Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS02165

Experiment: PDB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHGI48_RS02155 and HGI48_RS02160 are separated by 83 nucleotidesHGI48_RS02160 and HGI48_RS02165 are separated by 65 nucleotidesHGI48_RS02165 and HGI48_RS02170 are separated by 34 nucleotidesHGI48_RS02170 and HGI48_RS02175 are separated by 69 nucleotides HGI48_RS02155: HGI48_RS02155 - SDR family oxidoreductase, at 471,517 to 472,314 _RS02155 HGI48_RS02160: HGI48_RS02160 - cytolytic delta-endotoxin, at 472,398 to 473,060 _RS02160 HGI48_RS02165: HGI48_RS02165 - type-1Ba cytolytic delta-endotoxin, at 473,126 to 473,737 _RS02165 HGI48_RS02170: HGI48_RS02170 - type-2Aa cytolytic delta-endotoxin, at 473,772 to 474,371 _RS02170 HGI48_RS02175: HGI48_RS02175 - delta-endotoxin CytB, at 474,441 to 475,076 _RS02175 Position (kb) 473 474Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 472.264 kb on + strandat 472.264 kb on + strandat 472.264 kb on + strandat 472.264 kb on + strandat 472.265 kb on - strandat 472.265 kb on - strandat 472.265 kb on - strandat 472.265 kb on - strandat 472.266 kb on + strandat 472.266 kb on + strandat 472.266 kb on + strandat 472.266 kb on + strandat 472.267 kb on - strandat 472.407 kb on + strandat 472.447 kb on + strandat 472.447 kb on + strandat 472.447 kb on + strandat 472.447 kb on + strandat 472.447 kb on + strandat 472.447 kb on + strandat 472.447 kb on + strandat 472.448 kb on - strandat 472.448 kb on - strandat 472.473 kb on - strand, within HGI48_RS02160at 472.473 kb on - strand, within HGI48_RS02160at 472.560 kb on + strand, within HGI48_RS02160at 472.560 kb on + strand, within HGI48_RS02160at 472.563 kb on + strand, within HGI48_RS02160at 472.563 kb on + strand, within HGI48_RS02160at 472.564 kb on - strand, within HGI48_RS02160at 472.564 kb on - strandat 472.570 kb on + strand, within HGI48_RS02160at 472.571 kb on - strand, within HGI48_RS02160at 472.571 kb on - strand, within HGI48_RS02160at 472.574 kb on + strand, within HGI48_RS02160at 472.574 kb on + strand, within HGI48_RS02160at 472.574 kb on + strand, within HGI48_RS02160at 472.574 kb on + strand, within HGI48_RS02160at 472.575 kb on - strand, within HGI48_RS02160at 472.575 kb on - strand, within HGI48_RS02160at 472.575 kb on - strand, within HGI48_RS02160at 472.575 kb on - strandat 472.576 kb on + strand, within HGI48_RS02160at 472.576 kb on + strand, within HGI48_RS02160at 472.577 kb on - strand, within HGI48_RS02160at 472.577 kb on - strand, within HGI48_RS02160at 472.577 kb on - strand, within HGI48_RS02160at 472.577 kb on - strandat 472.589 kb on + strand, within HGI48_RS02160at 472.590 kb on - strand, within HGI48_RS02160at 472.590 kb on - strand, within HGI48_RS02160at 472.721 kb on + strand, within HGI48_RS02160at 472.721 kb on + strand, within HGI48_RS02160at 472.722 kb on - strand, within HGI48_RS02160at 472.722 kb on - strandat 472.798 kb on - strand, within HGI48_RS02160at 472.857 kb on + strand, within HGI48_RS02160at 472.902 kb on - strandat 472.903 kb on + strand, within HGI48_RS02160at 472.903 kb on + strand, within HGI48_RS02160at 472.962 kb on + strand, within HGI48_RS02160at 472.963 kb on - strandat 472.967 kb on + strand, within HGI48_RS02160at 472.967 kb on + strand, within HGI48_RS02160at 472.967 kb on + strandat 472.968 kb on - strand, within HGI48_RS02160at 473.022 kb on - strandat 473.022 kb on - strandat 