140 kb on + strand, within HGI48_RS02285 at 497.140 kb on + strand, within HGI48_RS02285 at 497.140 kb on + strand, within HGI48_RS02285 at 497.141 kb on - strand, within HGI48_RS02285 at 497.141 kb on - strand, within HGI48_RS02285 at 497.141 kb on - strand, within HGI48_RS02285 at 497.141 kb on - strand, within HGI48_RS02285 at 497.141 kb on - strand at 497.310 kb on - strand, within HGI48_RS02285 at 497.415 kb on - strand, within HGI48_RS02285 at 497.503 kb on - strand, within HGI48_RS02285 at 497.543 kb on - strand, within HGI48_RS02285 at 497.543 kb on - strand, within HGI48_RS02285 at 497.562 kb on - strand, within HGI48_RS02285 at 497.746 kb on + strand at 497.746 kb on + strand at 497.746 kb on + strand at 497.746 kb on + strand at 497.786 kb on - strand, within HGI48_RS02290 at 497.815 kb on + strand, within HGI48_RS02290 at 497.910 kb on + strand at 497.910 kb on + strand, within HGI48_RS02290 at 497.947 kb on + strand, within HGI48_RS02290 at 497.951 kb on + strand at 497.952 kb on - strand, within HGI48_RS02290 at 497.952 kb on - strand, within HGI48_RS02290 at 497.952 kb on - strand, within HGI48_RS02290 at 497.952 kb on - strand, within HGI48_RS02290 at 497.952 kb on - strand at 497.960 kb on - strand, within HGI48_RS02290 at 497.994 kb on + strand, within HGI48_RS02290 at 498.002 kb on + strand at 498.034 kb on + strand at 498.095 kb on + strand at 498.100 kb on - strand at 498.108 kb on + strand at 498.108 kb on + strand at 498.109 kb on - strand at 498.114 kb on + strand at 498.248 kb on + strand at 498.249 kb on - strand at 498.249 kb on - strand at 498.250 kb on + strand at 498.251 kb on - strand at 498.251 kb on - strand at 498.251 kb on - strand at 498.251 kb on - strand at 498.266 kb on - strand at 498.269 kb on - strand at 498.282 kb on + strand at 498.293 kb on + strand at 498.363 kb on + strand, within HGI48_RS02295 at 498.364 kb on - strand, within HGI48_RS02295 at 498.388 kb on + strand, within HGI48_RS02295 at 498.423 kb on - strand, within HGI48_RS02295 at 498.439 kb on - strand, within HGI48_RS02295 at 498.452 kb on - strand, within HGI48_RS02295 at 498.505 kb on + strand, within HGI48_RS02295 at 498.513 kb on + strand, within HGI48_RS02295 at 498.513 kb on + strand, within HGI48_RS02295 at 498.513 kb on + strand, within HGI48_RS02295 at 498.514 kb on - strand, within HGI48_RS02295 at 498.514 kb on - strand, within HGI48_RS02295 at 498.514 kb on - strand, within HGI48_RS02295 at 498.514 kb on - strand, within HGI48_RS02295 at 498.514 kb on - strand, within HGI48_RS02295 at 498.514 kb on - strand, within HGI48_RS02295 at 498.567 kb on + strand, within HGI48_RS02295 at 498.568 kb on - strand, within HGI48_RS02295 at 498.583 kb on + strand, within HGI48_RS02295 at 498.588 kb on + strand, within HGI48_RS02295 at 498.588 kb on + strand, within HGI48_RS02295 at 498.589 kb on - strand, within HGI48_RS02295 at 498.589 kb on - strand, within HGI48_RS02295 at 498.615 kb on + strand, within HGI48_RS02295 at 498.659 kb on + strand, within HGI48_RS02295 at 498.699 kb on + strand at 498.699 kb on + strand, within HGI48_RS02295 at 498.699 kb on + strand at 498.699 kb on + strand, within HGI48_RS02295 at 498.700 kb on - strand, within HGI48_RS02295 at 498.700 kb on - strand, within HGI48_RS02295 at 498.700 kb on - strand, within HGI48_RS02295 at 498.700 kb on - strand, within HGI48_RS02295 at 498.760 kb on + strand at 498.760 kb on + strand, within HGI48_RS02295 at 498.761 kb on - strand, within HGI48_RS02295 at 498.763 kb on + strand, within HGI48_RS02295 at 498.764 kb on - strand, within HGI48_RS02295 at 498.779 kb on + strand at 498.780 kb on - strand at 498.811 kb on + strand at 498.812 kb on - strand at 498.820 kb on - strand at 498.820 kb on - strand at 498.840 kb on - strand at 498.865 kb on + strand at 498.870 kb on + strand at 498.870 kb on + strand at 498.870 kb on + strand at 498.871 kb on - strand at 498.871 kb on - strand at 498.871 kb on - strand at 498.913 kb on + strand at 498.920 kb on + strand at 498.920 kb on + strand at 498.920 kb on + strand at 498.921 kb on - strand at 498.969 kb on + strand, within HGI48_RS02300 at 498.970 kb on - strand, within HGI48_RS02300 at 499.021 kb on + strand at 499.021 kb on + strand, within HGI48_RS02300 at 499.022 kb on - strand, within HGI48_RS02300 at 499.029 kb on - strand, within HGI48_RS02300
