Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS01280 and HGI48_RS01285 are separated by 245 nucleotides HGI48_RS01285 and HGI48_RS01290 are separated by 194 nucleotides HGI48_RS01290 and HGI48_RS01295 are separated by 23 nucleotides
HGI48_RS01280: HGI48_RS01280 - cupin domain-containing protein, at 286,875 to 287,270
_RS01280
HGI48_RS01285: HGI48_RS01285 - DUF1232 domain-containing protein, at 287,516 to 287,857
_RS01285
HGI48_RS01290: HGI48_RS01290 - DNA-binding transcriptional regulator Fis, at 288,052 to 288,348
_RS01290
HGI48_RS01295: HGI48_RS01295 - tRNA dihydrouridine synthase DusB, at 288,372 to 289,337
_RS01295
Position (kb) 288
289 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 287.268 kb on + strand at 287.268 kb on + strand at 287.295 kb on + strand at 287.295 kb on + strand at 287.295 kb on + strand at 287.295 kb on + strand at 287.295 kb on + strand at 287.296 kb on - strand at 287.296 kb on - strand at 287.296 kb on - strand at 287.315 kb on + strand at 287.315 kb on + strand at 287.315 kb on + strand at 287.315 kb on + strand at 287.316 kb on - strand at 287.316 kb on - strand at 287.316 kb on - strand at 287.316 kb on - strand at 287.387 kb on - strand at 287.390 kb on - strand at 287.390 kb on - strand at 287.400 kb on + strand at 287.469 kb on - strand at 287.474 kb on + strand at 287.475 kb on - strand at 287.475 kb on - strand at 287.478 kb on + strand at 287.479 kb on - strand at 287.501 kb on + strand at 287.502 kb on - strand at 287.502 kb on - strand at 287.502 kb on - strand at 287.512 kb on + strand at 287.512 kb on + strand at 287.513 kb on - strand at 287.513 kb on - strand at 287.545 kb on + strand at 287.546 kb on - strand at 287.559 kb on - strand, within HGI48_RS01285 at 287.574 kb on + strand, within HGI48_RS01285 at 287.574 kb on + strand, within HGI48_RS01285 at 287.574 kb on + strand, within HGI48_RS01285 at 287.575 kb on - strand, within HGI48_RS01285 at 287.575 kb on - strand, within HGI48_RS01285 at 287.575 kb on - strand, within HGI48_RS01285 at 287.583 kb on - strand, within HGI48_RS01285 at 287.623 kb on + strand, within HGI48_RS01285 at 287.623 kb on + strand, within HGI48_RS01285 at 287.625 kb on + strand, within HGI48_RS01285 at 287.625 kb on + strand, within HGI48_RS01285 at 287.626 kb on - strand at 287.626 kb on - strand, within HGI48_RS01285 at 287.666 kb on + strand, within HGI48_RS01285 at 287.667 kb on - strand, within HGI48_RS01285 at 287.676 kb on + strand, within HGI48_RS01285 at 287.676 kb on + strand, within HGI48_RS01285 at 287.676 kb on + strand, within HGI48_RS01285 at 287.677 kb on - strand, within HGI48_RS01285 at 287.677 kb on - strand, within HGI48_RS01285 at 287.682 kb on - strand, within HGI48_RS01285 at 287.691 kb on + strand, within HGI48_RS01285 at 287.691 kb on + strand, within HGI48_RS01285 at 287.691 kb on + strand, within HGI48_RS01285 at 287.691 kb on + strand, within HGI48_RS01285 at 287.691 kb on + strand, within HGI48_RS01285 at 287.691 kb on + strand, within HGI48_RS01285 at 287.691 kb