Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS00875 and HGI48_RS00880 are separated by 24 nucleotides HGI48_RS00880 and HGI48_RS00885 are separated by 117 nucleotides HGI48_RS00885 and HGI48_RS00890 are separated by 188 nucleotides
HGI48_RS00875: HGI48_RS00875 - N-acetyl-gamma-glutamyl-phosphate reductase, at 200,938 to 201,942
_RS00875
HGI48_RS00880: HGI48_RS00880 - acetylglutamate kinase, at 201,967 to 202,740
_RS00880
HGI48_RS00885: HGI48_RS00885 - argininosuccinate lyase, at 202,858 to 204,231
_RS00885
HGI48_RS00890: HGI48_RS00890 - DNA recombination protein RmuC, at 204,420 to 205,952
_RS00890
Position (kb) 202
203
204
205 Strain fitness (log2 ratio) -2
-1
0
1
2 at 201.859 kb on - strand at 201.859 kb on - strand at 201.859 kb on - strand at 201.935 kb on + strand at 201.935 kb on + strand at 201.935 kb on + strand at 201.936 kb on - strand at 201.981 kb on + strand at 201.981 kb on + strand at 201.981 kb on + strand at 201.982 kb on - strand at 201.990 kb on - strand at 201.998 kb on + strand at 202.051 kb on + strand, within HGI48_RS00880 at 202.052 kb on - strand, within HGI48_RS00880 at 202.413 kb on + strand, within HGI48_RS00880 at 202.413 kb on + strand, within HGI48_RS00880 at 202.590 kb on + strand, within HGI48_RS00880 at 202.590 kb on + strand, within HGI48_RS00880 at 202.590 kb on + strand, within HGI48_RS00880 at 202.590 kb on + strand, within HGI48_RS00880 at 202.590 kb on + strand, within HGI48_RS00880 at 202.591 kb on - strand, within HGI48_RS00880 at 202.591 kb on - strand, within HGI48_RS00880 at 202.591 kb on - strand, within HGI48_RS00880 at 202.853 kb on + strand at 202.853 kb on + strand at 202.853 kb on + strand at 202.853 kb on + strand at 202.853 kb on + strand at 202.853 kb on + strand at 202.853 kb on + strand at 202.854 kb on - strand at 202.854 kb on - strand at 202.854 kb on - strand at 202.854 kb on - strand at 202.857 kb on + strand at 202.857 kb on + strand at 202.857 kb on + strand at 202.858 kb on - strand at 202.858 kb on - strand at 202.905 kb on + strand at 203.003 kb on + strand, within HGI48_RS00885 at 203.003 kb on + strand, within HGI48_RS00885 at 203.004 kb on - strand, within HGI48_RS00885 at 203.004 kb on - strand, within HGI48_RS00885 at 203.004 kb on - strand, within HGI48_RS00885 at 203.004 kb on - strand, within HGI48_RS00885 at 203.044 kb on - strand, within HGI48_RS00885 at 203.044 kb on - strand, within HGI48_RS00885 at 203.317 kb on + strand, within HGI48_RS00885 at 203.319 kb on + strand, within HGI48_RS00885 at 203.320 kb on - strand, within HGI48_RS00885 at 203.320 kb on - strand, within HGI48_RS00885 at 203.413 kb on - strand, within HGI48_RS00885 at 203.413 kb on - strand, within HGI48_RS00885 at 203.475 kb on + strand, within HGI48_RS00885 at 203.676 kb on + strand, within HGI48_RS00885 at 203.677 kb on - strand, within