Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS01510 and HGI48_RS01515 are separated by 54 nucleotides HGI48_RS01515 and HGI48_RS01520 are separated by 87 nucleotides
HGI48_RS01510: HGI48_RS01510 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 330,511 to 331,773
_RS01510
HGI48_RS01515: HGI48_RS01515 - outer membrane-stress sensor serine endopeptidase DegS, at 331,828 to 332,889
_RS01515
HGI48_RS01520: HGI48_RS01520 - serine endoprotease DegQ, at 332,977 to 334,347
_RS01520
Position (kb) 331
332
333 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 331.797 kb on - strand at 331.842 kb on - strand at 331.851 kb on + strand at 331.851 kb on + strand at 331.852 kb on - strand at 331.857 kb on + strand at 331.867 kb on + strand at 331.868 kb on - strand at 331.868 kb on - strand at 331.868 kb on - strand at 331.868 kb on - strand at 331.868 kb on - strand at 331.878 kb on + strand at 331.879 kb on - strand at 331.946 kb on - strand, within HGI48_RS01515 at 332.010 kb on + strand, within HGI48_RS01515 at 332.056 kb on + strand, within HGI48_RS01515 at 332.057 kb on - strand at 332.118 kb on + strand, within HGI48_RS01515 at 332.119 kb on - strand, within HGI48_RS01515 at 332.120 kb on + strand, within HGI48_RS01515 at 332.120 kb on + strand, within HGI48_RS01515 at 332.120 kb on + strand, within HGI48_RS01515 at 332.121 kb on - strand, within HGI48_RS01515 at 332.121 kb on - strand, within HGI48_RS01515 at 332.121 kb on - strand, within HGI48_RS01515 at 332.121 kb on - strand, within HGI48_RS01515 at 332.121 kb on - strand, within HGI48_RS01515 at 332.161 kb on + strand, within HGI48_RS01515 at 332.161 kb on + strand, within HGI48_RS01515 at 332.161 kb on + strand, within HGI48_RS01515 at 332.161 kb on + strand, within HGI48_RS01515 at 332.161 kb on + strand, within HGI48_RS01515 at 332.162 kb on - strand, within HGI48_RS01515 at 332.162 kb on - strand, within HGI48_RS01515 at 332.162 kb on - strand, within HGI48_RS01515 at 332.162 kb on - strand, within HGI48_RS01515 at 332.162 kb on - strand, within HGI48_RS01515 at 332.229 kb on + strand, within HGI48_RS01515 at 332.408 kb on + strand, within HGI48_RS01515 at 332.408 kb on + strand, within HGI48_RS01515 at 332.408 kb on + strand, within HGI48_RS01515 at 332.408 kb on + strand, within HGI48_RS01515 at 332.503 kb on + strand, within HGI48_RS01515 at 332.503 kb on + strand, within HGI48_RS01515 at 332.533 kb on + strand, within HGI48_RS01515 at 332.534 kb on - strand, within HGI48_RS01515 at 332.607 kb on + strand, within HGI48_RS01515 at 332.608 kb on - strand, within HGI48_RS01515 at 332.608 kb on - strand, within HGI48_RS01515 at 332.621 kb on + strand, within HGI48_RS01515 at 332.621 kb on + strand, within HGI48_RS01515 at 332.621 kb on + strand, within HGI48_RS01515 at 332.622 kb on - strand, within HGI48_RS01515 at 332.622 kb on - strand, within HGI48_RS01515 at 332.622 kb on - strand at 332.622 kb on - strand, within HGI48_RS01515 at 332.622 kb on - strand, within HGI48_RS01515 at 332.631 kb on + strand, within HGI48_RS01515 at 332.632 kb on - strand, within HGI48_RS01515 at 332.705 kb on + strand, within HGI48_RS01515 at 332.705 kb on + strand, within HGI48_RS01515 at 332.705 kb on + strand, within HGI48_RS01515 