on + strand, within HGI48_RS01285 at 287.691 kb on + strand, within HGI48_RS01285 at 287.691 kb on + strand, within HGI48_RS01285 at 287.692 kb on - strand, within HGI48_RS01285 at 287.692 kb on - strand, within HGI48_RS01285 at 287.692 kb on - strand, within HGI48_RS01285 at 287.692 kb on - strand, within HGI48_RS01285 at 287.692 kb on - strand at 287.692 kb on - strand, within HGI48_RS01285 at 287.692 kb on - strand, within HGI48_RS01285 at 287.692 kb on - strand, within HGI48_RS01285 at 287.692 kb on - strand, within HGI48_RS01285 at 287.692 kb on - strand, within HGI48_RS01285 at 287.693 kb on + strand, within HGI48_RS01285 at 287.693 kb on + strand, within HGI48_RS01285 at 287.693 kb on + strand, within HGI48_RS01285 at 287.693 kb on + strand, within HGI48_RS01285 at 287.693 kb on + strand, within HGI48_RS01285 at 287.693 kb on + strand, within HGI48_RS01285 at 287.693 kb on + strand, within HGI48_RS01285 at 287.693 kb on + strand, within HGI48_RS01285 at 287.693 kb on + strand, within HGI48_RS01285 at 287.693 kb on + strand, within HGI48_RS01285 at 287.693 kb on + strand, within HGI48_RS01285 at 287.693 kb on + strand, within HGI48_RS01285 at 287.693 kb on + strand, within HGI48_RS01285 at 287.693 kb on + strand at 287.693 kb on + strand, within HGI48_RS01285 at 287.693 kb on + strand, within HGI48_RS01285 at 287.693 kb on + strand, within HGI48_RS01285 at 287.693 kb on + strand, within HGI48_RS01285 at 287.693 kb on + strand, within HGI48_RS01285 at 287.694 kb on - strand, within HGI48_RS01285 at 287.694 kb on - strand, within HGI48_RS01285 at 287.694 kb on - strand, within HGI48_RS01285 at 287.694 kb on - strand, within HGI48_RS01285 at 287.694 kb on - strand, within HGI48_RS01285 at 287.694 kb on - strand, within HGI48_RS01285 at 287.694 kb on - strand, within HGI48_RS01285 at 287.694 kb on - strand, within HGI48_RS01285 at 287.694 kb on - strand, within HGI48_RS01285 at 287.694 kb on - strand, within HGI48_RS01285 at 287.694 kb on - strand, within HGI48_RS01285 at 287.695 kb on + strand at 287.695 kb on + strand at 287.695 kb on + strand, within HGI48_RS01285 at 287.695 kb on + strand, within HGI48_RS01285 at 287.695 kb on + strand, within HGI48_RS01285 at 287.696 kb on - strand, within HGI48_RS01285 at 287.696 kb on - strand, within HGI48_RS01285 at 287.696 kb on - strand, within HGI48_RS01285 at 287.696 kb on - strand, within HGI48_RS01285 at 287.699 kb on - strand, within HGI48_RS01285 at 287.699 kb on - strand, within HGI48_RS01285 at 287.744 kb on + strand, within HGI48_RS01285 at 287.750 kb on + strand, within HGI48_RS01285 at 287.750 kb on + strand, within HGI48_RS01285 at 287.751 kb on - strand, within HGI48_RS01285 at 287.751 kb on - strand at 287.790 kb on + strand, within HGI48_RS01285 at 287.790 kb on + strand, within HGI48_RS01285 at 287.790 kb on + strand, within HGI48_RS01285 at 287.795 kb on - strand, within HGI48_RS01285 at 287.815 kb on + strand, within HGI48_RS01285 at 287.861 kb on + strand at 287.861 kb on + strand at 287.862 kb on - strand at 