Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS01640 and HGI48_RS01645 overlap by 4 nucleotides HGI48_RS01645 and HGI48_RS01650 are separated by 205 nucleotides HGI48_RS01650 and HGI48_RS01655 overlap by 1 nucleotides HGI48_RS01655 and HGI48_RS01660 are separated by 186 nucleotides
HGI48_RS01640: HGI48_RS01640 - ADP-ribose diphosphatase, at 362,178 to 362,819
_RS01640
HGI48_RS01645: HGI48_RS01645 - DUF1249 family protein, at 362,816 to 363,241
_RS01645
HGI48_RS01650: HGI48_RS01650 - 3',5'-cyclic-AMP phosphodiesterase, at 363,447 to 364,274
_RS01650
HGI48_RS01655: HGI48_RS01655 - esterase YqiA, at 364,274 to 364,855
_RS01655
HGI48_RS01660: HGI48_RS01660 - DNA topoisomerase IV subunit B, at 365,042 to 366,937
_RS01660
Position (kb) 363
364
365 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 362.572 kb on - strand, within HGI48_RS01640 at 362.648 kb on + strand, within HGI48_RS01640 at 362.686 kb on + strand, within HGI48_RS01640 at 362.712 kb on + strand, within HGI48_RS01640 at 362.712 kb on + strand at 362.712 kb on + strand, within HGI48_RS01640 at 362.712 kb on + strand, within HGI48_RS01640 at 362.735 kb on + strand, within HGI48_RS01640 at 362.736 kb on - strand, within HGI48_RS01640 at 362.795 kb on - strand at 362.795 kb on - strand at 362.828 kb on + strand at 362.829 kb on - strand at 362.829 kb on - strand at 362.830 kb on + strand at 362.831 kb on - strand at 362.831 kb on - strand at 362.831 kb on - strand at 362.930 kb on - strand, within HGI48_RS01645 at 362.931 kb on - strand, within HGI48_RS01645 at 362.952 kb on - strand, within HGI48_RS01645 at 362.974 kb on + strand, within HGI48_RS01645 at 362.982 kb on - strand, within HGI48_RS01645 at 362.984 kb on - strand at 362.984 kb on - strand, within HGI48_RS01645 at 363.027 kb on - strand, within HGI48_RS01645 at 363.059 kb on + strand, within HGI48_RS01645 at 363.059 kb on + strand, within HGI48_RS01645 at 363.059 kb on + strand, within HGI48_RS01645 at 363.059 kb on + strand, within HGI48_RS01645 at 363.059 kb on + strand, within HGI48_RS01645 at 363.060 kb on - strand, within HGI48_RS01645 at 363.060 kb on - strand at 363.060 kb on - strand, within HGI48_RS01645 at 363.060 kb on - strand, within HGI48_RS01645 at 363.062 kb on + strand, within HGI48_RS01645 at 363.062 kb on + strand, within HGI48_RS01645 at 363.062 kb on + strand, within HGI48_RS01645 at 363.063 kb on - strand, within HGI48_RS01645 at 363.063 kb on - strand, within HGI48_RS01645 at 363.112 kb on + strand, within HGI48_RS01645 at 363.123 kb on - strand, within HGI48_RS01645 at 363.145 kb on - strand, within HGI48_RS01645 at 363.201 kb on - strand at 363.201 kb on - strand at 363.213 kb on - strand at 363.213 kb on - strand at 363.213 kb on - strand at 363.213 kb