at 332.706 kb on - strand, within HGI48_RS01515 at 332.706 kb on - strand, within HGI48_RS01515 at 332.707 kb on + strand, within HGI48_RS01515 at 332.707 kb on + strand, within HGI48_RS01515 at 332.707 kb on + strand, within HGI48_RS01515 at 332.707 kb on + strand, within HGI48_RS01515 at 332.707 kb on + strand at 332.707 kb on + strand, within HGI48_RS01515 at 332.707 kb on + strand, within HGI48_RS01515 at 332.708 kb on - strand, within HGI48_RS01515 at 332.708 kb on - strand, within HGI48_RS01515 at 332.708 kb on - strand at 332.737 kb on + strand, within HGI48_RS01515 at 332.747 kb on + strand, within HGI48_RS01515 at 332.748 kb on - strand, within HGI48_RS01515 at 332.750 kb on + strand at 332.750 kb on + strand, within HGI48_RS01515 at 332.750 kb on + strand, within HGI48_RS01515 at 332.751 kb on - strand, within HGI48_RS01515 at 332.805 kb on + strand at 332.813 kb on - strand at 332.813 kb on - strand at 332.872 kb on + strand at 332.872 kb on + strand at 332.905 kb on + strand at 332.905 kb on + strand at 332.906 kb on - strand at 332.906 kb on - strand at 332.928 kb on - strand at 332.928 kb on - strand at 332.993 kb on + strand at 332.993 kb on + strand at 332.993 kb on + strand at 332.994 kb on - strand at 332.994 kb on - strand at 332.994 kb on - strand at 332.994 kb on - strand at 332.994 kb on - strand at 332.997 kb on + strand at 332.997 kb on + strand at 332.997 kb on + strand at 332.997 kb on + strand at 332.997 kb on + strand at 332.998 kb on - strand at 332.998 kb on - strand at 332.998 kb on - strand at 332.998 kb on - strand at 332.998 kb on - strand at 332.998 kb on - strand at 333.105 kb on + strand at 333.105 kb on + strand at 333.106 kb on - strand at 333.106 kb on - strand at 333.106 kb on - strand at 333.177 kb on + strand, within HGI48_RS01520 at 333.178 kb on - strand, within HGI48_RS01520 at 333.180 kb on + strand, within HGI48_RS01520 at 333.181 kb on - strand, within HGI48_RS01520 at 333.181 kb on - strand, within HGI48_RS01520 at 333.181 kb on - strand, within HGI48_RS01520 at 333.318 kb on + strand, within HGI48_RS01520 at 333.319 kb on - strand, within HGI48_RS01520 at 333.322 kb on + strand at 333.322 kb on + strand, within HGI48_RS01520 at 333.323 kb on - strand, within HGI48_RS01520 at 333.349 kb on + strand, within HGI48_RS01520 at 333.394 kb on + strand, within HGI48_RS01520 at 333.453 kb on + strand, within HGI48_RS01520 at 333.453 kb on + strand, within HGI48_RS01520 at 333.454 kb on - strand, within HGI48_RS01520 at 333.487 kb on + strand, within HGI48_RS01520 at 333.597 kb on + strand, within HGI48_RS01520 at 333.598 kb on - strand, within HGI48_RS01520 at 333.631 kb on - strand, within HGI48_RS01520 at 333.709 kb on - strand, within HGI48_RS01520
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 331,797 - +0.3 331,842 - -1.0 331,851 + -2.1 331,851 + -0.3 331,852 - +0.3 331,857 + -1.3 331,867 + +1.1 331,868 - -1.5 331,868 - -1.6 331,868 - -0.9 331,868 - -0.4 331,868 - -2.1 331,878 + -1.3 331,879 - -0.5 331,946 - HGI48_RS01515 0.11 +0.4 332,010 + HGI48_RS01515 0.17 -0.6 332,056 + HGI48_RS01515 0.21 +0.3 332,057 - -0.3 332,118 + HGI48_RS01515 0.27 -2.8 332,119 - HGI48_RS01515 0.27 -0.8 332,120 + HGI48_RS01515 0.27 -0.6 332,120 + HGI48_RS01515 