287.868 kb on + strand at 287.869 kb on - strand at 287.877 kb on + strand at 287.877 kb on + strand at 287.877 kb on + strand at 287.878 kb on - strand at 287.891 kb on - strand at 287.896 kb on - strand at 287.917 kb on - strand at 287.920 kb on + strand at 287.922 kb on + strand at 287.923 kb on - strand at 287.963 kb on + strand at 287.963 kb on + strand at 287.963 kb on + strand at 287.963 kb on + strand at 287.963 kb on + strand at 287.963 kb on + strand at 287.964 kb on - strand at 287.964 kb on - strand at 287.964 kb on - strand at 287.968 kb on + strand at 287.968 kb on + strand at 287.969 kb on - strand at 287.973 kb on + strand at 287.973 kb on + strand at 287.973 kb on + strand at 287.973 kb on + strand at 287.973 kb on + strand at 287.974 kb on - strand at 287.974 kb on - strand at 287.974 kb on - strand at 287.974 kb on - strand at 287.974 kb on - strand at 287.974 kb on - strand at 287.974 kb on - strand at 287.974 kb on - strand at 287.974 kb on - strand at 288.103 kb on - strand at 288.143 kb on + strand, within HGI48_RS01290 at 288.143 kb on + strand, within HGI48_RS01290 at 288.175 kb on + strand, within HGI48_RS01290 at 288.175 kb on + strand, within HGI48_RS01290 at 288.301 kb on + strand, within HGI48_RS01290 at 288.320 kb on - strand at 288.320 kb on - strand at 288.320 kb on - strand at 288.348 kb on + strand at 288.391 kb on + strand at 288.429 kb on + strand at 288.498 kb on - strand, within HGI48_RS01295 at 288.529 kb on + strand, within HGI48_RS01295 at 288.530 kb on - strand, within HGI48_RS01295 at 288.550 kb on - strand, within HGI48_RS01295 at 288.552 kb on - strand, within HGI48_RS01295 at 288.552 kb on - strand, within HGI48_RS01295 at 288.552 kb on - strand, within HGI48_RS01295 at 288.620 kb on - strand, within HGI48_RS01295 at 288.620 kb on - strand, within HGI48_RS01295 at 288.670 kb on - strand, within HGI48_RS01295 at 288.670 kb on - strand, within HGI48_RS01295 at 288.694 kb on + strand, within HGI48_RS01295 at 288.729 kb on - strand, within HGI48_RS01295 at 288.770 kb on + strand, within HGI48_RS01295 at 288.770 kb on + strand, within HGI48_RS01295 at 288.771 kb on - strand, within HGI48_RS01295 at 288.771 kb on - strand, within HGI48_RS01295 at 288.790 kb on + strand, within HGI48_RS01295 at 288.790 kb on + strand, within HGI48_RS01295 at 288.791 kb on - strand, within HGI48_RS01295 at 288.852 kb on - strand, within HGI48_RS01295 at 288.891 kb on - strand, within HGI48_RS01295 at 288.891 kb on - strand, within HGI48_RS01295 at 288.891 kb on - strand, within HGI48_RS01295 at 288.891 kb on - strand, within HGI48_RS01295 at 288.891 kb on - strand, within HGI48_RS01295 at 288.892 kb on - strand, within HGI48_RS01295 at 288.943 kb on - strand, within HGI48_RS01295 at 289.162 kb on - strand, within HGI48_RS01295 at 289.162 kb on - strand, within HGI48_RS01295 at 289.162 kb on - strand, within HGI48_RS01295 at 289.162 kb on - strand, within HGI48_RS01295 at 289.162 kb on - strand, within HGI48_RS01295 at 289.162 kb on - strand, within HGI48_RS01295 at 289.162 kb on - strand, within HGI48_RS01295 at 289.162 kb on - strand, within HGI48_RS01295 at 289.162 kb on - strand, within HGI48_RS01295 at 289.162 kb on - strand, within HGI48_RS01295