on - strand at 363.213 kb on - strand at 363.213 kb on - strand at 363.239 kb on + strand at 363.239 kb on + strand at 363.239 kb on + strand at 363.240 kb on - strand at 363.240 kb on - strand at 363.240 kb on - strand at 363.240 kb on - strand at 363.243 kb on + strand at 363.243 kb on + strand at 363.243 kb on + strand at 363.243 kb on + strand at 363.243 kb on + strand at 363.244 kb on - strand at 363.244 kb on - strand at 363.244 kb on - strand at 363.244 kb on - strand at 363.244 kb on - strand at 363.244 kb on - strand at 363.244 kb on - strand at 363.244 kb on - strand at 363.244 kb on - strand at 363.244 kb on - strand at 363.245 kb on + strand at 363.246 kb on - strand at 363.246 kb on - strand at 363.254 kb on + strand at 363.255 kb on - strand at 363.255 kb on - strand at 363.255 kb on - strand at 363.255 kb on - strand at 363.331 kb on + strand at 363.332 kb on - strand at 363.391 kb on + strand at 363.395 kb on + strand at 363.396 kb on - strand at 363.396 kb on - strand at 363.396 kb on - strand at 363.402 kb on - strand at 363.403 kb on + strand at 363.403 kb on + strand at 363.404 kb on - strand at 363.404 kb on - strand at 363.404 kb on - strand at 363.404 kb on - strand at 363.404 kb on - strand at 363.404 kb on - strand at 363.444 kb on + strand at 363.499 kb on + strand at 363.505 kb on + strand at 363.506 kb on - strand at 363.557 kb on + strand, within HGI48_RS01650 at 363.557 kb on + strand, within HGI48_RS01650 at 363.557 kb on + strand, within HGI48_RS01650 at 363.557 kb on + strand, within HGI48_RS01650 at 363.557 kb on + strand, within HGI48_RS01650 at 363.558 kb on - strand, within HGI48_RS01650 at 363.558 kb on - strand, within HGI48_RS01650 at 363.561 kb on + strand, within HGI48_RS01650 at 363.561 kb on + strand, within HGI48_RS01650 at 363.561 kb on + strand, within HGI48_RS01650 at 363.561 kb on + strand, within HGI48_RS01650 at 363.562 kb on - strand, within HGI48_RS01650 at 363.562 kb on - strand, within HGI48_RS01650 at 363.570 kb on + strand, within HGI48_RS01650 at 363.571 kb on - strand, within HGI48_RS01650 at 363.653 kb on + strand, within HGI48_RS01650 at 363.653 kb on + strand, within HGI48_RS01650 at 363.654 kb on - strand at 363.654 kb on - strand, within HGI48_RS01650 at 363.654 kb on - strand, within HGI48_RS01650 at 363.666 kb on + strand, within HGI48_RS01650 at 363.666 kb on + strand at 363.666 kb on + strand, within HGI48_RS01650 at 363.666 kb on + strand, within HGI48_RS01650 at 363.666 kb on + strand, within HGI48_RS01650 at 363.666 kb on + strand, within HGI48_RS01650 at 363.667 kb on - strand, within HGI48_RS01650 at 363.667 kb on - strand, within HGI48_RS01650 at 363.667 kb on - strand, within HGI48_RS01650 at 363.667 kb on - strand, within