Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS01570 and HGI48_RS01575 are separated by 235 nucleotides HGI48_RS01575 and HGI48_RS01580 overlap by 4 nucleotides HGI48_RS01580 and HGI48_RS01585 are separated by 93 nucleotides
HGI48_RS01570: HGI48_RS01570 - aerobic respiration two-component sensor histidine kinase ArcB, at 346,641 to 348,980
_RS01570
HGI48_RS01575: HGI48_RS01575 - isoprenoid biosynthesis glyoxalase ElbB, at 349,216 to 349,869
_RS01575
HGI48_RS01580: HGI48_RS01580 - monofunctional biosynthetic peptidoglycan transglycosylase, at 349,866 to 350,615
_RS01580
HGI48_RS01585: HGI48_RS01585 - alginate lyase family protein, at 350,709 to 352,010
_RS01585
Position (kb) 349
350 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 348.329 kb on + strand, within HGI48_RS01570 at 348.368 kb on + strand, within HGI48_RS01570 at 348.423 kb on + strand at 348.469 kb on + strand, within HGI48_RS01570 at 348.489 kb on + strand at 348.489 kb on + strand at 348.490 kb on - strand at 348.521 kb on + strand, within HGI48_RS01570 at 348.564 kb on + strand, within HGI48_RS01570 at 348.660 kb on + strand, within HGI48_RS01570 at 348.729 kb on + strand, within HGI48_RS01570 at 348.892 kb on + strand at 348.892 kb on + strand at 348.892 kb on + strand at 348.892 kb on + strand at 348.893 kb on - strand at 349.008 kb on + strand at 349.008 kb on + strand at 349.008 kb on + strand at 349.009 kb on - strand at 349.009 kb on - strand at 349.009 kb on - strand at 349.009 kb on - strand at 349.009 kb on - strand at 349.033 kb on + strand at 349.033 kb on + strand at 349.033 kb on + strand at 349.033 kb on + strand at 349.033 kb on + strand at 349.033 kb on + strand at 349.033 kb on + strand at 349.033 kb on + strand at 349.033 kb on + strand at 349.034 kb on - strand at 349.034 kb on - strand at 349.034 kb on - strand at 349.034 kb on - strand at 349.034 kb on - strand at 349.034 kb on - strand at 349.034 kb on - strand at 349.034 kb on - strand at 349.034 kb on - strand at 349.034 kb on - strand at 349.034 kb on - strand at 349.058 kb on + strand at 349.058 kb on + strand at 349.058 kb on + strand at 349.058 kb on + strand at 349.059 kb on - strand at 349.059 kb on - strand at 349.064 kb on + strand at 349.078 kb on + strand at 349.079 kb on - strand at 349.107 kb on + strand at 349.108 kb on - strand at 349.108 kb on - strand at 349.114 kb on + strand at 349.114 kb on + strand at 349.115 kb on - strand at 349.115 kb on - strand at 349.115 kb on - strand at 349.115 kb on - strand at 349.115 kb on - strand at 349.115 kb on - strand at 349.115 kb on - strand at 349.115 kb on - strand at 349.129 kb on + strand at 349.155 kb on + strand at 349.155 kb on + strand at 349.155 kb on + strand at 349.155 kb on + strand at 349.155 kb on + strand at 349.155 kb on + strand at 349.155 kb on + strand at 349.155 kb on + strand at 349.156 kb on - strand at 349.156 kb on - strand at 349.156 kb on - strand at 349.161 kb on - strand at 349.195 kb on + strand at 349.210 kb on + strand