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 287,268 + -0.4 287,268 + -0.6 287,295 + +0.7 287,295 + -1.0 287,295 + -0.1 287,295 + +1.4 287,295 + +3.7 287,296 - -1.7 287,296 - -0.2 287,296 - -0.1 287,315 + -0.4 287,315 + +0.3 287,315 + +0.1 287,315 + -1.6 287,316 - -0.5 287,316 - -1.9 287,316 - -1.4 287,316 - +0.1 287,387 - +0.7 287,390 - -0.1 287,390 - -0.5 287,400 + -0.9 287,469 - -2.6 287,474 + -1.9 287,475 - -0.3 287,475 - +0.1 287,478 + -0.9 287,479 - -1.4 287,501 + -2.1 287,502 - -1.1 287,502 - +0.5 287,502 - -0.5 287,512 + -0.6 287,512 + -1.3 287,513 - +0.1 287,513 - +0.4 287,545 + +0.3 287,546 - +0.6 287,559 - HGI48_RS01285 0.13 +1.1 287,574 + HGI48_RS01285 0.17 -1.9 287,574 + HGI48_RS01285 0.17 -1.5 287,574 + HGI48_RS01285 0.17 -1.2 287,575 - HGI48_RS01285 0.17 -0.4 287,575 - HGI48_RS01285 0.17 +0.4 287,575 - HGI48_RS01285 0.17 -0.5 287,583 - HGI48_RS01285 0.20 +0.4 287,623 + HGI48_RS01285 0.31 +0.4 287,623 + HGI48_RS01285 0.31 +2.2 287,625 + HGI48_RS01285 0.32 +0.9 287,625 + HGI48_RS01285 0.32 -0.1 287,626 - +2.3 287,626 - HGI48_RS01285 0.32 +0.5 287,666 + HGI48_RS01285 0.44 +0.7 287,667 - HGI48_RS01285 0.44 -0.5 287,676 + HGI48_RS01285 0.47 +0.1 287,676 + HGI48_RS01285 0.47 +0.8 287,676 + HGI48_RS01285 0.47 +0.2 287,677 - HGI48_RS01285 0.47 -0.3 287,677 - HGI48_RS01285 0.47 -1.9 287,682 - HGI48_RS01285 0.49 -0.2 287,691 + HGI48_RS01285 0.51 +1.5 287,691 + HGI48_RS01285 0.51 -2.1 287,691 + HGI48_RS01285 0.51 -0.8 287,691 + HGI48_RS01285 0.51 -2.3 287,691 + HGI48_RS01285 0.51 -1.1 287,691 + HGI48_RS01285 0.51 -0.4 287,691 + HGI48_RS01285 0.51 -1.3 287,691 + HGI48_RS01285 0.51 -0.6 287,691 + HGI48_RS01285 0.51 -0.2 287,692 - HGI48_RS01285 0.51 +0.6 287,692 - HGI48_RS01285 0.51 +0.8 287,692 - HGI48_RS01285 0.51 -1.2 287,692 - HGI48_RS01285 0.51 +0.0 287,692 - +4.3 287,692 - HGI48_RS01285 0.51 +1.3 287,692 - HGI48_RS01285 0.51 -0.3 287,692 - HGI48_RS01285 0.51 -0.3 287,692 - HGI48_RS01285 0.51 +0.1 287,692 - HGI48_RS01285 0.51 -0.2 287,693 + HGI48_RS01285 0.52 +0.0 287,693 + HGI48_RS01285 0.52 +0.4 287,693 + HGI48_RS01285 0.52 +0.7 287,693 + HGI48_RS01285 0.52 +1.8 287,693 + HGI48_RS01285 0.52 -0.5 287,693 + HGI48_RS01285 0.52 -2.6 287,693 + HGI48_RS01285 0.52 -2.1 287,693 + HGI48_RS01285 0.52 +0.2 287,693 + HGI48_RS01285 0.52 -1.5 287,693 + HGI48_RS01285 0.52 -2.0 287,693 + HGI48_RS01285 0.52 -0.3 287,693 + HGI48_RS01285 0.52 +0.3 287,693 + HGI48_RS01285 0.52 +0.9 287,693 + -0.3 287,693 + HGI48_RS01285 0.52 +0.1 287,693 + HGI48_RS01285 0.52 +0.7 287,693 + HGI48_RS01285 0.52 +0.7 287,693 + HGI48_RS01285 0.52 -1.9 287,693 + HGI48_RS01285 0.52 +1.0 287,694 - HGI48_RS01285 0.52 -0.7 287,694 - HGI48_RS01285 0.52 +0.4 287,694 - HGI48_RS01285 0.52 -1.3 287,694 - HGI48_RS01285 0.52 -0.4 287,694 - HGI48_RS01285 0.52 +0.3 287,694 - HGI48_RS01285 0.52 +1.4 287,694 - HGI48_RS01285 