HGI48_RS01650 at 363.667 kb on - strand at 363.667 kb on - strand, within HGI48_RS01650 at 363.667 kb on - strand, within HGI48_RS01650 at 363.687 kb on - strand, within HGI48_RS01650 at 363.687 kb on - strand, within HGI48_RS01650 at 363.870 kb on + strand, within HGI48_RS01650 at 363.871 kb on - strand, within HGI48_RS01650 at 363.920 kb on + strand, within HGI48_RS01650 at 363.962 kb on + strand at 363.962 kb on + strand, within HGI48_RS01650 at 363.962 kb on + strand, within HGI48_RS01650 at 363.963 kb on - strand, within HGI48_RS01650 at 364.056 kb on - strand, within HGI48_RS01650 at 364.056 kb on - strand, within HGI48_RS01650 at 364.158 kb on - strand, within HGI48_RS01650 at 364.158 kb on - strand, within HGI48_RS01650 at 364.158 kb on - strand, within HGI48_RS01650 at 364.158 kb on - strand, within HGI48_RS01650 at 364.158 kb on - strand, within HGI48_RS01650 at 364.221 kb on + strand at 364.221 kb on + strand at 364.253 kb on + strand at 364.254 kb on - strand at 364.254 kb on - strand at 364.254 kb on - strand at 364.254 kb on - strand at 364.254 kb on - strand at 364.254 kb on - strand at 364.270 kb on - strand at 364.289 kb on + strand at 364.290 kb on - strand at 364.290 kb on - strand at 364.493 kb on + strand, within HGI48_RS01655 at 364.493 kb on + strand, within HGI48_RS01655 at 364.559 kb on + strand, within HGI48_RS01655 at 364.559 kb on + strand, within HGI48_RS01655 at 364.560 kb on - strand, within HGI48_RS01655 at 364.560 kb on - strand, within HGI48_RS01655 at 364.602 kb on - strand, within HGI48_RS01655 at 364.616 kb on + strand, within HGI48_RS01655 at 364.617 kb on - strand, within HGI48_RS01655 at 364.617 kb on - strand, within HGI48_RS01655 at 364.617 kb on - strand, within HGI48_RS01655 at 364.617 kb on - strand, within HGI48_RS01655 at 364.617 kb on - strand, within HGI48_RS01655 at 364.617 kb on - strand, within HGI48_RS01655 at 364.617 kb on - strand, within HGI48_RS01655 at 364.623 kb on + strand, within HGI48_RS01655 at 364.623 kb on + strand, within HGI48_RS01655 at 364.623 kb on + strand, within HGI48_RS01655 at 364.640 kb on + strand, within HGI48_RS01655 at 364.641 kb on - strand at 364.641 kb on - strand, within HGI48_RS01655 at 364.746 kb on - strand at 364.748 kb on + strand, within HGI48_RS01655 at 364.748 kb on + strand, within HGI48_RS01655 at 364.749 kb on - strand, within HGI48_RS01655 at 364.749 kb on - strand, within HGI48_RS01655 at 364.784 kb on - strand, within HGI48_RS01655 at 364.811 kb on + strand at 364.811 kb on + strand at 364.811 kb on + strand at 364.811 kb on + strand at 364.811 kb on + strand at 364.812 kb on - strand at 364.812 kb on - strand at 364.812 kb on - strand at 364.812 kb on - strand at 364.957 kb on - strand at 364.988 kb on + strand