HGI48_RS00885 at 203.806 kb on + strand, within HGI48_RS00885 at 203.806 kb on + strand, within HGI48_RS00885 at 203.806 kb on + strand, within HGI48_RS00885 at 203.817 kb on + strand, within HGI48_RS00885 at 203.817 kb on + strand, within HGI48_RS00885 at 203.817 kb on + strand, within HGI48_RS00885 at 203.817 kb on + strand, within HGI48_RS00885 at 203.818 kb on - strand, within HGI48_RS00885 at 203.818 kb on - strand, within HGI48_RS00885 at 203.818 kb on - strand, within HGI48_RS00885 at 203.818 kb on - strand, within HGI48_RS00885 at 203.818 kb on - strand, within HGI48_RS00885 at 203.974 kb on + strand, within HGI48_RS00885 at 203.974 kb on + strand at 204.054 kb on + strand, within HGI48_RS00885 at 204.104 kb on + strand at 204.105 kb on - strand at 204.229 kb on + strand at 204.230 kb on - strand at 204.242 kb on - strand at 204.366 kb on + strand at 204.366 kb on + strand at 204.366 kb on + strand at 204.366 kb on + strand at 204.366 kb on + strand at 204.366 kb on + strand at 204.366 kb on + strand at 204.367 kb on - strand at 204.367 kb on - strand at 204.368 kb on + strand at 204.368 kb on + strand at 204.368 kb on + strand at 204.368 kb on + strand at 204.368 kb on + strand at 204.368 kb on + strand at 204.369 kb on - strand at 204.369 kb on - strand at 204.369 kb on - strand at 204.369 kb on - strand at 204.382 kb on - strand at 204.396 kb on + strand at 204.396 kb on + strand at 204.399 kb on + strand at 204.399 kb on + strand at 204.399 kb on + strand at 204.400 kb on - strand at 204.400 kb on - strand at 204.426 kb on - strand at 204.439 kb on - strand at 204.532 kb on + strand at 204.533 kb on - strand at 204.533 kb on - strand at 204.533 kb on - strand at 204.697 kb on + strand, within HGI48_RS00890 at 204.719 kb on + strand, within HGI48_RS00890 at 204.720 kb on - strand, within HGI48_RS00890 at 204.935 kb on + strand, within HGI48_RS00890 at 204.935 kb on + strand, within HGI48_RS00890 at 204.935 kb on + strand, within HGI48_RS00890 at 204.936 kb on - strand, within HGI48_RS00890 at 205.153 kb on + strand, within HGI48_RS00890 at 205.154 kb on - strand, within HGI48_RS00890 at 205.197 kb on + strand, within HGI48_RS00890 at 205.197 kb on + strand, within HGI48_RS00890 at 205.197 kb on + strand, within HGI48_RS00890 at 205.198 kb on - strand, within HGI48_RS00890 at 205.198 kb on - strand, within HGI48_RS00890 at 205.198 kb on - strand, within HGI48_RS00890 at 205.198 kb on - strand, within HGI48_RS00890 at 205.198 kb on - strand, within HGI48_RS00890