0.52 -0.0 287,694 - HGI48_RS01285 0.52 -0.9 287,694 - HGI48_RS01285 0.52 +0.4 287,694 - HGI48_RS01285 0.52 +1.3 287,694 - HGI48_RS01285 0.52 -0.9 287,695 + +1.3 287,695 + +0.1 287,695 + HGI48_RS01285 0.52 -0.1 287,695 + HGI48_RS01285 0.52 -0.0 287,695 + HGI48_RS01285 0.52 -0.5 287,696 - HGI48_RS01285 0.53 -1.6 287,696 - HGI48_RS01285 0.53 +0.3 287,696 - HGI48_RS01285 0.53 -0.7 287,696 - HGI48_RS01285 0.53 -1.2 287,699 - HGI48_RS01285 0.54 -0.5 287,699 - HGI48_RS01285 0.54 +0.1 287,744 + HGI48_RS01285 0.67 -1.1 287,750 + HGI48_RS01285 0.68 -3.4 287,750 + HGI48_RS01285 0.68 +1.5 287,751 - HGI48_RS01285 0.69 -0.7 287,751 - +1.1 287,790 + HGI48_RS01285 0.80 -1.6 287,790 + HGI48_RS01285 0.80 +0.3 287,790 + HGI48_RS01285 0.80 -0.4 287,795 - HGI48_RS01285 0.82 +1.7 287,815 + HGI48_RS01285 0.87 +1.5 287,861 + +0.6 287,861 + -0.9 287,862 - -0.3 287,868 + +2.3 287,869 - -0.2 287,877 + +1.4 287,877 + +1.0 287,877 + -1.8 287,878 - -0.0 287,891 - +0.4 287,896 - +0.7 287,917 - +0.2 287,920 + -0.6 287,922 + -0.7 287,923 - +0.7 287,963 + -1.7 287,963 + -3.0 287,963 + +0.7 287,963 + +0.7 287,963 + +0.5 287,963 + +0.2 287,964 - -1.3 287,964 - -0.3 287,964 - +0.2 287,968 + +0.7 287,968 + +0.7 287,969 - -0.5 287,973 + -3.0 287,973 + -0.1 287,973 + -2.3 287,973 + +1.5 287,973 + +0.5 287,974 - -0.1 287,974 - -0.8 287,974 - +0.7 287,974 - -0.3 287,974 - -0.9 287,974 - -1.6 287,974 - -0.2 287,974 - +0.7 287,974 - -0.7 288,103 - +0.1 288,143 + HGI48_RS01290 0.31 +0.3 288,143 + HGI48_RS01290 0.31 -1.0 288,175 + HGI48_RS01290 0.41 -0.7 288,175 + HGI48_RS01290 0.41 -1.8 288,301 + HGI48_RS01290 0.84 -0.3 288,320 - -1.9 288,320 - +0.9 288,320 - -0.9 288,348 + +1.0 288,391 + +2.0 288,429 + -0.8 288,498 - HGI48_RS01295 0.13 -1.9 288,529 + HGI48_RS01295 0.16 +0.5 288,530 - HGI48_RS01295 0.16 -1.3 288,550 - HGI48_RS01295 0.18 +0.7 288,552 - HGI48_RS01295 0.19 -1.9 288,552 - HGI48_RS01295 0.19 -0.9 288,552 - HGI48_RS01295 0.19 -2.7 288,620 - HGI48_RS01295 0.26 -1.9 288,620 - HGI48_RS01295 0.26 -1.6 288,670 - HGI48_RS01295 0.31 +1.3 288,670 - HGI48_RS01295 0.31 +0.8 288,694 + HGI48_RS01295 0.33 -1.9 288,729 - HGI48_RS01295 0.37 +0.0 288,770 + HGI48_RS01295 0.41 +0.1 288,770 + HGI48_RS01295 0.41 -1.3 288,771 - HGI48_RS01295 0.41 -0.3 288,771 - HGI48_RS01295 0.41 -1.7 288,790 + HGI48_RS01295 0.43 +0.7 288,790 + HGI48_RS01295 0.43 -0.0 288,791 - HGI48_RS01295 0.43 +0.5 288,852 - HGI48_RS01295 0.50 +0.4 288,891 - HGI48_RS01295 0.54 -0.9 288,891 - HGI48_RS01295 0.54 +1.6 288,891 - HGI48_RS01295 0.54 -2.1 288,891 - HGI48_RS01295 0.54 -1.2 288,891 - HGI48_RS01295 0.54 -1.4 288,892 - HGI48_RS01295 0.54 +1.2 288,943 - HGI48_RS01295 0.59 +0.3 289,162 - HGI48_RS01295 0.82 +1.0 289,162 - HGI48_RS01295 0.82 -1.3 289,162 - HGI48_RS01295 0.82 -0.2 289,162 - HGI48_RS01295 0.82 +0.3 289,162 - HGI48_RS01295 0.82 +1.3 289,162 - HGI48_RS01295 0.82 -2.3 289,162 - HGI48_RS01295 0.82 +0.4 289,162 - HGI48_RS01295 0.82 +0.4 289,162 - HGI48_RS01295 0.82 -0.2 289,162 - HGI48_RS01295 0.82 -0.4
Or see this region's nucleotide sequence