473.024 kb on - strandat 473.028 kb on - strandat 473.048 kb on + strandat 473.051 kb on + strandat 473.052 kb on - strandat 473.052 kb on - strandat 473.052 kb on - strandat 473.060 kb on + strandat 473.061 kb on - strandat 473.061 kb on - strandat 473.061 kb on - strandat 473.061 kb on - strandat 473.216 kb on + strand, within HGI48_RS02165at 473.216 kb on + strand, within HGI48_RS02165at 473.217 kb on - strand, within HGI48_RS02165at 473.217 kb on - strand, within HGI48_RS02165at 473.309 kb on + strand, within HGI48_RS02165at 473.310 kb on - strand, within HGI48_RS02165at 473.310 kb on - strand, within HGI48_RS02165at 473.310 kb on - strand, within HGI48_RS02165at 473.317 kb on - strand, within HGI48_RS02165at 473.356 kb on + strand, within HGI48_RS02165at 473.356 kb on + strand, within HGI48_RS02165at 473.357 kb on - strand, within HGI48_RS02165at 473.362 kb on + strand, within HGI48_RS02165at 473.428 kb on + strand, within HGI48_RS02165at 473.430 kb on + strand, within HGI48_RS02165at 473.430 kb on + strand, within HGI48_RS02165at 473.430 kb on + strand, within HGI48_RS02165at 473.430 kb on + strand, within HGI48_RS02165at 473.431 kb on - strand, within HGI48_RS02165at 473.431 kb on - strand, within HGI48_RS02165at 473.431 kb on - strandat 473.431 kb on - strand, within HGI48_RS02165at 473.431 kb on - strand, within HGI48_RS02165at 473.431 kb on - strand, within HGI48_RS02165at 473.431 kb on - strand, within HGI48_RS02165at 473.431 kb on - strand, within HGI48_RS02165at 473.431 kb on - strand, within HGI48_RS02165at 473.443 kb on + strand, within HGI48_RS02165at 473.447 kb on - strand, within HGI48_RS02165at 473.530 kb on + strand, within HGI48_RS02165at 473.530 kb on + strand, within HGI48_RS02165at 473.531 kb on - strand, within HGI48_RS02165at 473.531 kb on - strand, within HGI48_RS02165at 473.531 kb on - strandat 473.609 kb on - strand, within HGI48_RS02165at 473.625 kb on - strand, within HGI48_RS02165at 473.625 kb on - strand, within HGI48_RS02165at 473.625 kb on - strand, within HGI48_RS02165at 473.662 kb on - strand, within HGI48_RS02165at 473.719 kb on + strandat 473.721 kb on + strandat 473.729 kb on + strandat 473.737 kb on + strandat 473.738 kb on - strandat 473.750 kb on + strandat 473.751 kb on - strandat 473.804 kb on + strandat 473.804 kb on + strandat 473.805 kb on - strandat 473.876 kb on + strand, within HGI48_RS02170at 473.876 kb on + strand, within HGI48_RS02170at 473.907 kb on + strand, within HGI48_RS02170at 473.930 kb on + strand, within HGI48_RS02170at 473.931 kb on - strand, within HGI48_RS02170at 473.940 kb on - strand, within HGI48_RS02170at 473.951 kb on + strand, within HGI48_RS02170at 473.952 kb on - strandat 473.952 kb on - strandat 473.954 kb on + strand, within HGI48_RS02170at 473.955 kb on - strand, within HGI48_RS02170at 473.955 kb on - strand, within HGI48_RS02170at 473.956 kb on + strand, within HGI48_RS02170at 473.957 kb on - strand, within HGI48_RS02170at 473.957 kb on - strandat 473.996 kb on + strand, within HGI48_RS02170at 474.002 kb on - strand, within HGI48_RS02170at 474.002 kb on - strand, within HGI48_RS02170at 474.087 kb on + strand, within HGI48_RS02170at 474.087 kb on + strand, within HGI48_RS02170at 474.087 kb on + strand, within HGI48_RS02170at 474.087 kb on + strand, within HGI48_RS02170at 474.088 kb on - strand, within HGI48_RS02170at 474.143 kb on + strand, within HGI48_RS02170at 