at 349.210 kb on + strand at 349.210 kb on + strand at 349.210 kb on + strand at 349.210 kb on + strand at 349.211 kb on - strand at 349.211 kb on - strand at 349.255 kb on + strand at 349.256 kb on - strand at 349.256 kb on - strand at 349.362 kb on + strand, within HGI48_RS01575 at 349.576 kb on - strand, within HGI48_RS01575 at 349.576 kb on - strand, within HGI48_RS01575 at 349.632 kb on + strand, within HGI48_RS01575 at 349.632 kb on + strand, within HGI48_RS01575 at 349.632 kb on + strand, within HGI48_RS01575 at 349.632 kb on + strand, within HGI48_RS01575 at 349.632 kb on + strand, within HGI48_RS01575 at 349.633 kb on - strand, within HGI48_RS01575 at 349.633 kb on - strand, within HGI48_RS01575 at 349.633 kb on - strand, within HGI48_RS01575 at 349.653 kb on + strand, within HGI48_RS01575 at 349.661 kb on + strand, within HGI48_RS01575 at 349.661 kb on + strand, within HGI48_RS01575 at 349.668 kb on + strand, within HGI48_RS01575 at 349.669 kb on - strand, within HGI48_RS01575 at 349.669 kb on - strand, within HGI48_RS01575 at 349.669 kb on - strand, within HGI48_RS01575 at 349.669 kb on - strand, within HGI48_RS01575 at 349.669 kb on - strand, within HGI48_RS01575 at 349.669 kb on - strand, within HGI48_RS01575 at 349.678 kb on - strand, within HGI48_RS01575 at 349.721 kb on + strand at 349.721 kb on + strand, within HGI48_RS01575 at 349.721 kb on + strand, within HGI48_RS01575 at 349.722 kb on - strand, within HGI48_RS01575 at 349.739 kb on + strand at 349.740 kb on - strand, within HGI48_RS01575 at 349.789 kb on + strand, within HGI48_RS01575 at 349.789 kb on + strand, within HGI48_RS01575 at 349.789 kb on + strand, within HGI48_RS01575 at 349.789 kb on + strand, within HGI48_RS01575 at 349.789 kb on + strand, within HGI48_RS01575 at 349.789 kb on + strand, within HGI48_RS01575 at 349.790 kb on - strand, within HGI48_RS01575 at 350.047 kb on + strand, within HGI48_RS01580 at 350.047 kb on + strand, within HGI48_RS01580 at 350.048 kb on - strand, within HGI48_RS01580 at 350.048 kb on - strand, within HGI48_RS01580 at 350.064 kb on + strand, within HGI48_RS01580 at 350.064 kb on + strand, within HGI48_RS01580 at 350.064 kb on + strand, within HGI48_RS01580 at 350.064 kb on + strand, within HGI48_RS01580 at 350.064 kb on + strand, within HGI48_RS01580 at 350.064 kb on + strand, within HGI48_RS01580 at 350.065 kb on - strand, within HGI48_RS01580 at 350.065 kb on - strand, within HGI48_RS01580 at 350.065 kb on - strand, within HGI48_RS01580 at 350.065 kb on - strand, within HGI48_RS01580 at 350.065 kb on - strand, within HGI48_RS01580 at 350.065 kb on - strand, within HGI48_RS01580 at 350.195 kb on + strand, within HGI48_RS01580 at 350.195 kb on + strand, within HGI48_RS01580 at 350.196 kb on - strand, within HGI48_RS01580 at 350.196 kb on - strand at 350.201 kb on + strand, within HGI48_RS01580 at 350.201 kb on + strand, within HGI48_RS01580 at 350.202 kb on - strand, within HGI48_RS01580 at 350.202 kb on - strand, within HGI48_RS01580 