at 364.988 kb on + strand at 364.988 kb on + strand at 364.988 kb on + strand at 364.988 kb on + strand at 364.988 kb on + strand at 364.988 kb on + strand at 364.989 kb on - strand at 364.989 kb on - strand at 364.989 kb on - strand at 364.990 kb on + strand at 364.990 kb on + strand at 364.990 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 362,572 - HGI48_RS01640 0.61 +1.1 362,648 + HGI48_RS01640 0.73 +1.7 362,686 + HGI48_RS01640 0.79 +1.7 362,712 + HGI48_RS01640 0.83 +0.6 362,712 + +2.1 362,712 + HGI48_RS01640 0.83 +1.4 362,712 + HGI48_RS01640 0.83 -2.5 362,735 + HGI48_RS01640 0.87 -1.3 362,736 - HGI48_RS01640 0.87 -0.3 362,795 - -0.8 362,795 - -1.9 362,828 + +1.9 362,829 - -0.1 362,829 - -0.9 362,830 + +0.5 362,831 - -0.3 362,831 - -0.0 362,831 - +0.5 362,930 - HGI48_RS01645 0.27 +0.1 362,931 - HGI48_RS01645 0.27 -1.6 362,952 - HGI48_RS01645 0.32 +0.3 362,974 + HGI48_RS01645 0.37 +0.3 362,982 - HGI48_RS01645 0.39 -1.9 362,984 - -0.3 362,984 - HGI48_RS01645 0.39 -0.4 363,027 - HGI48_RS01645 0.50 -0.3 363,059 + HGI48_RS01645 0.57 -0.7 363,059 + HGI48_RS01645 0.57 -0.6 363,059 + HGI48_RS01645 0.57 +0.6 363,059 + HGI48_RS01645 0.57 +1.6 363,059 + HGI48_RS01645 0.57 -0.0 363,060 - HGI48_RS01645 0.57 -1.3 363,060 - -0.9 363,060 - HGI48_RS01645 0.57 +0.1 363,060 - HGI48_RS01645 0.57 +1.4 363,062 + HGI48_RS01645 0.58 +0.7 363,062 + HGI48_RS01645 0.58 +1.7 363,062 + HGI48_RS01645 0.58 -0.8 363,063 - HGI48_RS01645 0.58 -0.5 363,063 - HGI48_RS01645 0.58 -1.6 363,112 + HGI48_RS01645 0.69 -0.3 363,123 - HGI48_RS01645 0.72 +0.1 363,145 - HGI48_RS01645 0.77 -0.7 363,201 - -1.6 363,201 - -0.9 363,213 - -1.8 363,213 - -0.0 363,213 - -1.3 363,213 - -2.6 363,213 - -0.9 363,213 - -2.5 363,239 + +0.7 363,239 + -0.0 363,239 + -1.3 363,240 - -2.0 363,240 - -0.3 363,240 - +1.1 363,240 - -1.9 363,243 + +1.2 363,243 + +0.7 363,243 + +1.4 363,243 + +0.7 363,243 + -0.3 363,244 - +0.1 363,244 - -0.9 363,244 - -1.6 363,244 - -0.9 363,244 - -2.5 363,244 - -0.0 363,244 - -0.9 363,244 - -0.3 363,244 - -1.4 363,244 - -1.0 363,245 + -0.3 363,246 - -2.3 363,246 - +0.5 363,254 + +1.2 363,255 - -1.3 363,255 - -1.9 363,255 - -3.5 363,255 - -0.0 363,331 + -1.6 363,332 - -0.5 363,391 + -0.6 363,395 + +0.9 363,396 - -1.9 363,396 - +0.4 363,396 - +0.1 363,402 - -0.8 363,403 + -1.0 363,403 + -1.1 363,404 - -2.5 363,404 - -1.6 363,404 - -0.8 363,404 - -1.2 363,404 - -0.9 363,404 - -1.2 363,444 + -1.9 363,499 + -2.9 363,505 + -1.3 363,506 - -3.1 363,557 + HGI48_RS01650 0.13 -1.0 363,557 + HGI48_RS01650 0.13 -2.2 363,557 + HGI48_RS01650 0.13 -1.4 363,557 + HGI48_RS01650 0.13 -1.8 363,557 + HGI48_RS01650 0.13 +0.2 363,558 - HGI48_RS01650 0.13 -1.9 363,558 - HGI48_RS01650 0.13 +0.7 363,561 + HGI48_RS01650 0.14 +0.3 363,561 + HGI48_RS01650 