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 201,859 - -0.6 201,859 - -0.9 201,859 - -1.6 201,935 + -1.6 201,935 + -0.5 201,935 + -1.3 201,936 - -1.3 201,981 + +0.3 201,981 + +0.3 201,981 + -1.7 201,982 - +0.1 201,990 - -0.6 201,998 + -0.4 202,051 + HGI48_RS00880 0.11 -0.7 202,052 - HGI48_RS00880 0.11 -0.3 202,413 + HGI48_RS00880 0.58 -0.6 202,413 + HGI48_RS00880 0.58 -2.5 202,590 + HGI48_RS00880 0.80 -0.5 202,590 + HGI48_RS00880 0.80 -1.1 202,590 + HGI48_RS00880 0.80 -0.3 202,590 + HGI48_RS00880 0.80 +0.9 202,590 + HGI48_RS00880 0.80 -1.3 202,591 - HGI48_RS00880 0.81 -0.0 202,591 - HGI48_RS00880 0.81 -0.6 202,591 - HGI48_RS00880 0.81 +0.1 202,853 + +0.4 202,853 + -2.1 202,853 + -0.5 202,853 + -1.9 202,853 + -0.1 202,853 + +0.7 202,853 + +0.2 202,854 - +1.2 202,854 - +0.7 202,854 - +0.4 202,854 - -0.5 202,857 + +0.4 202,857 + -0.3 202,857 + -0.4 202,858 - +0.7 202,858 - +1.1 202,905 + +0.6 203,003 + HGI48_RS00885 0.11 -0.3 203,003 + HGI48_RS00885 0.11 +0.6 203,004 - HGI48_RS00885 0.11 +0.2 203,004 - HGI48_RS00885 0.11 +0.3 203,004 - HGI48_RS00885 0.11 -2.1 203,004 - HGI48_RS00885 0.11 -0.6 203,044 - HGI48_RS00885 0.14 +0.3 203,044 - HGI48_RS00885 0.14 +0.4 203,317 + HGI48_RS00885 0.33 +0.2 203,319 + HGI48_RS00885 0.34 -0.0 203,320 - HGI48_RS00885 0.34 +0.7 203,320 - HGI48_RS00885 0.34 +0.3 203,413 - HGI48_RS00885 0.40 -1.1 203,413 - HGI48_RS00885 0.40 -0.5 203,475 + HGI48_RS00885 0.45 +0.0 203,676 + HGI48_RS00885 0.60 +1.2 203,677 - HGI48_RS00885 0.60 +0.4 203,806 + HGI48_RS00885 0.69 -0.6 203,806 + HGI48_RS00885 0.69 -2.7 203,806 + HGI48_RS00885 0.69 -0.9 203,817 + HGI48_RS00885 0.70 -0.6 203,817 + HGI48_RS00885 0.70 +1.1 203,817 + HGI48_RS00885 0.70 -2.3 203,817 + HGI48_RS00885 0.70 +0.3 203,818 - HGI48_RS00885 0.70 -0.6 203,818 - HGI48_RS00885 0.70 +0.7 203,818 - HGI48_RS00885 0.70 -1.3 203,818 - HGI48_RS00885 0.70 -0.0 203,818 - HGI48_RS00885 0.70 -0.3 203,974 + HGI48_RS00885 0.81 +0.1 203,974 + +1.7 204,054 + HGI48_RS00885 0.87 +1.9 204,104 + +1.2 204,105 - -0.9 204,229 + -1.9 204,230 - +0.5 204,242 - -0.2 204,366 + +0.2 204,366 + -0.0 204,366 + -0.2 204,366 + +0.0 204,366 + +1.0 204,366 + -0.9 204,366 + +0.7 204,367 - -1.1 204,367 - -0.3 204,368 + -0.0 204,368 + +0.1 204,368 + -0.6 204,368 + +0.1 204,368 + +0.2 204,368 + -0.9 204,369 - -0.0 204,369 - -0.9 204,369 - -1.2 204,369 - +0.4 204,382 - +0.5 204,396 + -0.7 204,396 + +0.5 204,399 + +0.4 204,399 + -0.1 204,399 + -1.3 204,400 - -0.5 204,400 - -0.2 204,426 - -0.1 204,439 - +0.3 204,532 + +0.1 204,533 - +0.7 204,533 - -0.7 204,533 - +0.5 204,697 + HGI48_RS00890 0.18 +0.2 204,719 + HGI48_RS00890 0.20 -1.3 204,720 - HGI48_RS00890 0.20 -1.6 204,935 + HGI48_RS00890 0.34 -0.3 204,935 + HGI48_RS00890 0.34 -1.3 204,935 + HGI48_RS00890 0.34 -0.1 204,936 - HGI48_RS00890 0.34 +1.4 205,153 + HGI48_RS00890 0.48 -0.5 205,154 - HGI48_RS00890 0.48 -1.9 205,197 + HGI48_RS00890 0.51 +0.0 205,197 + HGI48_RS00890 0.51 -0.9 205,197 + HGI48_RS00890 0.51 -1.0 205,198 - HGI48_RS00890 0.51 +1.0 205,198 - HGI48_RS00890 0.51 +0.0 205,198 - HGI48_RS00890 0.51 -0.0 205,198 - HGI48_RS00890 0.51 -0.2 205,198 - HGI48_RS00890 0.51 +0.6
Or see this region's nucleotide sequence