0.27 -0.0 332,120 + HGI48_RS01515 0.27 -2.3 332,121 - HGI48_RS01515 0.28 +0.7 332,121 - HGI48_RS01515 0.28 -1.6 332,121 - HGI48_RS01515 0.28 -0.1 332,121 - HGI48_RS01515 0.28 -1.1 332,121 - HGI48_RS01515 0.28 -3.3 332,161 + HGI48_RS01515 0.31 -1.0 332,161 + HGI48_RS01515 0.31 -1.2 332,161 + HGI48_RS01515 0.31 -3.1 332,161 + HGI48_RS01515 0.31 -2.1 332,161 + HGI48_RS01515 0.31 +1.5 332,162 - HGI48_RS01515 0.31 -1.0 332,162 - HGI48_RS01515 0.31 -1.9 332,162 - HGI48_RS01515 0.31 -0.6 332,162 - HGI48_RS01515 0.31 -1.3 332,162 - HGI48_RS01515 0.31 -1.9 332,229 + HGI48_RS01515 0.38 -1.2 332,408 + HGI48_RS01515 0.55 -1.6 332,408 + HGI48_RS01515 0.55 +0.4 332,408 + HGI48_RS01515 0.55 -1.0 332,408 + HGI48_RS01515 0.55 -1.3 332,503 + HGI48_RS01515 0.64 -2.0 332,503 + HGI48_RS01515 0.64 -1.1 332,533 + HGI48_RS01515 0.66 -0.3 332,534 - HGI48_RS01515 0.66 -1.2 332,607 + HGI48_RS01515 0.73 +1.1 332,608 - HGI48_RS01515 0.73 +0.1 332,608 - HGI48_RS01515 0.73 -0.3 332,621 + HGI48_RS01515 0.75 -0.6 332,621 + HGI48_RS01515 0.75 -2.1 332,621 + HGI48_RS01515 0.75 -1.1 332,622 - HGI48_RS01515 0.75 -2.1 332,622 - HGI48_RS01515 0.75 -1.3 332,622 - -0.9 332,622 - HGI48_RS01515 0.75 -1.9 332,622 - HGI48_RS01515 0.75 +0.3 332,631 + HGI48_RS01515 0.76 -0.0 332,632 - HGI48_RS01515 0.76 -1.1 332,705 + HGI48_RS01515 0.83 -0.3 332,705 + HGI48_RS01515 0.83 -0.7 332,705 + HGI48_RS01515 0.83 -1.5 332,706 - HGI48_RS01515 0.83 -1.1 332,706 - HGI48_RS01515 0.83 -1.9 332,707 + HGI48_RS01515 0.83 -0.3 332,707 + HGI48_RS01515 0.83 +0.4 332,707 + HGI48_RS01515 0.83 -0.9 332,707 + HGI48_RS01515 0.83 -0.9 332,707 + +0.1 332,707 + HGI48_RS01515 0.83 -3.4 332,707 + HGI48_RS01515 0.83 -0.2 332,708 - HGI48_RS01515 0.83 -1.1 332,708 - HGI48_RS01515 0.83 -1.3 332,708 - +0.1 332,737 + HGI48_RS01515 0.86 -1.2 332,747 + HGI48_RS01515 0.87 -0.2 332,748 - HGI48_RS01515 0.87 -1.4 332,750 + -0.9 332,750 + HGI48_RS01515 0.87 -2.5 332,750 + HGI48_RS01515 0.87 -0.0 332,751 - HGI48_RS01515 0.87 -0.9 332,805 + -1.1 332,813 - -1.9 332,813 - +0.7 332,872 + -0.8 332,872 + +0.7 332,905 + +0.2 332,905 + +0.7 332,906 - -1.3 332,906 - +2.1 332,928 - +0.9 332,928 - +0.3 332,993 + +1.5 332,993 + +1.3 332,993 + -1.9 332,994 - -1.3 332,994 - +0.2 332,994 - -0.5 332,994 - +0.1 332,994 - -1.5 332,997 + -1.3 332,997 + -0.6 332,997 + -1.2 332,997 + -1.4 332,997 + -1.3 332,998 - -1.9 332,998 - -2.6 332,998 - +0.1 332,998 - -0.1 332,998 - -1.9 332,998 - -0.9 333,105 + +0.8 333,105 + -1.3 333,106 - +2.3 333,106 - -0.7 333,106 - -0.6 333,177 + HGI48_RS01520 0.15 -0.1 333,178 - HGI48_RS01520 0.15 -0.0 333,180 + HGI48_RS01520 0.15 +0.5 333,181 - HGI48_RS01520 0.15 -2.8 333,181 - HGI48_RS01520 0.15 +1.9 333,181 - HGI48_RS01520 0.15 +0.6 333,318 + HGI48_RS01520 0.25 -1.4 333,319 - HGI48_RS01520 0.25 -0.9 333,322 + -0.9 333,322 + HGI48_RS01520 0.25 +0.6 333,323 - HGI48_RS01520 0.25 -0.5 333,349 + HGI48_RS01520 0.27 -0.4 333,394 + HGI48_RS01520 0.30 -1.6 333,453 + HGI48_RS01520 0.35 -1.3 333,453 + HGI48_RS01520 0.35 +0.5 333,454 - HGI48_RS01520 0.35 -1.9 333,487 + HGI48_RS01520 0.37 -0.6 333,597 + HGI48_RS01520 0.45 +0.4 333,598 - HGI48_RS01520 0.45 -2.0 333,631 - HGI48_RS01520 0.48 -1.0 333,709 - HGI48_RS01520 0.53 +0.2
Or see this region's nucleotide sequence