0.14 -1.0 363,561 + HGI48_RS01650 0.14 +0.6 363,561 + HGI48_RS01650 0.14 -0.6 363,562 - HGI48_RS01650 0.14 -1.2 363,562 - HGI48_RS01650 0.14 -1.9 363,570 + HGI48_RS01650 0.15 -2.4 363,571 - HGI48_RS01650 0.15 -1.2 363,653 + HGI48_RS01650 0.25 -1.3 363,653 + HGI48_RS01650 0.25 +0.5 363,654 - -0.9 363,654 - HGI48_RS01650 0.25 -1.8 363,654 - HGI48_RS01650 0.25 +0.5 363,666 + HGI48_RS01650 0.26 -1.3 363,666 + -0.9 363,666 + HGI48_RS01650 0.26 +0.2 363,666 + HGI48_RS01650 0.26 -0.7 363,666 + HGI48_RS01650 0.26 -0.6 363,666 + HGI48_RS01650 0.26 -1.5 363,667 - HGI48_RS01650 0.27 -1.5 363,667 - HGI48_RS01650 0.27 -2.1 363,667 - HGI48_RS01650 0.27 -2.1 363,667 - HGI48_RS01650 0.27 -1.3 363,667 - +1.7 363,667 - HGI48_RS01650 0.27 -1.8 363,667 - HGI48_RS01650 0.27 -1.4 363,687 - HGI48_RS01650 0.29 +0.1 363,687 - HGI48_RS01650 0.29 -1.9 363,870 + HGI48_RS01650 0.51 -0.1 363,871 - HGI48_RS01650 0.51 -1.2 363,920 + HGI48_RS01650 0.57 -3.1 363,962 + -0.9 363,962 + HGI48_RS01650 0.62 +1.2 363,962 + HGI48_RS01650 0.62 +0.0 363,963 - HGI48_RS01650 0.62 -0.9 364,056 - HGI48_RS01650 0.74 -2.1 364,056 - HGI48_RS01650 0.74 +0.3 364,158 - HGI48_RS01650 0.86 +0.1 364,158 - HGI48_RS01650 0.86 -1.6 364,158 - HGI48_RS01650 0.86 +0.7 364,158 - HGI48_RS01650 0.86 -0.7 364,158 - HGI48_RS01650 0.86 -0.3 364,221 + -1.6 364,221 + -3.1 364,253 + +0.2 364,254 - -1.9 364,254 - -0.7 364,254 - -1.3 364,254 - -1.6 364,254 - -3.2 364,254 - +1.4 364,270 - +0.4 364,289 + -1.1 364,290 - +1.5 364,290 - +0.7 364,493 + HGI48_RS01655 0.38 +1.3 364,493 + HGI48_RS01655 0.38 +1.6 364,559 + HGI48_RS01655 0.49 -0.2 364,559 + HGI48_RS01655 0.49 -0.9 364,560 - HGI48_RS01655 0.49 -1.3 364,560 - HGI48_RS01655 0.49 +0.2 364,602 - HGI48_RS01655 0.56 -1.3 364,616 + HGI48_RS01655 0.59 -1.9 364,617 - HGI48_RS01655 0.59 -1.5 364,617 - HGI48_RS01655 0.59 -0.2 364,617 - HGI48_RS01655 0.59 -0.6 364,617 - HGI48_RS01655 0.59 -0.9 364,617 - HGI48_RS01655 0.59 -0.2 364,617 - HGI48_RS01655 0.59 +0.6 364,617 - HGI48_RS01655 0.59 +0.9 364,623 + HGI48_RS01655 0.60 +0.3 364,623 + HGI48_RS01655 0.60 +0.7 364,623 + HGI48_RS01655 0.60 -0.9 364,640 + HGI48_RS01655 0.63 +0.4 364,641 - +3.0 364,641 - HGI48_RS01655 0.63 -0.0 364,746 - +0.1 364,748 + HGI48_RS01655 0.81 -0.1 364,748 + HGI48_RS01655 0.81 -2.1 364,749 - HGI48_RS01655 0.82 +0.6 364,749 - HGI48_RS01655 0.82 -0.3 364,784 - HGI48_RS01655 0.88 -0.6 364,811 + -0.0 364,811 + -0.6 364,811 + -0.3 364,811 + -0.8 364,811 + +0.1 364,812 - +1.0 364,812 - +0.7 364,812 - -1.9 364,812 - -0.9 364,957 - -0.7 364,988 + +0.7 364,988 + -0.3 364,988 + +0.3 364,988 + +0.5 364,988 + +0.3 364,988 + +1.7 364,988 + -0.9 364,989 - -1.6 364,989 - -1.9 364,989 - -2.1 364,990 + -0.0 364,990 + -1.9 364,990 + -0.3
Or see this region's nucleotide sequence