at 350.355 kb on - strand, within HGI48_RS01580 at 350.375 kb on + strand at 350.376 kb on - strand, within HGI48_RS01580 at 350.407 kb on + strand, within HGI48_RS01580 at 350.407 kb on + strand, within HGI48_RS01580 at 350.407 kb on + strand, within HGI48_RS01580 at 350.408 kb on - strand, within HGI48_RS01580 at 350.408 kb on - strand, within HGI48_RS01580 at 350.408 kb on - strand, within HGI48_RS01580 at 350.435 kb on + strand at 350.436 kb on - strand, within HGI48_RS01580 at 350.436 kb on - strand, within HGI48_RS01580 at 350.499 kb on - strand, within HGI48_RS01580 at 350.529 kb on + strand, within HGI48_RS01580 at 350.530 kb on - strand at 350.610 kb on + strand at 350.633 kb on + strand at 350.634 kb on - strand at 350.634 kb on - strand at 350.707 kb on + strand at 350.707 kb on + strand at 350.707 kb on + strand at 350.707 kb on + strand at 350.707 kb on + strand at 350.707 kb on + strand at 350.707 kb on + strand at 350.707 kb on + strand at 350.707 kb on + strand at 350.708 kb on - strand at 350.708 kb on - strand at 350.708 kb on - strand at 350.708 kb on - strand at 350.708 kb on - strand at 350.708 kb on - strand at 350.708 kb on - strand at 350.708 kb on - strand at 350.802 kb on + strand at 350.802 kb on + strand at 350.802 kb on + strand at 350.802 kb on + strand at 350.803 kb on - strand at 350.803 kb on - strand at 350.806 kb on + strand at 350.806 kb on + strand at 350.806 kb on + strand at 350.806 kb on + strand at 350.806 kb on + strand at 350.812 kb on + strand at 350.837 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 348,329 + HGI48_RS01570 0.72 +0.4 348,368 + HGI48_RS01570 0.74 +2.2 348,423 + +0.1 348,469 + HGI48_RS01570 0.78 -1.6 348,489 + -0.3 348,489 + +1.1 348,490 - -0.9 348,521 + HGI48_RS01570 0.80 -1.6 348,564 + HGI48_RS01570 0.82 +1.7 348,660 + HGI48_RS01570 0.86 -0.9 348,729 + HGI48_RS01570 0.89 -1.6 348,892 + +0.1 348,892 + -1.6 348,892 + +0.9 348,892 + +0.9 348,893 - -1.3 349,008 + +1.0 349,008 + +0.8 349,008 + +1.4 349,009 - +1.1 349,009 - -0.6 349,009 - +0.8 349,009 - +1.6 349,009 - +1.1 349,033 + -0.3 349,033 + +0.8 349,033 + -1.3 349,033 + +0.0 349,033 + +0.3 349,033 + +0.9 349,033 + +0.3 349,033 + +1.3 349,033 + +0.9 349,034 - +1.8 349,034 - +2.2 349,034 - -0.5 349,034 - +0.3 349,034 - +3.1 349,034 - -1.3 349,034 - +1.9 349,034 - +2.7 349,034 - -0.6 349,034 - -0.0 349,034 - +2.0 349,058 + +1.4 349,058 + +1.4 349,058 + +0.0 349,058 + +0.7 349,059 - +0.2 349,059 - +1.6 349,064 + +1.1 349,078 + -0.6 349,079 - +1.5 349,107 + +1.8 349,108 - +1.3 349,108 - +1.2 349,114 + +2.4 349,114 + +1.3 349,115 - -0.3 349,115 - -0.2 349,115 - -0.6 349,115 - -1.6 349,115 - -0.1 349,115 - -0.4 349,115 - +1.9 349,115 - +0.6 349,129 + +0.7 349,155 + +0.4 349,155 + +1.9 349,155 + +1.2 349,155 + +1.4 349,155 + +1.0 349,155 + +1.2 349,155 + +2.8 349,155 + -1.1 349,156 - +0.1 349,156 - -1.6 349,156 - -1.9 349,161 - -0.5 349,195 + +0.0 349,210 + -0.1 349,210 + +0.2 349,210 + +0.3 349,210 + -0.2 349,210 + -2.9 349,211 - -0.0 349,211 - -0.3 349,255 + +0.4 349,256 - -1.9 349,256 - -0.3 349,362 + HGI48_RS01575 0.22 -1.6 349,576 - HGI48_RS01575 0.55 -1.3 349,576 - HGI48_RS01575 0.55 -1.1 349,632 + HGI48_RS01575 0.64 +1.4 349,632 + HGI48_RS01575 0.64 +1.3 349,632 + HGI48_RS01575 0.64 -1.6 349,632 + HGI48_RS01575 0.64 +0.7 349,632 + HGI48_RS01575 0.64 -1.9 349,633 - HGI48_RS01575 0.64 -1.3 349,633 - HGI48_RS01575 0.64 -0.5 349,633 - HGI48_RS01575 0.64 -1.6 349,653 + HGI48_RS01575 0.67 +0.0 349,661 + HGI48_RS01575 0.68 +0.4 349,661 + HGI48_RS01575 0.68 -0.3 349,668 + HGI48_RS01575 0.69 +0.4 349,669 - HGI48_RS01575 0.69 +1.0 349,669 - HGI48_RS01575 0.69 -0.7 349,669 - HGI48_RS01575 0.69 +0.2 349,669 - HGI48_RS01575 0.69 -0.5 349,669 - HGI48_RS01575 0.69 -1.3 349,669 - HGI48_RS01575 0.69 -2.5 349,678 - HGI48_RS01575 0.71 -0.6 349,721 + +2.1 349,721 + HGI48_RS01575 0.77 +1.0 349,721 + HGI48_RS01575 0.77 +0.1 349,722 - HGI48_RS01575 0.77 -0.1 349,739 + -0.3 349,740 - HGI48_RS01575 0.80 -1.6 349,789 + HGI48_RS01575 0.88 +0.3 349,789 + HGI48_RS01575 0.88 -0.9 349,789 + HGI48_RS01575 0.88 -1.3 349,789 + HGI48_RS01575 0.88 +0.4 349,789 + HGI48_RS01575 0.88 -1.1 349,789 + HGI48_RS01575 0.88 -0.5 349,790 - HGI48_RS01575 0.88 -0.1 350,047 + HGI48_RS01580 0.24 -1.6 350,047 + HGI48_RS01580 0.24 -2.2 350,048 - HGI48_RS01580 0.24 +0.9 350,048 - HGI48_RS01580 0.24 -1.2 350,064 + HGI48_RS01580 0.26 +1.2 350,064 + HGI48_RS01580 0.26 -0.0 350,064 + HGI48_RS01580 0.26 +1.4 350,064 + HGI48_RS01580 0.26 -0.3 350,064 + HGI48_RS01580 0.26 +1.7 350,064 + HGI48_RS01580 0.26 -0.3 350,065 - HGI48_RS01580 0.27 -0.9 350,065 - HGI48_RS01580 0.27 +0.7 350,065 - HGI48_RS01580 0.27 -1.8 350,065 - HGI48_RS01580 0.27 -0.6 350,065 - HGI48_RS01580 0.27 +1.7 350,065 - HGI48_RS01580 0.27 -1.3 350,195 + HGI48_RS01580 0.44 +0.7 350,195 + HGI48_RS01580 0.44 +0.9 350,196 - HGI48_RS01580 0.44 -1.6 350,196 - +1.4 350,201 + HGI48_RS01580 0.45 -1.0 350,201 + HGI48_RS01580 0.45 +0.1 350,202 - HGI48_RS01580 0.45 +0.5 350,202 - HGI48_RS01580 0.45 +1.2 350,355 - HGI48_RS01580 0.65 +0.3 350,375 + -0.3 350,376 - HGI48_RS01580 0.68 -1.9 350,407 + HGI48_RS01580 0.72 -1.9 350,407 + HGI48_RS01580 0.72 +0.7 350,407 + HGI48_RS01580 0.72 -0.7 350,408 - HGI48_RS01580 0.72 -1.6 350,408 - HGI48_RS01580 0.72 -0.6 350,408 - HGI48_RS01580 0.72 -0.9 350,435 + +0.7 350,436 - HGI48_RS01580 0.76 -0.6 350,436 - HGI48_RS01580 0.76 -1.5 350,499 - HGI48_RS01580 0.84 -0.5 350,529 + HGI48_RS01580 0.88 -1.1 350,530 - +1.4 350,610 + -1.3 350,633 + -0.4 350,634 - -0.1 350,634 - +0.7 350,707 + -0.0 350,707 + +0.7 350,707 + -0.3 350,707 + +0.2 350,707 + -1.2 350,707 + +0.5 350,707 + +0.4 350,707 + +0.3 350,707 + -0.9 350,708 - -1.0 350,708 - +0.1 350,708 - -0.4 350,708 - -2.2 350,708 - -0.4 350,708 - +0.0 350,708 - +0.2 350,708 - -0.3 350,802 + -1.3 350,802 + -1.6 350,802 + -1.6 350,802 + -0.4 350,803 - +0.2 350,803 - +0.5 350,806 + -0.3 350,806 + -0.0 350,806 + +0.5 350,806 + +1.3 350,806 + +0.3 350,812 + +0.3 350,837 - -1.1
Or see this region's nucleotide sequence