474.143 kb on + strand, within HGI48_RS02170at 474.156 kb on + strandat 474.156 kb on + strand, within HGI48_RS02170at 474.162 kb on - strand, within HGI48_RS02170at 474.243 kb on - strand, within HGI48_RS02170at 474.270 kb on - strand, within HGI48_RS02170at 474.344 kb on + strandat 474.344 kb on + strandat 474.362 kb on + strandat 474.363 kb on - strandat 474.390 kb on - strandat 474.406 kb on - strandat 474.408 kb on + strandat 474.408 kb on + strandat 474.442 kb on + strandat 474.490 kb on + strandat 474.495 kb on - strandat 474.495 kb on - strandat 474.495 kb on - strandat 474.495 kb on - strandat 474.622 kb on + strand, within HGI48_RS02175at 474.623 kb on - strand, within HGI48_RS02175at 474.623 kb on - strand, within HGI48_RS02175at 474.623 kb on - strand, within HGI48_RS02175at 474.626 kb on + strand, within HGI48_RS02175at 474.626 kb on + strand, within HGI48_RS02175at 474.626 kb on + strand, within HGI48_RS02175at 474.626 kb on + strand, within HGI48_RS02175at 474.626 kb on + strand, within HGI48_RS02175at 474.626 kb on + strand, within HGI48_RS02175at 474.628 kb on + strand, within HGI48_RS02175at 474.629 kb on - strand, within HGI48_RS02175at 474.629 kb on - strand, within HGI48_RS02175at 474.629 kb on - strand, within HGI48_RS02175at 474.629 kb on - strand, within HGI48_RS02175at 474.629 kb on - strand, within HGI48_RS02175at 474.672 kb on - strand, within HGI48_RS02175at 474.699 kb on - strand, within HGI48_RS02175at 474.714 kb on - strand, within HGI48_RS02175at 474.714 kb on - strand, within HGI48_RS02175

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PDB
remove
472,264 + -1.4
472,264 + -1.9
472,264 + +0.3
472,264 + -1.3
472,265 - -0.1
472,265 - -3.1
472,265 - +0.2
472,265 - +1.2
472,266 + -1.6
472,266 + +1.3
472,266 + +0.7
472,266 + -1.3
472,267 - +0.0
472,407 + +0.3
472,447 + -1.9
472,447 + +0.4
472,447 + +2.6
472,447 + -0.3
472,447 + +1.5
472,447 + -0.3
472,447 + -0.9
472,448 - +0.8
472,448 - +0.2
472,473 - HGI48_RS02160 0.11 -2.3
472,473 - HGI48_RS02160 0.11 +1.5
472,560 + HGI48_RS02160 0.24 -1.1
472,560 + HGI48_RS02160 0.24 -0.7
472,563 + HGI48_RS02160 0.25 +0.3
472,563 + HGI48_RS02160 0.25 -1.5
472,564 - HGI48_RS02160 0.25 -0.8
472,564 - +0.7
472,570 + HGI48_RS02160 0.26 -1.3
472,571 - HGI48_RS02160 0.26 -1.3
472,571 - HGI48_RS02160 0.26 +1.4
472,574 + HGI48_RS02160 0.27 +0.2
472,574 + HGI48_RS02160 0.27 -0.6
472,574 + HGI48_RS02160 0.27 -1.1
472,574 + HGI48_RS02160 0.27 -0.6
472,575 - HGI48_RS02160 0.27 -0.9
472,575 - HGI48_RS02160 0.27 +1.3
472,575 - HGI48_RS02160 0.27 +0.7
472,575 - +1.7
472,576 + HGI48_RS02160 0.27 -0.3
472,576 + HGI48_RS02160 0.27 +0.9
472,577 - HGI48_RS02160 0.27 -0.1
472,577 - HGI48_RS02160 0.27 +0.7
472,577 - HGI48_RS02160 0.27 -1.5
472,577 - +0.1
472,589 + HGI48_RS02160 0.29 +0.2
472,590 - HGI48_RS02160 0.29 -2.1
472,590 - HGI48_RS02160 0.29 +1.2
472,721 + HGI48_RS02160 0.49 -0.7
472,721 + HGI48_RS02160 0.49 -0.5
472,722 - HGI48_RS02160 0.49 -0.3
472,722 - +0.7
472,798 - HGI48_RS02160 0.60 -0.1
472,857 + HGI48_RS02160 0.69 -1.6
472,902 - -0.9
472,903 + HGI48_RS02160 0.76 -0.3
472,903 + HGI48_RS02160 0.76 +0.9
472,962 + HGI48_RS02160 0.85 -2.3
472,963 - +2.3
472,967 + HGI48_RS02160 0.86 -1.9
472,967 + HGI48_RS02160 0.86 -0.1
472,967 + +0.7
472,968 - HGI48_RS02160 0.86 +2.4
473,022 - +1.0
473,022 - -1.5
473,024 - +2.3
473,028 - -0.9
473,048 + +0.3
473,051 + -0.2
473,052 - +0.7
473,052 - +0.2