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 496,844 + +0.1 496,845 - +0.5 496,845 - +0.1 496,845 - +0.8 496,851 - +1.9 496,895 + +0.2 496,930 - -0.1 497,074 + HGI48_RS02285 0.24 +2.9 497,075 - HGI48_RS02285 0.24 -1.7 497,075 - +1.9 497,101 + HGI48_RS02285 0.27 -0.2 497,101 + HGI48_RS02285 0.27 -1.0 497,102 - HGI48_RS02285 0.27 -0.3 497,140 + HGI48_RS02285 0.31 +0.1 497,140 + HGI48_RS02285 0.31 +0.5 497,140 + HGI48_RS02285 0.31 -0.4 497,141 - HGI48_RS02285 0.31 -2.3 497,141 - HGI48_RS02285 0.31 +1.3 497,141 - HGI48_RS02285 0.31 -0.2 497,141 - HGI48_RS02285 0.31 +1.4 497,141 - +2.3 497,310 - HGI48_RS02285 0.51 +0.2 497,415 - HGI48_RS02285 0.63 +1.3 497,503 - HGI48_RS02285 0.74 -2.3 497,543 - HGI48_RS02285 0.78 +0.3 497,543 - HGI48_RS02285 0.78 -0.1 497,562 - HGI48_RS02285 0.81 -0.1 497,746 + -0.3 497,746 + +1.6 497,746 + -0.9 497,746 + +0.9 497,786 - HGI48_RS02290 0.14 +0.4 497,815 + HGI48_RS02290 0.25 -1.3 497,910 + +2.3 497,910 + HGI48_RS02290 0.58 -1.3 497,947 + HGI48_RS02290 0.71 +1.0 497,951 + +2.3 497,952 - HGI48_RS02290 0.73 -1.8 497,952 - HGI48_RS02290 0.73 -3.3 497,952 - HGI48_RS02290 0.73 -0.4 497,952 - HGI48_RS02290 0.73 -1.3 497,952 - -0.9 497,960 - HGI48_RS02290 0.75 -2.5 497,994 + HGI48_RS02290 0.87 -2.3 498,002 + -2.5 498,034 + +0.3 498,095 + +0.4 498,100 - +1.7 498,108 + -1.7 498,108 + +0.8 498,109 - -0.3 498,114 + +0.7 498,248 + +0.7 498,249 - -2.5 498,249 - -0.1 498,250 + -0.5 498,251 - +0.3 498,251 - -1.7 498,251 - -0.7 498,251 - +0.9 498,266 - -0.2 498,269 - +2.3 498,282 + +1.4 498,293 + +1.1 498,363 + HGI48_RS02295 0.12 +0.3 498,364 - HGI48_RS02295 0.12 +0.5 498,388 + HGI48_RS02295 0.17 -0.3 498,423 - HGI48_RS02295 0.24 -0.9 498,439 - HGI48_RS02295 0.27 -0.3 498,452 - HGI48_RS02295 0.29 -0.3 498,505 + HGI48_RS02295 0.39 -0.5 498,513 + HGI48_RS02295 0.41 +0.3 498,513 + HGI48_RS02295 0.41 -1.1 498,513 + HGI48_RS02295 0.41 +0.3 498,514 - HGI48_RS02295 0.41 -0.2 498,514 - HGI48_RS02295 0.41 -0.1 498,514 - HGI48_RS02295 0.41 -0.7 498,514 - HGI48_RS02295 0.41 +0.7 498,514 - HGI48_RS02295 0.41 +0.1 498,514 - HGI48_RS02295 0.41 -0.3 498,567 + HGI48_RS02295 0.51 -1.3 498,568 - HGI48_RS02295 0.51 -1.2 498,583 + HGI48_RS02295 0.54 -0.1 498,588 + HGI48_RS02295 0.55 -0.7 498,588 + HGI48_RS02295 0.55 -1.2 498,589 - HGI48_RS02295 0.55 -0.7 498,589 - HGI48_RS02295 0.55 +0.5 498,615 + HGI48_RS02295 0.61 -0.1 498,659 + HGI48_RS02295 0.69 +0.2 498,699 + -0.3 498,699 + HGI48_RS02295 0.77 +0.5 498,699 + -0.9 498,699 + HGI48_RS02295 0.77 -2.1 498,700 - HGI48_RS02295 0.77 +0.3 498,700 - HGI48_RS02295 0.77 -1.3 498,700 - HGI48_RS02295 0.77 -0.7 498,700 - HGI48_RS02295 0.77 -2.3 498,760 + -0.9 498,760 + HGI48_RS02295 0.88 -1.1 498,761 - HGI48_RS02295 0.89 -0.8 498,763 + HGI48_RS02295 0.89 +0.9 498,764 - HGI48_RS02295 0.89 +0.2 498,779 + -0.3 498,780 - -0.2 498,811 + -0.3 498,812 - -0.3 498,820 - -0.9 498,820 - +0.3 498,840 - -1.7 498,865 + -0.7 498,870 + -0.7 498,870 + -1.0 498,870 + +0.3 498,871 - -1.3 498,871 - -0.7 498,871 - -1.7 498,913 + -2.2 498,920 + -0.3 498,920 + +1.5 498,920 + +2.0 498,921 - -0.7 498,969 + HGI48_RS02300 0.17 -1.7 498,970 - HGI48_RS02300 0.18 -2.3 499,021 + -0.9 499,021 + HGI48_RS02300 0.28 -1.7 499,022 - HGI48_RS02300 0.29 -0.3 499,029 - HGI48_RS02300 0.30 -0.7
Or see this region's nucleotide sequence