473,052 - -0.9
473,060 + +0.9
473,061 - +0.3
473,061 - -2.1
473,061 - -0.6
473,061 - +1.4
473,216 + HGI48_RS02165 0.15 -3.7
473,216 + HGI48_RS02165 0.15 -1.6
473,217 - HGI48_RS02165 0.15 -1.5
473,217 - HGI48_RS02165 0.15 -2.6
473,309 + HGI48_RS02165 0.30 -1.4
473,310 - HGI48_RS02165 0.30 -1.3
473,310 - HGI48_RS02165 0.30 -1.6
473,310 - HGI48_RS02165 0.30 -0.3
473,317 - HGI48_RS02165 0.31 -1.9
473,356 + HGI48_RS02165 0.38 -1.6
473,356 + HGI48_RS02165 0.38 -1.9
473,357 - HGI48_RS02165 0.38 -0.8
473,362 + HGI48_RS02165 0.39 -2.2
473,428 + HGI48_RS02165 0.49 +0.4
473,430 + HGI48_RS02165 0.50 -1.9
473,430 + HGI48_RS02165 0.50 -2.1
473,430 + HGI48_RS02165 0.50 +0.3
473,430 + HGI48_RS02165 0.50 -0.8
473,431 - HGI48_RS02165 0.50 +1.3
473,431 - HGI48_RS02165 0.50 +1.0
473,431 - -0.3
473,431 - HGI48_RS02165 0.50 -1.6
473,431 - HGI48_RS02165 0.50 -1.9
473,431 - HGI48_RS02165 0.50 +0.7
473,431 - HGI48_RS02165 0.50 +0.7
473,431 - HGI48_RS02165 0.50 -0.5
473,431 - HGI48_RS02165 0.50 +0.3
473,443 + HGI48_RS02165 0.52 +1.5
473,447 - HGI48_RS02165 0.52 +0.3
473,530 + HGI48_RS02165 0.66 -2.9
473,530 + HGI48_RS02165 0.66 -1.0
473,531 - HGI48_RS02165 0.66 -2.5
473,531 - HGI48_RS02165 0.66 -0.7
473,531 - +2.3
473,609 - HGI48_RS02165 0.79 -1.9
473,625 - HGI48_RS02165 0.82 -2.8
473,625 - HGI48_RS02165 0.82 -1.1
473,625 - HGI48_RS02165 0.82 +0.7
473,662 - HGI48_RS02165 0.88 -2.6
473,719 + +0.1
473,721 + -1.1
473,729 + -0.9
473,737 + -0.1
473,738 - +0.4
473,750 + +1.2
473,751 - +3.5
473,804 + -2.6
473,804 + +0.7
473,805 - +0.3
473,876 + HGI48_RS02170 0.17 -0.9
473,876 + HGI48_RS02170 0.17 -0.3
473,907 + HGI48_RS02170 0.23 +0.4
473,930 + HGI48_RS02170 0.26 +0.3
473,931 - HGI48_RS02170 0.27 -0.3
473,940 - HGI48_RS02170 0.28 -0.8
473,951 + HGI48_RS02170 0.30 -2.0
473,952 - +1.4
473,952 - +1.1
473,954 + HGI48_RS02170 0.30 +0.4
473,955 - HGI48_RS02170 0.30 -0.1
473,955 - HGI48_RS02170 0.30 -0.1
473,956 + HGI48_RS02170 0.31 -1.9
473,957 - HGI48_RS02170 0.31 -0.1
473,957 - -0.3
473,996 + HGI48_RS02170 0.37 -1.7
474,002 - HGI48_RS02170 0.38 +0.3
474,002 - HGI48_RS02170 0.38 +0.9
474,087 + HGI48_RS02170 0.53 +1.3
474,087 + HGI48_RS02170 0.53 +0.5
474,087 + HGI48_RS02170 0.53 -1.3
474,087 + HGI48_RS02170 0.53 +0.3
474,088 - HGI48_RS02170 0.53 +0.7
474,143 + HGI48_RS02170 0.62 +0.0
474,143 + HGI48_RS02170 0.62 +1.3
474,156 + +0.7
474,156 + HGI48_RS02170 0.64 -1.1
474,162 - HGI48_RS02170 0.65 -0.9
474,243 - HGI48_RS02170 0.79 +0.7
474,270 - HGI48_RS02170 0.83 -1.4
474,344 + -0.0
474,344 + -0.6
474,362 + +1.6
474,363 - -1.9
474,390 - +1.1
474,406 - +0.9
474,408 + -2.6
474,408 + -0.6
474,442 + +0.1
474,490 + -0.3
474,495 - -0.5
474,495 - +0.5
474,495 - -0.3
474,495 - +1.7
474,622 + HGI48_RS02175 0.28 +0.2
474,623 - HGI48_RS02175 0.29 -1.2
474,623 - HGI48_RS02175 0.29 -0.7
474,623 - HGI48_RS02175 0.29 +0.8
474,626 + HGI48_RS02175 0.29 -1.3
474,626 + HGI48_RS02175 0.29 -0.3
474,626 + HGI48_RS02175 0.29 +0.4
474,626 + HGI48_RS02175 0.29 -1.1
474,626 + HGI48_RS02175 0.29 -0.1
474,626 + HGI48_RS02175 0.29 -1.8
474,628 + HGI48_RS02175 0.29 -0.3
474,629 - HGI48_RS02175 0.30 +0.2
474,629 - HGI48_RS02175 0.30 -0.2
474,629 - HGI48_RS02175 0.30 +0.1
474,629 - HGI48_RS02175 0.30 +1.3
474,629 - HGI48_RS02175 0.30 +1.6
474,672 - HGI48_RS02175 0.36 -0.1
474,699 - HGI48_RS02175 0.41 +0.4
474,714 - HGI48_RS02175 0.43 +0.4
474,714 - HGI48_RS02175 0.43 -2.8

Or see this region's nucleotide sequence